James J. De Yoreo Physical and Computational Sciences Directorate Pacific Northwest National Laboratory Biography Publications Institution JoVE Articles James J. De Yoreo has not added a biography. If you are James J. De Yoreo and would like to personalize this page please email our Author Liaison for assistance. Publications Early-Stage Aggregation and Crystalline Interactions of Peptoid Nanomembranes The Journal of Physical Chemistry Letters. Jul, 2021 | Pubmed ID: 34181429 Ion-dependent Protein-surface Interactions from Intrinsic Solvent Response Proceedings of the National Academy of Sciences of the United States of America. Jun, 2021 | Pubmed ID: 34172582 Revealing Au As Elementary Clusters During the Early Formation of Au Nanocrystals The Journal of Physical Chemistry Letters. Jul, 2021 | Pubmed ID: 34156865 Programmable Two-dimensional Nanocrystals Assembled from POSS-containing Peptoids As Efficient Artificial Light-harvesting Systems Science Advances. May, 2021 | Pubmed ID: 33990330 Disentangling Rotational Dynamics and Ordering Transitions in a System of Self-Organizing Protein Nanorods Rotationally Invariant Latent Representations ACS Nano. 04, 2021 | Pubmed ID: 33861068 Author Correction: Design of Biologically Active Binary Protein 2D Materials Nature. Mar, 2021 | Pubmed ID: 33654323 Self-similar Mesocrystals Form Via Interface-driven Nucleation and Assembly Nature. 02, 2021 | Pubmed ID: 33597761 Nanoparticle-Mediated Assembly of Peptoid Nanosheets Functionalized with Solid-Binding Proteins: Designing Heterostructures for Hierarchy Nano Letters. 02, 2021 | Pubmed ID: 33555891 Design of Biologically Active Binary Protein 2D Materials Nature. 01, 2021 | Pubmed ID: 33408408 Peptoid-directed Assembly of CdSe Nanoparticles Nanoscale. Jan, 2021 | Pubmed ID: 33404572 Quantifying the Dynamics of Protein Self-Organization Using Deep Learning Analysis of Atomic Force Microscopy Data Nano Letters. 01, 2021 | Pubmed ID: 33306401 Engineering Biomolecular Self-Assembly at Solid-Liquid Interfaces Advanced Materials (Deerfield Beach, Fla.). Jun, 2021 | Pubmed ID: 32627885 Atomic Force Microscopy-Based Force Spectroscopy and Multiparametric Imaging of Biomolecular and Cellular Systems Chemical Reviews. Nov, 2020 | Pubmed ID: 33166471 What Atoms Do when They Get Together Nature Chemistry. 10, 2020 | Pubmed ID: 32968229 Covalently Linked, Two-Dimensional Quantum Dot Assemblies Langmuir : the ACS Journal of Surfaces and Colloids. Aug, 2020 | Pubmed ID: 32787121 Assembly of a Patchy Protein into Variable 2D Lattices Via Tunable Multiscale Interactions Nature Communications. 07, 2020 | Pubmed ID: 32724112 Negatively Charged Lipids Exhibit Negligible Effects on the Water Repellency of Montmorillonite Films ACS Omega. Jun, 2020 | Pubmed ID: 32548396 Correlating Inter-particle Forces and Particle Shape to Shear-induced Aggregation/fragmentation and Rheology for Dilute Anisotropic Particle Suspensions: A Complementary Study Via Capillary Rheometry and In-situ Small and Ultra-small Angle X-ray Scattering Journal of Colloid and Interface Science. Sep, 2020 | Pubmed ID: 32413780 Connecting Energetics to Dynamics in Particle Growth by Oriented Attachment Using Real-time Observations Nature Communications. 02, 2020 | Pubmed ID: 32098968 Visualization of Aluminum Ions at the Mica Water Interface Links Hydrolysis State-to-Surface Potential and Particle Adhesion Journal of the American Chemical Society. 04, 2020 | Pubmed ID: 32079390 Two-Dimensional Van Der Waals Nanoplatelets with Robust Ferromagnetism Nano Letters. Mar, 2020 | Pubmed ID: 32031382 Shape-preserving Amorphous-to-crystalline Transformation of CaCO Revealed by in Situ TEM Proceedings of the National Academy of Sciences of the United States of America. 02, 2020 | Pubmed ID: 32015117 Sequence-Structure-Binding Relationships Reveal Adhesion Behavior of the Car9 Solid-Binding Peptide: An Integrated Experimental and Simulation Study Journal of the American Chemical Society. 