Himadri B. Pakrasi Department of Energy, Environmental and Chemical Engineering and Department of Biology Washington University Biography Publications Institution JoVE Articles Himadri B. Pakrasi has not added a biography. If you are Himadri B. Pakrasi and would like to personalize this page please email our Author Liaison for assistance. Publications Photosynthetic Pigment Localization and Thylakoid Membrane Morphology Are Altered in Synechocystis 6803 Phycobilisome Mutants Plant Physiology. Feb, 2012 | Pubmed ID: 22331410 Dynamic Proteome Analysis of Cyanothece Sp. ATCC 51142 Under Constant Light Journal of Proteome Research. Feb, 2012 | Pubmed ID: 22060561 Dynamic Proteomic Profiling of a Unicellular Cyanobacterium Cyanothece ATCC51142 Across Light-dark Diurnal Cycles BMC Systems Biology. 2011 | Pubmed ID: 22133144 Psb27, a Transiently Associated Protein, Binds to the Chlorophyll Binding Protein CP43 in Photosystem II Assembly Intermediates Proceedings of the National Academy of Sciences of the United States of America. Nov, 2011 | Pubmed ID: 22031695 Novel Metabolic Attributes of the Genus Cyanothece, Comprising a Group of Unicellular Nitrogen-fixing Cyanothece MBio. 2011 | Pubmed ID: 21972240 A Model of Cyclic Transcriptomic Behavior in the Cyanobacterium Cyanothece Sp. ATCC 51142 Molecular BioSystems. Aug, 2011 | Pubmed ID: 21698331 The Psb32 Protein Aids in Repairing Photodamaged Photosystem II in the Cyanobacterium Synechocystis 6803 Molecular Plant. Nov, 2011 | Pubmed ID: 21653280 A Genetically Tagged Psb27 Protein Allows Purification of Two Consecutive Photosystem II (PSII) Assembly Intermediates in Synechocystis 6803, a Cyanobacterium The Journal of Biological Chemistry. Jul, 2011 | Pubmed ID: 21592967 Glutathione Facilitates Antibiotic Resistance and Photosystem I Stability During Exposure to Gentamicin in Cyanobacteria Applied and Environmental Microbiology. May, 2011 | Pubmed ID: 21460113 Insights into the Complex 3-D Architecture of Thylakoid Membranes in Unicellular Cyanobacterium Cyanothece Sp. ATCC 51142 Plant Signaling & Behavior. Apr, 2011 | Pubmed ID: 21445014 Diurnal Rhythms Result in Significant Changes in the Cellular Protein Complement in the Cyanobacterium Cyanothece 51142 PloS One. 2011 | Pubmed ID: 21364985 Glutathione in Synechocystis 6803: a Closer Look into the Physiology of a ∆gshB Mutant Plant Signaling & Behavior. Jan, 2011 | Pubmed ID: 21301218 Unique Thylakoid Membrane Architecture of a Unicellular N2-fixing Cyanobacterium Revealed by Electron Tomography Plant Physiology. Apr, 2011 | Pubmed ID: 21173021 Identification and Modeling of Genes with Diurnal Oscillations from Microarray Time Series Data IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM. Jan-Mar, 2011 | Pubmed ID: 21071801 Bridging the Gap Between Fluxomics and Industrial Biotechnology Journal of Biomedicine & Biotechnology. 2010 | Pubmed ID: 21274256 High Rates of Photobiological H2 Production by a Cyanobacterium Under Aerobic Conditions Nature Communications. 2010 | Pubmed ID: 21266989 S4 Protein Sll1252 Is Necessary for Energy Balancing in Photosynthetic Electron Transport in Synechocystis Sp. PCC 6803 Biochemistry. Dec, 2010 | Pubmed ID: 21141807 Essential Role of Glutathione in Acclimation to Environmental and Redox Perturbations in the Cyanobacterium Synechocystis Sp. PCC 6803 Plant Physiology. Dec, 2010 | Pubmed ID: 20935175 Global Proteomics Reveal an Atypical Strategy for Carbon/nitrogen Assimilation by a Cyanobacterium Under Diverse Environmental Perturbations Molecular & Cellular Proteomics : MCP. Dec, 2010 | Pubmed ID: 20858728 Integrative Analysis of Large Scale Expression Profiles Reveals Core Transcriptional Response and Coordination Between Multiple Cellular Processes in a Cyanobacterium BMC Systems Biology. 2010 | Pubmed ID: 20678200 Better Living Through Cyanothece - Unicellular Diazotrophic Cyanobacteria with Highly Versatile Metabolic Systems Advances in Experimental Medicine and Biology. 