Hanchuan Peng Allen Institute for Brain Science Biography Publications Institution JoVE Articles Hanchuan Peng has not added a biography. If you are Hanchuan Peng and would like to personalize this page please email our Author Liaison for assistance. Publications Automated Image Computing Reshapes Computational Neuroscience BMC Bioinformatics. Oct, 2013 | Pubmed ID: 24090217 BIOCAT: a Pattern Recognition Platform for Customizable Biological Image Classification and Annotation BMC Bioinformatics. Oct, 2013 | Pubmed ID: 24090164 Automated Cellular Annotation for High-resolution Images of Adult Caenorhabditis Elegans Bioinformatics (Oxford, England). Jul, 2013 | Pubmed ID: 23812982 APP2: Automatic Tracing of 3D Neuron Morphology Based on Hierarchical Pruning of a Gray-weighted Image Distance-tree Bioinformatics (Oxford, England). Jun, 2013 | Pubmed ID: 23603332 Clonal Development and Organization of the Adult Drosophila Central Brain Current Biology : CB. Apr, 2013 | Pubmed ID: 23541733 A Distance-field Based Automatic Neuron Tracing Method BMC Bioinformatics. 2013 | Pubmed ID: 23497429 Eight Pairs of Descending Visual Neurons in the Dragonfly Give Wing Motor Centers Accurate Population Vector of Prey Direction Proceedings of the National Academy of Sciences of the United States of America. Jan, 2013 | Pubmed ID: 23213224 A GAL4-driver Line Resource for Drosophila Neurobiology Cell Reports. Oct, 2012 | Pubmed ID: 23063364 Biological Imaging Software Tools Nature Methods. Jul, 2012 | Pubmed ID: 22743775 Visualization and Analysis of 3D Microscopic Images PLoS Computational Biology. 2012 | Pubmed ID: 22719236 Bioimage Informatics: a New Category in Bioinformatics Bioinformatics (Oxford, England). Apr, 2012 | Pubmed ID: 22399678 MGRASP Enables Mapping Mammalian Synaptic Connectivity with Light Microscopy Nature Methods. Jan, 2012 | Pubmed ID: 22138823 Simultaneous Recognition and Segmentation of Cells: Application in C.elegans Bioinformatics (Oxford, England). Oct, 2011 | Pubmed ID: 21849395 Automatic 3D Neuron Tracing Using All-path Pruning Bioinformatics (Oxford, England). Jul, 2011 | Pubmed ID: 21685076 Anisotropic Path Searching for Automatic Neuron Reconstruction Medical Image Analysis. Oct, 2011 | Pubmed ID: 21669547 Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models Neuroinformatics. Sep, 2011 | Pubmed ID: 21547564 BrainAligner: 3D Registration Atlases of Drosophila Brains Nature Methods. Jun, 2011 | Pubmed ID: 21532582 Proof-editing is the Bottleneck of 3D Neuron Reconstruction: the Problem and Solutions Neuroinformatics. Sep, 2011 | Pubmed ID: 21170608 Automatic Neuron Tracing in Volumetric Microscopy Images with Anisotropic Path Searching Medical Image Computing and Computer-assisted Intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2010 | Pubmed ID: 20879349 Automatic Reconstruction of 3D Neuron Structures Using a Graph-augmented Deformable Model Bioinformatics (Oxford, England). Jun, 2010 | Pubmed ID: 20529931 V3D Enables Real-time 3D Visualization and Quantitative Analysis of Large-scale Biological Image Data Sets Nature Biotechnology. Apr, 2010 | Pubmed ID: 20231818 A Principal Skeleton Algorithm for Standardizing Confocal Images of Fruit Fly Nervous Systems Bioinformatics (Oxford, England). Apr, 2010 | Pubmed ID: 20172944 Segmentation of Center Brains and Optic Lobes in 3D Confocal Images of Adult Fruit Fly Brains Methods (San Diego, Calif.). Feb, 2010 | Pubmed ID: 19698789 Analysis of Cell Fate from Single-cell Gene Expression Profiles in C. Elegans Cell. Oct, 2009 | Pubmed ID: 19879847 Imaging Informatics for Personalised Medicine: Applications and Challenges International Journal of Functional Informatics and Personalised Medicine. 2009 | Pubmed ID: 19862353 A 3D Digital Atlas of C. Elegans and Its Application to Single-cell Analyses Nature Methods. Sep, 2009 | Pubmed ID: 19684595 VANO: a Volume-object Image Annotation System Bioinformatics (Oxford, England). Mar, 2009 | Pubmed ID: 19189978 Bioimage Informatics: a New Area of Engineering Biology Bioinformatics (Oxford, England). Sep, 2008 | Pubmed ID: 18603566 Straightening Caenorhabditis Elegans Images Bioinformatics (Oxford, England). Jan, 2008 | Pubmed ID: 18025002 Automatic Image Analysis for Gene Expression Patterns of Fly Embryos BMC Cell Biology. 2007 | Pubmed ID: 17634097 Phenotype Clustering of Breast Epithelial Cells in Confocal Images Based on Nuclear Protein Distribution Analysis BMC Cell Biology. 2007 | Pubmed ID: 17634093 Automatic Recognition and Annotation of Gene Expression Patterns of Fly Embryos Bioinformatics (Oxford, England). Mar, 2007 | Pubmed ID: 17237064 Transitive Closure and Metric Inequality of Weighted Graphs: Detecting Protein Interaction Modules Using Cliques International Journal of Data Mining and Bioinformatics. 2006 | Pubmed ID: 18399069 Feature Selection Based on Mutual Information: Criteria of Max-dependency, Max-relevance, and Min-redundancy IEEE Transactions on Pattern Analysis and Machine Intelligence. Aug, 2005 | Pubmed ID: 16119262 Minimum Redundancy Feature Selection from Microarray Gene Expression Data Journal of Bioinformatics and Computational Biology. Apr, 2005 | Pubmed ID: 15852500 Mapping of Microbial Pathways Through Constrained Mapping of Orthologous Genes Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference. 2004 | Pubmed ID: 16448029 A Bayesian Morphometry Algorithm IEEE Transactions on Medical Imaging. Jun, 2004 | Pubmed ID: 15191147 Micron-scale Resolution Optical Tomography of Entire Mouse Brains with Confocal Light Sheet Microscopy Ludovico Silvestri1, Alessandro Bria2,3, Irene Costantini1, Leonardo Sacconi1,4, Hanchuan Peng5, Giulio Iannello2, Francesco Saverio Pavone1,4,6,7 1European Laboratory for Non-linear Spectroscopy (LENS), 2Integrated Research Centre, University Campus Bio-medico of Rome, 3DAEMI, University of Cassino, 4National Institute of Optics (CNR-INO), 5Allen Institute for Brain Science, 6Department of Physics, University of Florence, 7ICON Foundation, Sesto Fiorentino, Italy JoVE 50696 Neuroscience
Micron-scale Resolution Optical Tomography of Entire Mouse Brains with Confocal Light Sheet Microscopy Ludovico Silvestri1, Alessandro Bria2,3, Irene Costantini1, Leonardo Sacconi1,4, Hanchuan Peng5, Giulio Iannello2, Francesco Saverio Pavone1,4,6,7 1European Laboratory for Non-linear Spectroscopy (LENS), 2Integrated Research Centre, University Campus Bio-medico of Rome, 3DAEMI, University of Cassino, 4National Institute of Optics (CNR-INO), 5Allen Institute for Brain Science, 6Department of Physics, University of Florence, 7ICON Foundation, Sesto Fiorentino, Italy JoVE 50696 Neuroscience
