Johannes Krause Department of Archaeogenetics Max Planck Institute for the Science of Human History Biography Publications Institution JoVE Articles Johannes Krause has not added a biography. If you are Johannes Krause and would like to personalize this page please email our Author Liaison for assistance. Publications Genomic Transformation and Social Organization During the Copper Age-Bronze Age Transition in Southern Iberia Science Advances. Nov, 2021 | Pubmed ID: 34788096 The Genomic Origins of the Bronze Age Tarim Basin Mummies Nature. 11, 2021 | Pubmed ID: 34707286 The Origins and Spread of Domestic Horses from the Western Eurasian Steppes Nature. Oct, 2021 | Pubmed ID: 34671162 Ethics of DNA Research on Human Remains: Five Globally Applicable Guidelines Nature. Nov, 2021 | Pubmed ID: 34671160 Ten Millennia of Hepatitis B Virus Evolution Science (New York, N.Y.). 10, 2021 | Pubmed ID: 34618559 Mycobacterium Leprae Diversity and Population Dynamics in Medieval Europe from Novel Ancient Genomes BMC Biology. 10, 2021 | Pubmed ID: 34610848 Genome-wide Autosomal, MtDNA, and Y Chromosome Analysis of King Bela III of the Hungarian Arpad Dynasty Scientific Reports. Sep, 2021 | Pubmed ID: 34584164 Performance and Automation of Ancient DNA Capture with RNA HyRAD Probes Molecular Ecology Resources. Sep, 2021 | Pubmed ID: 34582623 The Origin and Legacy of the Etruscans Through a 2000-year Archeogenomic Time Transect Science Advances. Sep, 2021 | Pubmed ID: 34559560 A 3,000-year-old, Basal S. Enterica Lineage from Bronze Age Xinjiang Suggests Spread Along the Proto-Silk Road PLoS Pathogens. 09, 2021 | Pubmed ID: 34547027 Genome of a Middle Holocene Hunter-gatherer from Wallacea Nature. Aug, 2021 | Pubmed ID: 34433944 Dynamic Changes in Genomic and Social Structures in Third Millennium BCE Central Europe Science Advances. Aug, 2021 | Pubmed ID: 34433570 Using Y-chromosome Capture Enrichment to Resolve Haplogroup H2 Shows New Evidence for a Two-path Neolithic Expansion to Western Europe Scientific Reports. 07, 2021 | Pubmed ID: 34294811 Human Mobility at Tell Atchana (Alalakh), Hatay, Turkey During the 2nd Millennium BC: Integration of Isotopic and Genomic Evidence PloS One. 2021 | Pubmed ID: 34191795 Analysis of Genomic DNA from Medieval Plague Victims Suggests Long-Term Effect of Yersinia Pestis on Human Immunity Genes Molecular Biology and Evolution. Sep, 2021 | Pubmed ID: 34002224 Mass Burial Genomics Reveals Outbreak of Enteric Paratyphoid Fever in the Late Medieval Trade City Lübeck IScience. May, 2021 | Pubmed ID: 33997698 The Evolution and Changing Ecology of the African Hominid Oral Microbiome Proceedings of the National Academy of Sciences of the United States of America. 05, 2021 | Pubmed ID: 33972424 A Genome Sequence from a Modern Human Skull over 45,000 Years Old from Zlatý Kůň in Czechia Nature Ecology & Evolution. 06, 2021 | Pubmed ID: 33828249 Ancient Genomic Time Transect from the Central Asian Steppe Unravels the History of the Scythians Science Advances. Mar, 2021 | Pubmed ID: 33771866 Genomic Insights into the Formation of Human Populations in East Asia Nature. 03, 2021 | Pubmed ID: 33618348 Genome-wide Study of a Neolithic Wartberg Grave Community Reveals Distinct HLA Variation and Hunter-gatherer Ancestry Communications Biology. 01, 2021 | Pubmed ID: 33495542 A Dynamic 6,000-Year Genetic History of Eurasia's Eastern Steppe Cell. 11, 2020 | Pubmed ID: 33157037 Comparison of Target Enrichment Strategies for Ancient Pathogen DNA BioTechniques. 