2010 | Pubmed ID: 20532747 Mixotrophic and Photoheterotrophic Metabolism in Cyanothece Sp. ATCC 51142 Under Continuous Light Microbiology (Reading, England). Aug, 2010 | Pubmed ID: 20430816 Alternative Isoleucine Synthesis Pathway in Cyanobacterial Species Microbiology (Reading, England). Feb, 2010 | Pubmed ID: 19875435 A Systems-level Analysis of the Effects of Light Quality on the Metabolism of a Cyanobacterium Plant Physiology. Nov, 2009 | Pubmed ID: 19759342 Effect of Continuous Light on Diurnal Rhythms in Cyanothece Sp. ATCC 51142 BMC Genomics. 2009 | Pubmed ID: 19445672 The Genome of Cyanothece 51142, a Unicellular Diazotrophic Cyanobacterium Important in the Marine Nitrogen Cycle Proceedings of the National Academy of Sciences of the United States of America. Sep, 2008 | Pubmed ID: 18812508 Properties of Mutants of Synechocystis Sp. Strain PCC 6803 Lacking Inorganic Carbon Sequestration Systems Plant & Cell Physiology. Nov, 2008 | Pubmed ID: 18784196 High Sensitivity Proteomics Assisted Discovery of a Novel Operon Involved in the Assembly of Photosystem II, a Membrane Protein Complex The Journal of Biological Chemistry. Oct, 2008 | Pubmed ID: 18693241 Integration of Carbon and Nitrogen Metabolism with Energy Production is Crucial to Light Acclimation in the Cyanobacterium Synechocystis Plant Physiology. Sep, 2008 | Pubmed ID: 18599646 Identification and Localization of the CupB Protein Involved in Constitutive CO2 Uptake in the Cyanobacterium, Synechocystis Sp. Strain PCC 6803 Plant & Cell Physiology. Jun, 2008 | Pubmed ID: 18467341 Global Transcriptomic Analysis of Cyanothece 51142 Reveals Robust Diurnal Oscillation of Central Metabolic Processes Proceedings of the National Academy of Sciences of the United States of America. Apr, 2008 | Pubmed ID: 18427117 Identification of an Atypical Membrane Protein Involved in the Formation of Protein Disulfide Bonds in Oxygenic Photosynthetic Organisms The Journal of Biological Chemistry. Jun, 2008 | Pubmed ID: 18413314 Differential Transcriptional Analysis of the Cyanobacterium Cyanothece Sp. Strain ATCC 51142 During Light-dark and Continuous-light Growth Journal of Bacteriology. Jun, 2008 | Pubmed ID: 18390663 A Photobioreactor System for Precision Cultivation of Photoautotrophic Microorganisms and for High-content Analysis of Suspension Dynamics Biotechnology and Bioengineering. Aug, 2008 | Pubmed ID: 18383143 Insights into the Structural Variation Between Pentapeptide Repeat Proteins--crystal Structure of Rfr23 from Cyanothece 51142 Journal of Structural Biology. Apr, 2008 | Pubmed ID: 18158251 The Psb27 Protein Facilitates Manganese Cluster Assembly in Photosystem II The Journal of Biological Chemistry. Feb, 2008 | Pubmed ID: 18089572 The Structure of the Iron-binding Protein, FutA1, from Synechocystis 6803 The Journal of Biological Chemistry. Sep, 2007 | Pubmed ID: 17626019 Possible Regulatory Role for the Histidine-rich Loop in the Zinc Transport Protein, ZnuA Biochemistry. Jul, 2007 | Pubmed ID: 17616151 A Network of Genes Regulated by Light in Cyanobacteria Omics : a Journal of Integrative Biology. 2007 | Pubmed ID: 17594236 The PsbQ Protein Defines Cyanobacterial Photosystem II Complexes with Highest Activity and Stability Proceedings of the National Academy of Sciences of the United States of America. Feb, 2007 | Pubmed ID: 17287351 The Extrinsic Proteins of Photosystem II Photosynthesis Research. Jun, 2007 | Pubmed ID: 17200881 The Structure of a Cyanobacterial Bicarbonate Transport Protein, CmpA The Journal of Biological Chemistry. Jan, 2007 | Pubmed ID: 17121816 Characterization of Two Potentially Universal Turn Motifs That Shape the Repeated Five-residues Fold--crystal Structure of a Lumenal Pentapeptide Repeat Protein from Cyanothece 51142 Protein Science : a Publication of the Protein Society. Nov, 2006 | Pubmed ID: 17075135 Atomic Structure of a Nitrate-binding Protein Crucial for Photosynthetic Productivity Proceedings of the National Academy of Sciences of the United States of America. Jun, 2006 | Pubmed ID: 16777960 Ultrastructure of the Membrane Systems in the Unicellular Cyanobacterium Synechocystis Sp. Strain PCC 6803 Protoplasma. May, 2006 | Pubmed ID: 16736255 Absence of the PsbQ Protein Results in Destabilization of the PsbV Protein and Decreased Oxygen Evolution Activity in Cyanobacterial Photosystem II The Journal of Biological Chemistry. Jul, 2006 | Pubmed ID: 16723351 An Inquiry into Protein Structure and Genetic Disease: Introducing Undergraduates to Bioinformatics in a Large Introductory Course Cell Biology Education. 