Chris Bailey-Kellogg Department of Computer Science Dartmouth College Biography Publications Institution JoVE Articles Chris Bailey-Kellogg has not added a biography. If you are Chris Bailey-Kellogg and would like to personalize this page please email our Author Liaison for assistance. Publications Polyfunctional Fc-Effector Profiles Mediated by IgG Subclass Selection Distinguish RV144 and VAX003 Vaccines Science Translational Medicine. Mar, 2014 | Pubmed ID: 24648341 Gene and Protein Sequence Optimization for High Level Production of Fully Active and Aglycosylated Lysostaphin in Pichia Pastoris Applied and Environmental Microbiology. Feb, 2014 | Pubmed ID: 24561590 Divergent Antibody Subclass and Specificity Profiles but Not Protective HLA-B Alleles Are Associated with Variable Antibody Effector Function Among HIV-1 Controllers Journal of Virology. Mar, 2014 | Pubmed ID: 24352471 Improved Multiple Sequence Alignments Using Coupled Pattern Mining IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM. Sep-Oct, 2013 | Pubmed ID: 24384701 Improved Multiple Sequence Alignments Using Coupled Pattern Mining IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM. May, 2013 | Pubmed ID: 23648590 Bayesian Reconstruction of P(r) Directly from Two-dimensional Detector Images Via a Markov Chain Monte Carlo Method Journal of Applied Crystallography. Apr, 2013 | Pubmed ID: 23596342 The Two-faced T Cell Epitope: Examining the Host-microbe Interface with JanusMatrix Human Vaccines & Immunotherapeutics. Jul, 2013 | Pubmed ID: 23584251 Natural Variation in Fc Glycosylation of HIV-specific Antibodies Impacts Antiviral Activity The Journal of Clinical Investigation. May, 2013 | Pubmed ID: 23563315 Structure-guided Deimmunization of Therapeutic Proteins Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Feb, 2013 | Pubmed ID: 23384000 Ballast: a Ball-based Algorithm for Structural Motifs Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Feb, 2013 | Pubmed ID: 23383999 Structure-based Redesign of Proteins for Minimal T-cell Epitope Content Journal of Computational Chemistry. Apr, 2013 | Pubmed ID: 23299435 High-throughput, Multiplexed IgG Subclassing of Antigen-specific Antibodies from Clinical Samples Journal of Immunological Methods. Dec, 2012 | Pubmed ID: 23023091 Design and Analysis of Immune-evading Enzymes for ADEPT Therapy Protein Engineering, Design & Selection : PEDS. Oct, 2012 | Pubmed ID: 22898588 Rapid Determination of Multiple Linear Kinase Substrate Motifs by Mass Spectrometry Chemistry & Biology. May, 2012 | Pubmed ID: 22633412 Algorithms for Optimizing Cross-overs in DNA Shuffling BMC Bioinformatics. 2012 | Pubmed ID: 22536901 MMFPh: a Maximal Motif Finder for Phosphoproteomics Datasets Bioinformatics (Oxford, England). Jun, 2012 | Pubmed ID: 22531218 A Divide-and-conquer Approach to Determine the Pareto Frontier for Optimization of Protein Engineering Experiments Proteins. Mar, 2012 | Pubmed ID: 22180081 Planning Combinatorial Disulfide Cross-links for Protein Fold Determination BMC Bioinformatics. 2011 | Pubmed ID: 22168447 A Geometric Arrangement Algorithm for Structure Determination of Symmetric Protein Homo-oligomers from NOEs and RDCs Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Nov, 2011 | Pubmed ID: 22035328 Optimization of Combinatorial Mutagenesis Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Nov, 2011 | Pubmed ID: 21923411 NMR Structural Inference of Symmetric Homo-oligomers Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Dec, 2011 | Pubmed ID: 21718128 Optimization of Therapeutic Proteins to Delete T-cell Epitopes While Maintaining Beneficial Residue Interactions Journal of Bioinformatics and Computational Biology. Apr, 2011 | Pubmed ID: 21523929 A Graphical Method for Analyzing Distance Restraints Using Residual Dipolar Couplings for Structure Determination of Symmetric Protein Homo-oligomers Protein Science : a Publication of the Protein Society. Jun, 2011 | Pubmed ID: 21413097 Accounting for Conformational Entropy in Predicting Binding Free Energies of Protein-protein Interactions Proteins. Feb, 2011 | Pubmed ID: 21120864 Characterizing the Space of Interatomic Distance Distribution Functions Consistent with Solution Scattering Data Journal of Bioinformatics and Computational Biology. Apr, 2010 | Pubmed ID: 20401948 Optimization Algorithms for Functional Deimmunization of Therapeutic Proteins BMC Bioinformatics. 