12, 2020 | Pubmed ID: 33135465 A Systematic Investigation of Human DNA Preservation in Medieval Skeletons Scientific Reports. 10, 2020 | Pubmed ID: 33106554 Identification of African Swine Fever Virus-like Elements in the Soft Tick Genome Provides Insights into the Virus' Evolution BMC Biology. 10, 2020 | Pubmed ID: 33032594 Author Correction: Ancient Genomes Reveal Social and Genetic Structure of Late Neolithic Switzerland Nature Communications. 09, 2020 | Pubmed ID: 32938921 2000-year-old Pathogen Genomes Reconstructed from Metagenomic Analysis of Egyptian Mummified Individuals BMC Biology. 08, 2020 | Pubmed ID: 32859198 Ancient Bacterial Genomes Reveal a High Diversity of Treponema Pallidum Strains in Early Modern Europe Current Biology : CB. 10, 2020 | Pubmed ID: 32795443 The Immunogenetic Diversity of the HLA System in Mexico Correlates with Underlying Population Genetic Structure Human Immunology. Sep, 2020 | Pubmed ID: 32651014 An Ancient View on Host Pathogen Interaction Across Time and Space Current Opinion in Immunology. 08, 2020 | Pubmed ID: 32603999 Ancient Genomes Reveal Complex Patterns of Population Movement, Interaction, and Replacement in Sub-Saharan Africa Science Advances. Jun, 2020 | Pubmed ID: 32582847 Ancient Genome-wide DNA from France Highlights the Complexity of Interactions Between Mesolithic Hunter-gatherers and Neolithic Farmers Science Advances. May, 2020 | Pubmed ID: 32523989 Genomic Insights into the Early Peopling of the Caribbean Science (New York, N.Y.). 07, 2020 | Pubmed ID: 32499399 Ancient Genomes from Northern China Suggest Links Between Subsistence Changes and Human Migration Nature Communications. 06, 2020 | Pubmed ID: 32483115 Genomic History of Neolithic to Bronze Age Anatolia, Northern Levant, and Southern Caucasus Cell. 05, 2020 | Pubmed ID: 32470401 Paleolithic to Bronze Age Siberians Reveal Connections with First Americans and Across Eurasia Cell. 06, 2020 | Pubmed ID: 32437661 A Paleogenomic Reconstruction of the Deep Population History of the Andes Cell. 05, 2020 | Pubmed ID: 32386546 Origin and Health Status of First-Generation Africans from Early Colonial Mexico Current Biology : CB. 06, 2020 | Pubmed ID: 32359431 Ancient Genomes Reveal Social and Genetic Structure of Late Neolithic Switzerland Nature Communications. 04, 2020 | Pubmed ID: 32313080 Emergence of Human-adapted Salmonella Enterica is Linked to the Neolithization Process Nature Ecology & Evolution. 03, 2020 | Pubmed ID: 32094538 Genetic History from the Middle Neolithic to Present on the Mediterranean Island of Sardinia Nature Communications. 02, 2020 | Pubmed ID: 32094358 Ancient DNA Suggests Modern Wolves Trace Their Origin to a Late Pleistocene Expansion from Beringia Molecular Ecology. 05, 2020 | Pubmed ID: 31840921 HOPS: Automated Detection and Authentication of Pathogen DNA in Archaeological Remains Genome Biology. 12, 2019 | Pubmed ID: 31842945 Human Mitochondrial DNA Lineages in Iron-Age Fennoscandia Suggest Incipient Admixture and Eastern Introduction of Farming-related Maternal Ancestry Scientific Reports. 11, 2019 | Pubmed ID: 31729399 Kinship-based Social Inequality in Bronze Age Europe Science (New York, N.Y.). 11, 2019 | Pubmed ID: 31601705 Phylogeography of the Second Plague Pandemic Revealed Through Analysis of Historical Yersinia Pestis Genomes Nature Communications. 10, 2019 | Pubmed ID: 31578321 Large-scale Mitogenomic Analysis of the Phylogeography of the Late Pleistocene Cave Bear Scientific Reports. 