02, 2020 | Pubmed ID: 31934768 Organothiol Monolayer Formation Directly on Muscovite Mica Angewandte Chemie (International Ed. in English). Feb, 2020 | Pubmed ID: 31765512 Synthesis of 2D Hexagonal Hematite Nanosheets and the Crystal Growth Mechanism Inorganic Chemistry. Dec, 2019 | Pubmed ID: 31755255 Revisiting the Growth Mechanism of Hierarchical Semiconductor Nanostructures: The Role of Secondary Nucleation in Branch Formation The Journal of Physical Chemistry Letters. Nov, 2019 | Pubmed ID: 31565949 Cr(III) Adsorption by Cluster Formation on Boehmite Nanoplates in Highly Alkaline Solution Environmental Science & Technology. Sep, 2019 | Pubmed ID: 31442378 Connecting Wettability, Topography, and Chemistry in a Simple Lipid-montmorillonite System Journal of Colloid and Interface Science. Nov, 2019 | Pubmed ID: 31401482 Controlling Protein Assembly on Inorganic Crystals Through Designed Protein Interfaces Nature. 07, 2019 | Pubmed ID: 31292559 Hierarchical Assembly of Peptoid-Based Cylindrical Micelles Exhibiting Efficient Resonance Energy Transfer in Aqueous Solution Angewandte Chemie (International Ed. in English). 08, 2019 | Pubmed ID: 31211884 Organic-mineral Interfacial Chemistry Drives Heterogeneous Nucleation of Sr-rich (Ba , Sr )SO from Undersaturated Solution Proceedings of the National Academy of Sciences of the United States of America. 07, 2019 | Pubmed ID: 31113880 Self-Assembling 2D Arrays with De Novo Protein Building Blocks Journal of the American Chemical Society. 06, 2019 | Pubmed ID: 31050411 Monitoring Solvent Dynamics and Ion Associations in the Formation of Cubic Octamer Polyanion in Tetramethylammonium Silicate Solutions Physical Chemistry Chemical Physics : PCCP. Feb, 2019 | Pubmed ID: 30762854 Anion Exchange and the Quantum-Cutting Energy Threshold in Ytterbium-Doped CsPb(ClBr ) Perovskite Nanocrystals Nano Letters. 02, 2019 | Pubmed ID: 30694072 Direct Observation of the Orientational Anisotropy of Buried Hydroxyl Groups Inside Muscovite Mica Journal of the American Chemical Society. 02, 2019 | Pubmed ID: 30615440 Addressing Some of the Technical Challenges Associated with Liquid Phase S/TEM Studies of Particle Nucleation, Growth and Assembly Micron (Oxford, England : 1993). 03, 2019 | Pubmed ID: 30572190 Control of Calcium Phosphate Nucleation and Transformation Through Interactions of Enamelin and Amelogenin Exhibits the "Goldilocks Effect" Crystal Growth & Design. Dec, 2018 | Pubmed ID: 32280310 Building Two-dimensional Materials One Row at a Time: Avoiding the Nucleation Barrier Science (New York, N.Y.). 12, 2018 | Pubmed ID: 30523105 Carbon Nanotube Porins in Amphiphilic Block Copolymers As Fully Synthetic Mimics of Biological Membranes Advanced Materials (Deerfield Beach, Fla.). Dec, 2018 | Pubmed ID: 30368926 Accessing Crystal-crystal Interaction Forces with Oriented Nanocrystal Atomic Force Microscopy Probes Nature Protocols. 09, 2018 | Pubmed ID: 30190550 Impact of Solution Chemistry and Particle Anisotropy on the Collective Dynamics of Oriented Aggregation ACS Nano. Oct, 2018 | Pubmed ID: 30180540 Near Surface Nucleation and Particle Mediated Growth of Colloidal Au Nanocrystals Nanoscale. Jul, 2018 | Pubmed ID: 29900468 Controlled Synthesis of Highly-branched Plasmonic Gold Nanoparticles Through Peptoid Engineering Nature Communications. 06, 2018 | Pubmed ID: 29899378 Peptide-Based Bioinspired Approach to Regrowing Multilayered Aprismatic Enamel ACS Omega. Mar, 2018 | Pubmed ID: 29623301 Supersaturated Calcium Carbonate Solutions Are Classical Science Advances. 01, 2018 | Pubmed ID: 29387793 Defect-Free Encapsulation of Fe in 2D Fused Organic Networks As a Durable Oxygen Reduction Electrocatalyst Journal of the American Chemical Society. 02, 2018 | Pubmed ID: 29298388 Using Biomimetic Polymers in Place of Noncollagenous Proteins to Achieve Functional Remineralization of Dentin Tissues ACS Biomaterials Science & Engineering. Dec, 2017 | Pubmed ID: 29479561 Author Correction: Developing a Molecular Picture of Soil Organic Matter-mineral Interactions by Quantifying Organo-mineral Binding Nature Communications. 12, 2017 | Pubmed ID: 29208904 A Classical View on Nonclassical Nucleation Proceedings of the National Academy of Sciences of the United States of America. 09, 2017 | Pubmed ID: 28874584 Developing a Molecular Picture of Soil Organic Matter-mineral Interactions by Quantifying Organo-mineral Binding Nature Communications. 08, 2017 | Pubmed ID: 28855506 Trends in Mica-mica Adhesion Reflect the Influence of Molecular Details on Long-range Dispersion Forces Underlying Aggregation and Coalignment Proceedings of the National Academy of Sciences of the United States of America. Jul, 2017 | Pubmed ID: 28679632 Direction-specific Van Der Waals Attraction Between Rutile TiO Nanocrystals Science (New York, N.Y.). 