2010 | Pubmed ID: 20380721 Protein Fragment Swapping: a Method for Asymmetric, Selective Site-directed Recombination Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Mar, 2010 | Pubmed ID: 20377457 Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Aug, 2009 | Pubmed ID: 19645597 Protein Design by Sampling an Undirected Graphical Model of Residue Constraints IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM. Jul-Sep, 2009 | Pubmed ID: 19644177 Graphical Models of Protein-protein Interaction Specificity from Correlated Mutations and Interaction Data Proteins. Sep, 2009 | Pubmed ID: 19306342 Optimizing Bayes Error for Protein Structure Model Selection by Stability Mutagenesis Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 2008 | Pubmed ID: 19642272 Contact Replacement for NMR Resonance Assignment Bioinformatics (Oxford, England). Jul, 2008 | Pubmed ID: 18586716 Graphical Models of Residue Coupling in Protein Families IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM. Apr-Jun, 2008 | Pubmed ID: 18451428 Analysis of Self-associating Proteins by Singular Value Decomposition of Solution Scattering Data Biophysical Journal. Jun, 2008 | Pubmed ID: 18212017 Robotic Hierarchical Mixing for the Production of Combinatorial Libraries of Proteins and Small Molecules Journal of Combinatorial Chemistry. Jan-Feb, 2008 | Pubmed ID: 18072752 Algorithms for Selecting Breakpoint Locations to Optimize Diversity in Protein Engineering by Site-directed Protein Recombination Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 2007 | Pubmed ID: 17951810 Hypergraph Model of Multi-residue Interactions in Proteins: Sequentially-constrained Partitioning Algorithms for Optimization of Site-directed Protein Recombination Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Jul-Aug, 2007 | Pubmed ID: 17691894 A Complete Algorithm to Resolve Ambiguity for Intersubunit NOE Assignment in Structure Determination of Symmetric Homo-oligomers Protein Science : a Publication of the Protein Society. Jan, 2007 | Pubmed ID: 17192589 Structure Determination of Symmetric Homo-oligomers by a Complete Search of Symmetry Configuration Space, Using NMR Restraints and Van Der Waals Packing Proteins. Oct, 2006 | Pubmed ID: 16897780 Inferential Backbone Assignment for Sparse Data Journal of Biomolecular NMR. Jul, 2006 | Pubmed ID: 16855861 Site-directed Combinatorial Construction of Chimaeric Genes: General Method for Optimizing Assembly of Gene Fragments Proteins. Aug, 2006 | Pubmed ID: 16783818 Functional Evolution Within a Protein Superfamily Proteins. May, 2006 | Pubmed ID: 16463276 An Efficient Randomized Algorithm for Contact-based NMR Backbone Resonance Assignment Bioinformatics (Oxford, England). Jan, 2006 | Pubmed ID: 16287932 Reconsidering Complete Search Algorithms for Protein Backbone NMR Assignment Bioinformatics (Oxford, England). Sep, 2005 | Pubmed ID: 16204110 A Random Graph Approach to NMR Sequential Assignment Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Jul-Aug, 2005 | Pubmed ID: 16108704 Analysis of Sequence-reactivity Space for Protein-protein Interactions Proteins. Feb, 2005 | Pubmed ID: 15624216 Model-based Assignment and Inference of Protein Backbone Nuclear Magnetic Resonances Statistical Applications in Genetics and Molecular Biology. 2004 | Pubmed ID: 16646822 Probabilistic Cross-link Analysis and Experiment Planning for High-throughput Elucidation of Protein Structure Protein Science : a Publication of the Protein Society. Dec, 2004 | Pubmed ID: 15557270 A Subgroup Algorithm to Identify Cross-rotation Peaks Consistent with Non-crystallographic Symmetry Acta Crystallographica. Section D, Biological Crystallography. Jun, 2004 | Pubmed ID: 15159565 A High Throughput MHC II Binding Assay for Quantitative Analysis of Peptide Epitopes Regina Salvat1, Leonard Moise2, Chris Bailey-Kellogg3, Karl E. Griswold1 1Thayer School of Engineering, Dartmouth College, 2Institute for Immunology and Informatics, University of Rhode Island, 3Department of Computer Science, Dartmouth College JoVE 51308 Biology
A High Throughput MHC II Binding Assay for Quantitative Analysis of Peptide Epitopes Regina Salvat1, Leonard Moise2, Chris Bailey-Kellogg3, Karl E. Griswold1 1Thayer School of Engineering, Dartmouth College, 2Institute for Immunology and Informatics, University of Rhode Island, 3Department of Computer Science, Dartmouth College JoVE 51308 Biology