08, 2019 | Pubmed ID: 31417104 Ancient Genomes Reveal Yamnaya-Related Ancestry and a Potential Source of Indo-European Speakers in Iron Age Tianshan Current Biology : CB. 08, 2019 | Pubmed ID: 31353181 Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens Annual Review of Microbiology. 09, 2019 | Pubmed ID: 31283430 Ancient DNA Sheds Light on the Genetic Origins of Early Iron Age Philistines Science Advances. 07, 2019 | Pubmed ID: 31281897 Nuclear DNA from Two Early Neandertals Reveals 80,000 Years of Genetic Continuity in Europe Science Advances. 06, 2019 | Pubmed ID: 31249872 Palaeo-Eskimo Genetic Ancestry and the Peopling of Chukotka and North America Nature. 06, 2019 | Pubmed ID: 31168094 Ancient Genomes from Across Western Europe Reveal Early Diversification During the First Pandemic (541-750) Proceedings of the National Academy of Sciences of the United States of America. 06, 2019 | Pubmed ID: 31164419 The Genetic History of Admixture Across Inner Eurasia Nature Ecology & Evolution. 06, 2019 | Pubmed ID: 31036896 Ancient Pathogen Genomics As An emerging Tool for Infectious Disease research Nature Reviews. Genetics. 06, 2019 | Pubmed ID: 30953039 Late Pleistocene Human Genome Suggests a Local Origin for the First Farmers of Central Anatolia Nature Communications. 03, 2019 | Pubmed ID: 30890703 Survival of Late Pleistocene Hunter-Gatherer Ancestry in the Iberian Peninsula Current Biology : CB. 04, 2019 | Pubmed ID: 30880015 Stable Isotopes Reveal Patterns of Diet and Mobility in the Last Neandertals and First Modern Humans in Europe Scientific Reports. 03, 2019 | Pubmed ID: 30872714 Ancient Human Genome-wide Data from a 3000-year Interval in the Caucasus Corresponds with Eco-geographic Regions Nature Communications. 02, 2019 | Pubmed ID: 30713341 Ancient Fennoscandian Genomes Reveal Origin and Spread of Siberian Ancestry in Europe Nature Communications. 11, 2018 | Pubmed ID: 30479341 Reconstructing the Deep Population History of Central and South America Cell. 11, 2018 | Pubmed ID: 30415837 Bronze Age Population Dynamics and the Rise of Dairy Pastoralism on the Eastern Eurasian Steppe Proceedings of the National Academy of Sciences of the United States of America. 11, 2018 | Pubmed ID: 30397125 Ratio of Mitochondrial to Nuclear DNA Affects Contamination Estimates in Ancient DNA Analysis Scientific Reports. 09, 2018 | Pubmed ID: 30232341 Nonhuman Primates Across Sub-Saharan Africa Are Infected with the Yaws Bacterium Treponema Pallidum Subsp. Pertenue Emerging Microbes & Infections. 09, 2018 | Pubmed ID: 30228266 Understanding 6th-century Barbarian Social Organization and Migration Through Paleogenomics Nature Communications. 09, 2018 | Pubmed ID: 30206220 Ancient Genome-wide Analyses Infer Kinship Structure in an Early Medieval Alemannic Graveyard Science Advances. 09, 2018 | Pubmed ID: 30191172 Reconciling Material Cultures in Archaeology with Genetic Data: The Nomenclature of Clusters Emerging from Archaeogenomic Analysis Scientific Reports. 08, 2018 | Pubmed ID: 30158639 Differential Preservation of Endogenous Human and Microbial DNA in Dental Calculus and Dentin Scientific Reports. 06, 2018 | Pubmed ID: 29959351 Historic Treponema Pallidum Genomes from Colonial Mexico Retrieved from Archaeological Remains PLoS Neglected Tropical Diseases. 06, 2018 | Pubmed ID: 29927932 Genetic Diversity of the HLA System in Human Populations from the Sierra (Andean), Oriente (Amazonian) and Costa (Coastal) Regions of Ecuador Human Immunology. Sep, 2018 | Pubmed ID: 29908213 Analysis of 3800-year-old Yersinia Pestis Genomes Suggests Bronze Age Origin for Bubonic Plague Nature Communications. 