Chris Bailey-Kellogg Department of Computer Science Dartmouth College Biography Publications Institution JoVE Articles Chris Bailey-Kellogg has not added a biography. If you are Chris Bailey-Kellogg and would like to personalize this page please email our Author Liaison for assistance. Publications Polyfunctional Fc-Effector Profiles Mediated by IgG Subclass Selection Distinguish RV144 and VAX003 Vaccines Science Translational Medicine. Mar, 2014 | Pubmed ID: 24648341 Gene and Protein Sequence Optimization for High Level Production of Fully Active and Aglycosylated Lysostaphin in Pichia Pastoris Applied and Environmental Microbiology. Feb, 2014 | Pubmed ID: 24561590 Divergent Antibody Subclass and Specificity Profiles but Not Protective HLA-B Alleles Are Associated with Variable Antibody Effector Function Among HIV-1 Controllers Journal of Virology. Mar, 2014 | Pubmed ID: 24352471 Improved Multiple Sequence Alignments Using Coupled Pattern Mining IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM. Sep-Oct, 2013 | Pubmed ID: 24384701 Improved Multiple Sequence Alignments Using Coupled Pattern Mining IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM. May, 2013 | Pubmed ID: 23648590 Bayesian Reconstruction of P(r) Directly from Two-dimensional Detector Images Via a Markov Chain Monte Carlo Method Journal of Applied Crystallography. Apr, 2013 | Pubmed ID: 23596342 The Two-faced T Cell Epitope: Examining the Host-microbe Interface with JanusMatrix Human Vaccines & Immunotherapeutics. Jul, 2013 | Pubmed ID: 23584251 Natural Variation in Fc Glycosylation of HIV-specific Antibodies Impacts Antiviral Activity The Journal of Clinical Investigation. May, 2013 | Pubmed ID: 23563315 Structure-guided Deimmunization of Therapeutic Proteins Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Feb, 2013 | Pubmed ID: 23384000 Ballast: a Ball-based Algorithm for Structural Motifs Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Feb, 2013 | Pubmed ID: 23383999 Structure-based Redesign of Proteins for Minimal T-cell Epitope Content Journal of Computational Chemistry. Apr, 2013 | Pubmed ID: 23299435 High-throughput, Multiplexed IgG Subclassing of Antigen-specific Antibodies from Clinical Samples Journal of Immunological Methods. Dec, 2012 | Pubmed ID: 23023091 Design and Analysis of Immune-evading Enzymes for ADEPT Therapy Protein Engineering, Design & Selection : PEDS. Oct, 2012 | Pubmed ID: 22898588 Rapid Determination of Multiple Linear Kinase Substrate Motifs by Mass Spectrometry Chemistry & Biology. May, 2012 | Pubmed ID: 22633412 Algorithms for Optimizing Cross-overs in DNA Shuffling BMC Bioinformatics. 2012 | Pubmed ID: 22536901 MMFPh: a Maximal Motif Finder for Phosphoproteomics Datasets Bioinformatics (Oxford, England). Jun, 2012 | Pubmed ID: 22531218 A Divide-and-conquer Approach to Determine the Pareto Frontier for Optimization of Protein Engineering Experiments Proteins. Mar, 2012 | Pubmed ID: 22180081 Planning Combinatorial Disulfide Cross-links for Protein Fold Determination BMC Bioinformatics. 2011 | Pubmed ID: 22168447 A Geometric Arrangement Algorithm for Structure Determination of Symmetric Protein Homo-oligomers from NOEs and RDCs Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Nov, 2011 | Pubmed ID: 22035328 Optimization of Combinatorial Mutagenesis Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Nov, 2011 | Pubmed ID: 21923411 NMR Structural Inference of Symmetric Homo-oligomers Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Dec, 2011 | Pubmed ID: 21718128 Optimization of Therapeutic Proteins to Delete T-cell Epitopes While Maintaining Beneficial Residue Interactions Journal of Bioinformatics and Computational Biology. Apr, 2011 | Pubmed ID: 21523929 A Graphical Method for Analyzing Distance Restraints Using Residual Dipolar Couplings for Structure Determination of Symmetric Protein Homo-oligomers Protein Science : a Publication of the Protein Society. Jun, 2011 | Pubmed ID: 21413097 Accounting for Conformational Entropy in Predicting Binding Free Energies of Protein-protein Interactions Proteins. Feb, 2011 | Pubmed ID: 21120864 Characterizing the Space of Interatomic Distance Distribution Functions Consistent with Solution Scattering Data Journal of Bioinformatics and Computational Biology. Apr, 2010 | Pubmed ID: 20401948 Optimization Algorithms for Functional Deimmunization of Therapeutic Proteins BMC Bioinformatics. 