Josh D. Neufeld Department of Biology University of Waterloo Biography Publications Institution JoVE Articles Josh D. Neufeld has not added a biography. If you are Josh D. Neufeld and would like to personalize this page please email our Author Liaison for assistance. Publications PANDAseq: PAired-eND Assembler for Illumina Sequences BMC Bioinformatics. Feb, 2012 | Pubmed ID: 22333067 Nonlinear Electrophoresis for Purification of Soil DNA for Metagenomics Journal of Microbiological Methods. Jan, 2012 | Pubmed ID: 22056233 Omics for Understanding Microbial Functional Dynamics Environmental Microbiology. Jan, 2012 | Pubmed ID: 21651688 Butyric Acid- and Dimethyl Disulfide-assimilating Microorganisms in a Biofilter Treating Air Emissions from a Livestock Facility Applied and Environmental Microbiology. Dec, 2011 | Pubmed ID: 22003018 Active Autotrophic Ammonia-oxidizing Bacteria in Biofilm Enrichments from Simulated Creek Ecosystems at Two Ammonium Concentrations Respond to Temperature Manipulation Applied and Environmental Microbiology. Oct, 2011 | Pubmed ID: 21890674 Aquarium Nitrification Revisited: Thaumarchaeota Are the Dominant Ammonia Oxidizers in Freshwater Aquarium Biofilters PloS One. 2011 | Pubmed ID: 21858055 Prevalence of Anaerobic Ammonium-oxidizing Bacteria in Contaminated Groundwater Environmental Science & Technology. Sep, 2011 | Pubmed ID: 21786759 Minimum Information About a Marker Gene Sequence (MIMARKS) and Minimum Information About Any (x) Sequence (MIxS) Specifications Nature Biotechnology. May, 2011 | Pubmed ID: 21552244 Generation of Multimillion-sequence 16S RRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-end Illumina Reads Applied and Environmental Microbiology. Jun, 2011 | Pubmed ID: 21460107 Metagenomic Analysis of Isotopically Enriched DNA Methods in Molecular Biology (Clifton, N.J.). 2010 | Pubmed ID: 20830556 Substrate-specific Clades of Active Marine Methylotrophs Associated with a Phytoplankton Bloom in a Temperate Coastal Environment Applied and Environmental Microbiology. Dec, 2008 | Pubmed ID: 18849453 Methane Assimilation and Trophic Interactions with Marine Methylomicrobium in Deep-water Coral Reef Sediment off the Coast of Norway FEMS Microbiology Ecology. Nov, 2008 | Pubmed ID: 18811651 Revealing the Uncultivated Majority: Combining DNA Stable-isotope Probing, Multiple Displacement Amplification and Metagenomic Analyses of Uncultivated Methylocystis in Acidic Peatlands Environmental Microbiology. Oct, 2008 | Pubmed ID: 18631364 Scratching the Surface of the Rare Biosphere with Ribosomal Sequence Tag Primers FEMS Microbiology Letters. Jun, 2008 | Pubmed ID: 18429998 Marine Methylotrophs Revealed by Stable-isotope Probing, Multiple Displacement Amplification and Metagenomics Environmental Microbiology. Jun, 2008 | Pubmed ID: 18294205 Something from (almost) Nothing: the Impact of Multiple Displacement Amplification on Microbial Ecology The ISME Journal. Mar, 2008 | Pubmed ID: 18256705 Stable-isotope Probing Implicates Methylophaga Spp and Novel Gammaproteobacteria in Marine Methanol and Methylamine Metabolism The ISME Journal. Oct, 2007 | Pubmed ID: 18043650 Witnessing the Last Supper of Uncultivated Microbial Cells with Raman-FISH The ISME Journal. Aug, 2007 | Pubmed ID: 18043637 Who Eats What, Where and When? Isotope-labelling Experiments Are Coming of Age The ISME Journal. Jun, 2007 | Pubmed ID: 18043620 DNA Stable-isotope Probing Nature Protocols. 2007 | Pubmed ID: 17446886 Handlebar: a Flexible, Web-based Inventory Manager for Handling Barcoded Samples BioTechniques. Mar, 2007 | Pubmed ID: 17390536 Methodological Considerations for the Use of Stable Isotope Probing in Microbial Ecology Microbial Ecology. Apr, 2007 | Pubmed ID: 17072677 Composition of Microbial Communities in Hexachlorocyclohexane (HCH) Contaminated Soils from Spain Revealed with a Habitat-specific Microarray Environmental Microbiology. Jan, 2006 | Pubmed ID: 16343328 Distribution and Phylogeny of Hexachlorocyclohexane-degrading Bacteria in Soils from Spain Environmental Microbiology. Jan, 2006 | Pubmed ID: 16343322 Unexpectedly High Bacterial Diversity in Arctic Tundra Relative to Boreal Forest Soils, Revealed by Serial Analysis of Ribosomal Sequence Tags Applied and Environmental Microbiology. Oct, 2005 | Pubmed ID: 16204479 Fluorophore-labeled Primers Improve the Sensitivity, Versatility, and Normalization of Denaturing Gradient Gel Electrophoresis Applied and Environmental Microbiology. Aug, 2005 | Pubmed ID: 16085891 Serial Analysis of Ribosomal Sequence Tags (SARST): a High-throughput Method for Profiling Complex Microbial Communities Environmental Microbiology. Feb, 2004 | Pubmed ID: 14756878 DNA Stable-Isotope Probing (DNA-SIP) Eric A. Dunford1, Josh D. Neufeld1 1Department of Biology, University of Waterloo JoVE 2027 Biology
DNA Stable-Isotope Probing (DNA-SIP) Eric A. Dunford1, Josh D. Neufeld1 1Department of Biology, University of Waterloo JoVE 2027 Biology