06, 2018 | Pubmed ID: 29884871 Ancient Genomes Reveal a High Diversity of Mycobacterium Leprae in Medieval Europe PLoS Pathogens. 05, 2018 | Pubmed ID: 29746563 Neolithic and Medieval Virus Genomes Reveal Complex Evolution of Hepatitis B ELife. 05, 2018 | Pubmed ID: 29745896 Author Correction: The Genetic Prehistory of the Baltic Sea Region Nature Communications. 04, 2018 | Pubmed ID: 29643405 Reconstructing the Genetic History of Late Neanderthals Nature. 03, 2018 | Pubmed ID: 29562232 Pleistocene North African Genomes Link Near Eastern and Sub-Saharan African Human Populations Science (New York, N.Y.). 05, 2018 | Pubmed ID: 29545507 Language Continuity Despite Population Replacement in Remote Oceania Nature Ecology & Evolution. Apr, 2018 | Pubmed ID: 29487365 Ancient Genomes Revisit the Ancestry of Domestic and Przewalski's Horses Science (New York, N.Y.). Apr, 2018 | Pubmed ID: 29472442 The Beaker Phenomenon and the Genomic Transformation of Northwest Europe Nature. 03, 2018 | Pubmed ID: 29466337 The Genomic History of Southeastern Europe Nature. 03, 2018 | Pubmed ID: 29466330 The Rate and Potential Relevance of New Mutations in a Colonizing Plant Lineage PLoS Genetics. 02, 2018 | Pubmed ID: 29432421 Inferring Genetic Origins and Phenotypic Traits of George Bähr, the Architect of the Dresden Frauenkirche Scientific Reports. 02, 2018 | Pubmed ID: 29391530 The Genetic Prehistory of the Baltic Sea Region Nature Communications. 01, 2018 | Pubmed ID: 29382937 Salmonella Enterica Genomes from Victims of a Major Sixteenth-century Epidemic in Mexico Nature Ecology & Evolution. 03, 2018 | Pubmed ID: 29335577 Central European Woolly Mammoth Population Dynamics: Insights from Late Pleistocene Mitochondrial Genomes Scientific Reports. 12, 2017 | Pubmed ID: 29255197 The Stone Age Plague and Its Persistence in Eurasia Current Biology : CB. Dec, 2017 | Pubmed ID: 29174893 The Maternal Genetic Make-up of the Iberian Peninsula Between the Neolithic and the Early Bronze Age Scientific Reports. Nov, 2017 | Pubmed ID: 29142317 Reconstructing Prehistoric African Population Structure Cell. Sep, 2017 | Pubmed ID: 28938123 Female Exogamy and Gene Pool Diversification at the Transition from the Final Neolithic to the Early Bronze Age in Central Europe Proceedings of the National Academy of Sciences of the United States of America. 09, 2017 | Pubmed ID: 28874531 Reconstructing Asian Faunal Introductions to Eastern Africa from Multi-proxy Biomolecular and Archaeological Datasets PloS One. 2017 | Pubmed ID: 28817590 Genetic Origins of the Minoans and Mycenaeans Nature. 08, 2017 | Pubmed ID: 28783727 Genomic Estimation of Complex Traits Reveals Ancient Maize Adaptation to Temperate North America Science (New York, N.Y.). 08, 2017 | Pubmed ID: 28774930 Mining Metagenomic Data Sets for Ancient DNA: Recommended Protocols for Authentication Trends in Genetics : TIG. 08, 2017 | Pubmed ID: 28688671 Deeply Divergent Archaic Mitochondrial Genome Provides Lower Time Boundary for African Gene Flow into Neanderthals Nature Communications. 07, 2017 | Pubmed ID: 28675384 Ancient Egyptian Mummy Genomes Suggest an Increase of Sub-Saharan African Ancestry in Post-Roman Periods Nature Communications. 05, 2017 | Pubmed ID: 28556824 A Robust Framework for Microbial Archaeology Annual Review of Genomics and Human Genetics. 08, 2017 | Pubmed ID: 28460196 Genetic Structure of Tibetan Populations in Gansu Revealed by Forensic STR Loci Scientific Reports. 01, 2017 | Pubmed ID: 28112227 Early Cave Art and Ancient DNA Record the Origin of European Bison Nature Communications. 