Amanda G. Paulovich

Publications

• Sequential Multiplexed Analyte Quantification Using Peptide Immunoaffinity Enrichment Coupled to Mass Spectrometry
  Molecular & Cellular Proteomics : MCP. Dec, 2011  |   Pubmed ID: 22203691
• Inter-laboratory Evaluation of Automated, Multiplexed Peptide Immunoaffinity Enrichment Coupled to Multiple Reaction Monitoring Mass Spectrometry for Quantifying Proteins in Plasma
  Molecular & Cellular Proteomics : MCP. Dec, 2011  |   Pubmed ID: 22199228
• Peptide Immunoaffinity Enrichment Coupled with Mass Spectrometry for Peptide and Protein Quantification
  Clinics in Laboratory Medicine. Sep, 2011  |   Pubmed ID: 21907104
• A Targeted Proteomics-based Pipeline for Verification of Biomarkers in Plasma
  Nature Biotechnology. Jul, 2011  |   Pubmed ID: 21685906
• Proteome and Transcriptome Profiles of a Her2/Neu-driven Mouse Model of Breast Cancer
  Proteomics. Clinical Applications. Apr, 2011  |   Pubmed ID: 21448875
• Blood-based Detection of Radiation Exposure in Humans Based on Novel Phospho-Smc1 ELISA
  Radiation Research. Mar, 2011  |   Pubmed ID: 21388270
• Evaluation of Large Scale Quantitative Proteomic Assay Development Using Peptide Affinity-based Mass Spectrometry
  Molecular & Cellular Proteomics : MCP. Apr, 2011  |   Pubmed ID: 21245105
• Blood-Based Detection of Radiation Exposure in Humans Based on Novel Phospho-Smc1 ELISA
  Radiation Research. Dec, 2010  |   Pubmed ID: 21171809
• Effect of Collision Energy Optimization on the Measurement of Peptides by Selected Reaction Monitoring (SRM) Mass Spectrometry
  Analytical Chemistry. Dec, 2010  |   Pubmed ID: 21090646
• The Saccharomyces Cerevisiae RAD9, RAD17 and RAD24 Genes Are Required for Suppression of Mutagenic Post-replicative Repair During Chronic DNA Damage
  DNA Repair. Jul, 2010  |   Pubmed ID: 20472512
• Automated Screening of Monoclonal Antibodies for SISCAPA Assays Using a Magnetic Bead Processor and Liquid Chromatography-selected Reaction Monitoring-mass Spectrometry
  Journal of Immunological Methods. Feb, 2010  |   Pubmed ID: 19961853
• Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography-tandem Mass Spectrometry
  Journal of Proteome Research. Feb, 2010  |   Pubmed ID: 19921851
• Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance
  Molecular & Cellular Proteomics : MCP. Feb, 2010  |   Pubmed ID: 19858499
• An Automated and Multiplexed Method for High Throughput Peptide Immunoaffinity Enrichment and Multiple Reaction Monitoring Mass Spectrometry-based Quantification of Protein Biomarkers
  Molecular & Cellular Proteomics : MCP. Jan, 2010  |   Pubmed ID: 19843560
• Performance Metrics for Liquid Chromatography-tandem Mass Spectrometry Systems in Proteomics Analyses
  Molecular & Cellular Proteomics : MCP. Feb, 2010  |   Pubmed ID: 19837981
• Antibody-based Screen for Ionizing Radiation-dependent Changes in the Mammalian Proteome for Use in Biodosimetry
  Radiation Research. May, 2009  |   Pubmed ID: 19580490
• Multi-site Assessment of the Precision and Reproducibility of Multiple Reaction Monitoring-based Measurements of Proteins in Plasma
  Nature Biotechnology. Jul, 2009  |   Pubmed ID: 19561596
• The Evolving Role of Mass Spectrometry in Cancer Biomarker Discovery
  Cancer Biology & Therapy. Jun, 2009  |   Pubmed ID: 19502776
• A Radiation-derived Gene Expression Signature Predicts Clinical Outcome for Breast Cancer Patients
  Radiation Research. Feb, 2009  |   Pubmed ID: 19267539
• A Human Proteome Detection and Quantitation Project
  Molecular & Cellular Proteomics : MCP. May, 2009  |   Pubmed ID: 19131327
• The Interface Between Biomarker Discovery and Clinical Validation: The Tar Pit of the Protein Biomarker Pipeline
  Proteomics. Clinical Applications. Oct, 2008  |   Pubmed ID: 20976028
• Integrated Pipeline for Mass Spectrometry-based Discovery and Confirmation of Biomarkers Demonstrated in a Mouse Model of Breast Cancer
  Journal of Proteome Research. Oct, 2007  |   Pubmed ID: 17711321
• Head-to-head Comparison of Serum Fractionation Techniques
  Journal of Proteome Research. Feb, 2007  |   Pubmed ID: 17269739
• Antibody-based Enrichment of Peptides on Magnetic Beads for Mass-spectrometry-based Quantification of Serum Biomarkers
  Analytical Biochemistry. Mar, 2007  |   Pubmed ID: 17241609
• Normalization Regarding Non-random Missing Values in High-throughput Mass Spectrometry Data
  Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2006  |   Pubmed ID: 17094249
• A Reagent Resource to Identify Proteins and Peptides of Interest for the Cancer Community: a Workshop Report
  Molecular & Cellular Proteomics : MCP. Oct, 2006  |   Pubmed ID: 16867976