2005 | Pubmed ID: 16220142 Psb29, a Conserved 22-kD Protein, Functions in the Biogenesis of Photosystem II Complexes in Synechocystis and Arabidopsis The Plant Cell. Oct, 2005 | Pubmed ID: 16155179 Physcomitrella Patens and Ceratodon Purpureus, Mosses As Model Organisms in Photosynthesis Studies Photosynthesis Research. 2005 | Pubmed ID: 16143910 PsbU Provides a Stable Architecture for the Oxygen-evolving System in Cyanobacterial Photosystem II Biochemistry. Sep, 2005 | Pubmed ID: 16142920 Isolation, Subunit Composition and Interaction of the NDH-1 Complexes from Thermosynechococcus Elongatus BP-1 The Biochemical Journal. Sep, 2005 | Pubmed ID: 15910282 Photochemical Competence of Assembled Photosystem II Core Complex in Cyanobacterial Plasma Membrane The Journal of Biological Chemistry. Feb, 2005 | Pubmed ID: 15611096 Evidence That D1 Processing is Required for Manganese Binding and Extrinsic Protein Assembly into Photosystem II The Journal of Biological Chemistry. Oct, 2004 | Pubmed ID: 15308630 Homologs of Plant PsbP and PsbQ Proteins Are Necessary for Regulation of Photosystem Ii Activity in the Cyanobacterium Synechocystis 6803 The Plant Cell. Aug, 2004 | Pubmed ID: 15258264 Critical Roles of Bacterioferritins in Iron Storage and Proliferation of Cyanobacteria Plant Physiology. Jul, 2004 | Pubmed ID: 15247377 Response to Oxidative Stress Involves a Novel Peroxiredoxin Gene in the Unicellular Cyanobacterium Synechocystis Sp. PCC 6803 Plant & Cell Physiology. Mar, 2004 | Pubmed ID: 15047877 Structural Determinants of Metal Specificity in the Zinc Transport Protein ZnuA from Synechocystis 6803 Journal of Molecular Biology. Nov, 2003 | Pubmed ID: 14583199 Regulation of Manganese Uptake in Synechocystis 6803 by RfrA, a Member of a Novel Family of Proteins Containing a Repeated Five-residues Domain Biochemistry. May, 2003 | Pubmed ID: 12731893 Proteomics of Synechocystis Sp. Strain PCC 6803: Identification of Plasma Membrane Proteins Molecular & Cellular Proteomics : MCP. Dec, 2002 | Pubmed ID: 12543932 A Light-dependent Mechanism for Massive Accumulation of Manganese in the Photosynthetic Bacterium Synechocystis Sp. PCC 6803 Biochemistry. Dec, 2002 | Pubmed ID: 12475258 Low-molecular-mass Polypeptide Components of a Photosystem II Preparation from the Thermophilic Cyanobacterium Thermosynechococcus Vulcanus Plant & Cell Physiology. Nov, 2002 | Pubmed ID: 12461137 Proteomic Analysis of a Highly Active Photosystem II Preparation from the Cyanobacterium Synechocystis Sp. PCC 6803 Reveals the Presence of Novel Polypeptides Biochemistry. Jun, 2002 | Pubmed ID: 12069591 A Two-component Signal Transduction Pathway Regulates Manganese Homeostasis in Synechocystis 6803, a Photosynthetic Organism The Journal of Biological Chemistry. Aug, 2002 | Pubmed ID: 12039966 Metabolic Pathway Confirmation and Discovery Through 13C-labeling of Proteinogenic Amino Acids Le You1, Lawrence Page2, Xueyang Feng1, Bert Berla1, Himadri B. Pakrasi3, Yinjie J. Tang1 1Department of Energy, Environmental and Chemical Engineering, Washington University, 2Department of Biology, Washington University, 3Department of Energy, Environmental and Chemical Engineering and Department of Biology, Washington University JoVE 3583 Biology
Metabolic Pathway Confirmation and Discovery Through 13C-labeling of Proteinogenic Amino Acids Le You1, Lawrence Page2, Xueyang Feng1, Bert Berla1, Himadri B. Pakrasi3, Yinjie J. Tang1 1Department of Energy, Environmental and Chemical Engineering, Washington University, 2Department of Biology, Washington University, 3Department of Energy, Environmental and Chemical Engineering and Department of Biology, Washington University JoVE 3583 Biology