2010 | Pubmed ID: 20380721 Protein Fragment Swapping: a Method for Asymmetric, Selective Site-directed Recombination Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Mar, 2010 | Pubmed ID: 20377457 Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Aug, 2009 | Pubmed ID: 19645597 Protein Design by Sampling an Undirected Graphical Model of Residue Constraints IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM. Jul-Sep, 2009 | Pubmed ID: 19644177 Graphical Models of Protein-protein Interaction Specificity from Correlated Mutations and Interaction Data Proteins. Sep, 2009 | Pubmed ID: 19306342 Optimizing Bayes Error for Protein Structure Model Selection by Stability Mutagenesis Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 2008 | Pubmed ID: 19642272 Contact Replacement for NMR Resonance Assignment Bioinformatics (Oxford, England). Jul, 2008 | Pubmed ID: 18586716 Graphical Models of Residue Coupling in Protein Families IEEE/ACM Transactions on Computational Biology and Bioinformatics / IEEE, ACM. Apr-Jun, 2008 | Pubmed ID: 18451428 Analysis of Self-associating Proteins by Singular Value Decomposition of Solution Scattering Data Biophysical Journal. Jun, 2008 | Pubmed ID: 18212017 Robotic Hierarchical Mixing for the Production of Combinatorial Libraries of Proteins and Small Molecules Journal of Combinatorial Chemistry. Jan-Feb, 2008 | Pubmed ID: 18072752 Algorithms for Selecting Breakpoint Locations to Optimize Diversity in Protein Engineering by Site-directed Protein Recombination Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 2007 | Pubmed ID: 17951810 Hypergraph Model of Multi-residue Interactions in Proteins: Sequentially-constrained Partitioning Algorithms for Optimization of Site-directed Protein Recombination Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Jul-Aug, 2007 | Pubmed ID: 17691894 A Complete Algorithm to Resolve Ambiguity for Intersubunit NOE Assignment in Structure Determination of Symmetric Homo-oligomers Protein Science : a Publication of the Protein Society. Jan, 2007 | Pubmed ID: 17192589 Structure Determination of Symmetric Homo-oligomers by a Complete Search of Symmetry Configuration Space, Using NMR Restraints and Van Der Waals Packing Proteins. Oct, 2006 | Pubmed ID: 16897780 Inferential Backbone Assignment for Sparse Data Journal of Biomolecular NMR. Jul, 2006 | Pubmed ID: 16855861 Site-directed Combinatorial Construction of Chimaeric Genes: General Method for Optimizing Assembly of Gene Fragments Proteins. Aug, 2006 | Pubmed ID: 16783818 Functional Evolution Within a Protein Superfamily Proteins. May, 2006 | Pubmed ID: 16463276 An Efficient Randomized Algorithm for Contact-based NMR Backbone Resonance Assignment Bioinformatics (Oxford, England). Jan, 2006 | Pubmed ID: 16287932 Reconsidering Complete Search Algorithms for Protein Backbone NMR Assignment Bioinformatics (Oxford, England). Sep, 2005 | Pubmed ID: 16204110 A Random Graph Approach to NMR Sequential Assignment Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Jul-Aug, 2005 | Pubmed ID: 16108704 Analysis of Sequence-reactivity Space for Protein-protein Interactions Proteins. Feb, 2005 | Pubmed ID: 15624216 Model-based Assignment and Inference of Protein Backbone Nuclear Magnetic Resonances Statistical Applications in Genetics and Molecular Biology. 2004 | Pubmed ID: 16646822 Probabilistic Cross-link Analysis and Experiment Planning for High-throughput Elucidation of Protein Structure Protein Science : a Publication of the Protein Society. Dec, 2004 | Pubmed ID: 15557270 A Subgroup Algorithm to Identify Cross-rotation Peaks Consistent with Non-crystallographic Symmetry Acta Crystallographica. Section D, Biological Crystallography. Jun, 2004 | Pubmed ID: 15159565 En hög genomströmning MHC II-bindningsanalys för kvantitativ analys av peptidepitoper Regina Salvat1, Leonard Moise2, Chris Bailey-Kellogg3, Karl E. Griswold1 1Thayer School of Engineering, Dartmouth College, 2Institute for Immunology and Informatics, University of Rhode Island, 3Department of Computer Science, Dartmouth College JoVE 51308 Biology
En hög genomströmning MHC II-bindningsanalys för kvantitativ analys av peptidepitoper Regina Salvat1, Leonard Moise2, Chris Bailey-Kellogg3, Karl E. Griswold1 1Thayer School of Engineering, Dartmouth College, 2Institute for Immunology and Informatics, University of Rhode Island, 3Department of Computer Science, Dartmouth College JoVE 51308 Biology