10, 2016 | Pubmed ID: 27754477 A Molecular Approach to the Sexing of the Triple Burial at the Upper Paleolithic Site of Dolní Věstonice PloS One. 2016 | Pubmed ID: 27706187 Genomic Insights into the Peopling of the Southwest Pacific Nature. Oct, 2016 | Pubmed ID: 27698418 Effect of X-ray Irradiation on Ancient DNA in Sub-fossil Bones - Guidelines for Safe X-ray Imaging Scientific Reports. 09, 2016 | Pubmed ID: 27615365 A High-Coverage Yersinia Pestis Genome from a Sixth-Century Justinianic Plague Victim Molecular Biology and Evolution. 11, 2016 | Pubmed ID: 27578768 Genomic Analysis of 6,000-year-old Cultivated Grain Illuminates the Domestication History of Barley Nature Genetics. 09, 2016 | Pubmed ID: 27428749 Neandertal Cannibalism and Neandertal Bones Used As Tools in Northern Europe Scientific Reports. 07, 2016 | Pubmed ID: 27381450 Historical Y. pestis Genomes Reveal the European Black Death As the Source of Ancient and Modern Plague Pandemics Cell Host & Microbe. Jun, 2016 | Pubmed ID: 27281573 Genetic Time Travel Genetics. 05, 2016 | Pubmed ID: 27183562 The Genetic History of Ice Age Europe Nature. 06, 2016 | Pubmed ID: 27135931 Pleistocene Mitochondrial Genomes Suggest a Single Major Dispersal of Non-Africans and a Late Glacial Population Turnover in Europe Current Biology : CB. Mar, 2016 | Pubmed ID: 26853362 Eighteenth Century Yersinia Pestis Genomes Reveal the Long-term Persistence of an Historical Plague Focus ELife. Jan, 2016 | Pubmed ID: 26795402 The 5300-year-old Helicobacter Pylori Genome of the Iceman Science (New York, N.Y.). Jan, 2016 | Pubmed ID: 26744403 Genome-wide Patterns of Selection in 230 Ancient Eurasians Nature. Dec, 2015 | Pubmed ID: 26595274 Rewriting the Central European Early Bronze Age Chronology: Evidence from Large-Scale Radiocarbon Dating PloS One. 2015 | Pubmed ID: 26488413 Tunable Narrowband THz Pulse Generation in Scalable Large Area Photoconductive Antennas Optics Express. Sep, 2011 | Pubmed ID: 21996852 A Draft Genome of Yersinia Pestis from Victims of the Black Death Nature. Oct, 2011 | Pubmed ID: 21993626 Targeted Enrichment of Ancient Pathogens Yielding the PPCP1 Plasmid of Yersinia Pestis from Victims of the Black Death Proceedings of the National Academy of Sciences of the United States of America. Sep, 2011 | Pubmed ID: 21876176 Learning About Human Population History from Ancient and Modern Genomes Nature Reviews. Genetics. Sep, 2011 | Pubmed ID: 21850041 Virus Progeny of Murine Cytomegalovirus Bacterial Artificial Chromosome PSM3fr Show Reduced Growth in Salivary Glands Due to a Fixed Mutation of MCK-2 Journal of Virology. Oct, 2011 | Pubmed ID: 21813614 Genetic History of an Archaic Hominin Group from Denisova Cave in Siberia Nature. Dec, 2010 | Pubmed ID: 21179161 Technical Aspects of the WaveLight FS200 Femtosecond Laser Journal of Refractive Surgery (Thorofare, N.J. : 1995). Oct, 2010 | Pubmed ID: 20954680 Targeted Investigation of the Neandertal Genome by Array-based Sequence Capture Science (New York, N.Y.). May, 2010 | Pubmed ID: 20448179 A Draft Sequence of the Neandertal Genome Science (New York, N.Y.). May, 2010 | Pubmed ID: 20448178 The Complete Mitochondrial DNA Genome of an Unknown Hominin from Southern Siberia Nature. Apr, 2010 | Pubmed ID: 20336068 A Complete MtDNA Genome of an Early Modern Human from Kostenki, Russia Current Biology : CB. Feb, 2010 | Pubmed ID: 20045327 Removal of Deaminated Cytosines and Detection of in Vivo Methylation in Ancient DNA Nucleic Acids Research. Apr, 2010 | Pubmed ID: 20028723 The Neandertal Genome and Ancient DNA Authenticity The EMBO Journal. Sep, 2009 | Pubmed ID: 19661919 Targeted Retrieval and Analysis of Five Neandertal MtDNA Genomes Science (New York, N.Y.). Jul, 2009 | Pubmed ID: 19608918 Linkage Disequilibrium Extends Across Putative Selected Sites in FOXP2 Molecular Biology and Evolution. Oct, 2009 | Pubmed ID: 19608635 Genetic Characterization of the ABO Blood Group in Neandertals BMC Evolutionary Biology. 