04, 2017 | Pubmed ID: 28450642 Tuning Crystallization Pathways Through Sequence Engineering of Biomimetic Polymers Nature Materials. 07, 2017 | Pubmed ID: 28414316 Trace Uranium Partitioning in a Multiphase Nano-FeOOH System Environmental Science & Technology. May, 2017 | Pubmed ID: 28407467 The Energetics of Prenucleation Clusters in Lattice Solutions The Journal of Chemical Physics. Dec, 2016 | Pubmed ID: 28799379 Double Epitaxy As a Paradigm for Templated Growth of Highly Ordered Three-Dimensional Mesophase Crystals ACS Nano. Sep, 2016 | Pubmed ID: 27576108 Direct Observation of Mineral-organic Composite Formation Reveals Occlusion Mechanism Nature Communications. Jan, 2016 | Pubmed ID: 26732046 Matrix Metalloproteinase-20 Mediates Dental Enamel Biomineralization by Preventing Protein Occlusion Inside Apatite Crystals Biomaterials. Jan, 2016 | Pubmed ID: 26513418 Sequence-Defined Energetic Shifts Control the Disassembly Kinetics and Microstructure of Amelogenin Adsorbed Onto Hydroxyapatite (100) Langmuir : the ACS Journal of Surfaces and Colloids. Sep, 2015 | Pubmed ID: 26381243 CRYSTAL GROWTH. Crystallization by Particle Attachment in Synthetic, Biogenic, and Geologic Environments Science (New York, N.Y.). Jul, 2015 | Pubmed ID: 26228157 Effect of Otoconial Proteins Fetuin A, Osteopontin, and Otoconin 90 on the Nucleation and Growth of Calcite Crystal Growth & Design. Jan, 2015 | Pubmed ID: 25709560 Calcium Carbonate Nucleation Driven by Ion Binding in a Biomimetic Matrix Revealed by in Situ Electron Microscopy Nature Materials. Apr, 2015 | Pubmed ID: 25622001 Energetic Basis for the Molecular-scale Organization of Bone Proceedings of the National Academy of Sciences of the United States of America. Jan, 2015 | Pubmed ID: 25540415 In Situ TEM Imaging of CaCO₃ Nucleation Reveals Coexistence of Direct and Indirect Pathways Science (New York, N.Y.). Sep, 2014 | Pubmed ID: 25190792 Investigating Processes of Nanocrystal Formation and Transformation Via Liquid Cell TEM Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. Apr, 2014 | Pubmed ID: 24625923 Reconciling Disparate Views of Template-directed Nucleation Through Measurement of Calcite Nucleation Kinetics and Binding Energies Proceedings of the National Academy of Sciences of the United States of America. Jan, 2014 | Pubmed ID: 24434555 Methods in Enzymology. Research Methods in Biomineralization Science. Preface Methods in Enzymology. 2013 | Pubmed ID: 24188783 Design, Fabrication, and Applications of in Situ Fluid Cell TEM Methods in Enzymology. 2013 | Pubmed ID: 24188766 Polysaccharide Chemistry Regulates Kinetics of Calcite Nucleation Through Competition of Interfacial Energies Proceedings of the National Academy of Sciences of the United States of America. Jun, 2013 | Pubmed ID: 23690577 Crystal Nucleation: More Than One Pathway Nature Materials. Apr, 2013 | Pubmed ID: 23511575 The Dynamics and Energetics of Matrix Assembly and Mineralization Calcified Tissue International. Oct, 2013 | Pubmed ID: 23460339 Visualizing Solution Structure at Solid-Liquid Interfaces using Three-Dimensional Fast Force Mapping Elias Nakouzi1, Sakshi Yadav1, Benjamin A. Legg1, Shuai Zhang1,2, Jinhui Tao1, Christopher J. Mundy1,3, Gregory K. Schenter1,4, Jaehun Chun1,5, James J. De Yoreo1,2 1Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, 2Department of Materials Science and Engineering, University of Washington, 3Department of Chemical Engineering, University of Washington, 4Department of Chemistry, Washington State University, 5CUNY City College of New York JoVE 62585 Chemistry
Visualizing Solution Structure at Solid-Liquid Interfaces using Three-Dimensional Fast Force Mapping Elias Nakouzi1, Sakshi Yadav1, Benjamin A. Legg1, Shuai Zhang1,2, Jinhui Tao1, Christopher J. Mundy1,3, Gregory K. Schenter1,4, Jaehun Chun1,5, James J. De Yoreo1,2 1Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, 2Department of Materials Science and Engineering, University of Washington, 3Department of Chemical Engineering, University of Washington, 4Department of Chemistry, Washington State University, 5CUNY City College of New York JoVE 62585 Chemistry