2008 | Pubmed ID: 19108732 A Complete Neandertal Mitochondrial Genome Sequence Determined by High-throughput Sequencing Cell. Aug, 2008 | Pubmed ID: 18692465 Mitochondrial Genomes Reveal an Explosive Radiation of Extinct and Extant Bears Near the Miocene-Pliocene Boundary BMC Evolutionary Biology. 2008 | Pubmed ID: 18662376 From Micrograms to Picograms: Quantitative PCR Reduces the Material Demands of High-throughput Sequencing Nucleic Acids Research. Jan, 2008 | Pubmed ID: 18084031 The Derived FOXP2 Variant of Modern Humans Was Shared with Neandertals Current Biology : CB. Nov, 2007 | Pubmed ID: 17949978 Neanderthals in Central Asia and Siberia Nature. Oct, 2007 | Pubmed ID: 17914357 Patterns of Damage in Genomic DNA Sequences from a Neandertal Proceedings of the National Academy of Sciences of the United States of America. Sep, 2007 | Pubmed ID: 17715061 Multiplex Amplification of Ancient DNA Nature Protocols. 2006 | Pubmed ID: 17406302 Sequencing and Analysis of Neanderthal Genomic DNA Science (New York, N.Y.). Nov, 2006 | Pubmed ID: 17110569 Analysis of One Million Base Pairs of Neanderthal DNA Nature. Nov, 2006 | Pubmed ID: 17108958 Mitochondrial DNA of an Iberian Neandertal Suggests a Population Affinity with Other European Neandertals Current Biology : CB. Aug, 2006 | Pubmed ID: 16920606 Multiplex Amplification of the Mammoth Mitochondrial Genome and the Evolution of Elephantidae Nature. Feb, 2006 | Pubmed ID: 16362058 Functional Analysis of Human and Chimpanzee Promoters Genome Biology. 2005 | Pubmed ID: 15998446 Genomic Sequencing of Pleistocene Cave Bears Science (New York, N.Y.). Jul, 2005 | Pubmed ID: 15933159 Genetic Analyses from Ancient DNA Annual Review of Genetics. 2004 | Pubmed ID: 15568989 Optimized Bone Sampling Protocols for the Retrieval of Ancient DNA from Archaeological Remains Cody E. Parker1,2, Kirsten I. Bos1,3, Wolfgang Haak1,3, Johannes Krause1,3 1Department of Archaeogenetics, Max Planck Institute for the Science of Human History, 2School of Human Evolution and Social Change, Arizona State University, 3Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology JoVE 63250 Genetics Primer Extension Capture: Targeted Sequence Retrieval from Heavily Degraded DNA Sources Adrian W. Briggs1, Jeffrey M. Good1, Richard E. Green1, Johannes Krause1, Tomislav Maricic1, Udo Stenzel1, Svante Pääbo1 1Max-Planck Institute for Evolutionary Anthropology, Leipzig JoVE 1573 Biology
Optimized Bone Sampling Protocols for the Retrieval of Ancient DNA from Archaeological Remains Cody E. Parker1,2, Kirsten I. Bos1,3, Wolfgang Haak1,3, Johannes Krause1,3 1Department of Archaeogenetics, Max Planck Institute for the Science of Human History, 2School of Human Evolution and Social Change, Arizona State University, 3Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology JoVE 63250 Genetics
Primer Extension Capture: Targeted Sequence Retrieval from Heavily Degraded DNA Sources Adrian W. Briggs1, Jeffrey M. Good1, Richard E. Green1, Johannes Krause1, Tomislav Maricic1, Udo Stenzel1, Svante Pääbo1 1Max-Planck Institute for Evolutionary Anthropology, Leipzig JoVE 1573 Biology
