Christian Landry

Publications

• Gene Duplication Can Impart Fragility, Not Robustness, in the Yeast Protein Interaction Network
  Science (New York, N.Y.). Feb, 2017  |   Pubmed ID: 28183979
• Major Host Transitions Are Modulated Through Transcriptome-wide Reprogramming Events in Schistocephalus Solidus, a Threespine Stickleback Parasite
  Molecular Ecology. Feb, 2017  |   Pubmed ID: 27997044
• Population Genomics Reveals Structure at the Individual, Host-tree Scale and Persistence of Genotypic Variants of the Undomesticated Yeast Saccharomyces Paradoxus in a Natural Woodland
  Molecular Ecology. Feb, 2017  |   Pubmed ID: 27988980
• When Nuclear-encoded Proteins and Mitochondrial RNAs Do Not Get Along, Species Split Apart
  EMBO Reports. Jan, 2017  |   Pubmed ID: 27986790
• Identification of the Fitness Determinants of Budding Yeast on a Natural Substrate
  The ISME Journal. Apr, 2017  |   Pubmed ID: 27935595
• Mitotic Phosphotyrosine Network Analysis Reveals That Tyrosine Phosphorylation Regulates Polo-like Kinase 1 (PLK1)
  Science Signaling. Dec, 2016  |   Pubmed ID: 27965426
• The TRP Channels Pkd2, NompC, and Trpm Act in Cold-Sensing Neurons to Mediate Unique Aversive Behaviors to Noxious Cold in Drosophila
  Current Biology : CB. Dec, 2016  |   Pubmed ID: 27818173
• Protein-Fragment Complementation Assays for Large-Scale Analysis, Functional Dissection, and Spatiotemporal Dynamic Studies of Protein-Protein Interactions in Living Cells
  Cold Spring Harbor Protocols. Nov, 2016  |   Pubmed ID: 27803260
• Combining the Dihydrofolate Reductase Protein-Fragment Complementation Assay with Gene Deletions to Establish Genotype-to-Phenotype Maps of Protein Complexes and Interaction Networks
  Cold Spring Harbor Protocols. Nov, 2016  |   Pubmed ID: 27803253
• The Dihydrofolate Reductase Protein-Fragment Complementation Assay: A Survival-Selection Assay for Large-Scale Analysis of Protein-Protein Interactions
  Cold Spring Harbor Protocols. Nov, 2016  |   Pubmed ID: 27803252
• Molecular and Cellular Bases of Adaptation to a Changing Environment in Microorganisms
  Proceedings. Biological Sciences. Oct, 2016  |   Pubmed ID: 27798299
• Speciation Driven by Hybridization and Chromosomal Plasticity in a Wild Yeast
  Nature Microbiology. Jan, 2016  |   Pubmed ID: 27571751
• Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces Eubayanus
  PLoS Genetics. 07, 2016  |   Pubmed ID: 27385107
• Transcriptome Sequences Spanning Key Developmental States As a Resource for the Study of the Cestode Schistocephalus Solidus, a Threespine Stickleback Parasite
  GigaScience. Jun, 2016  |   Pubmed ID: 27259971
• [Wine Yeast As a Model for the Study of Human Genes and Diseases and Their Personalized Effects]
  Medecine Sciences : M/S. Apr, 2016  |   Pubmed ID: 27137687
• Dissection of Expression-quantitative Trait Locus and Allele Specificity Using a Haploid/diploid Plant System - Insights into Compensatory Evolution of Transcriptional Regulation Within Populations
  The New Phytologist. Jul, 2016  |   Pubmed ID: 26891783
• Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces Cerevisiae
  Genome Biology and Evolution. Jan, 2016  |   Pubmed ID: 26782936
• Multi-scale Perturbations of Protein Interactomes Reveal Their Mechanisms of Regulation, Robustness and Insights into Genotype-phenotype Maps
  Briefings in Functional Genomics. Mar, 2016  |   Pubmed ID: 26476431
• The Genomics of Wild Yeast Populations Sheds Light on the Domestication of Man's Best (micro) Friend
  Molecular Ecology. Nov, 2015  |   Pubmed ID: 26509691
• Evolutionary Rescue by Compensatory Mutations is Constrained by Genomic and Environmental Backgrounds
  Molecular Systems Biology. Oct, 2015  |   Pubmed ID: 26459777
• RNAseq Analysis Highlights Specific Transcriptome Signatures of Yeast and Mycelial Growth Phases in the Dutch Elm Disease Fungus Ophiostoma Novo-ulmi
  G3 (Bethesda, Md.). Sep, 2015  |   Pubmed ID: 26384770
• Lachancea Quebecensis Sp. Nov., a Yeast Species Consistently Isolated from Tree Bark in the Canadian Province of Québec
  International Journal of Systematic and Evolutionary Microbiology. Oct, 2015  |   Pubmed ID: 26297665
• Feedback Regulation Between Autophagy and PKA
  Autophagy. 2015  |   Pubmed ID: 26046386
• Identification of Candidate Mimicry Proteins Involved in Parasite-driven Phenotypic Changes
  Parasites & Vectors. Apr, 2015  |   Pubmed ID: 25888917
• Systematic Identification of Signal Integration by Protein Kinase A
  Proceedings of the National Academy of Sciences of the United States of America. Apr, 2015  |   Pubmed ID: 25831502
• Found in Translation: Functions and Evolution of a Recently Discovered Alternative Proteome
  Current Opinion in Structural Biology. Jun, 2015  |   Pubmed ID: 25795211
• Metabolic Variation in Natural Populations of Wild Yeast
  Ecology and Evolution. Feb, 2015  |   Pubmed ID: 25691993
• The Last Enzyme of the De Novo Purine Synthesis Pathway ATIC Plays a Central Role in Insulin Signalling and the Golgi/endosomes Protein Network
  Molecular & Cellular Proteomics : MCP. Feb, 2015  |   Pubmed ID: 25687571
• The Yeast Galactose Network As a Quantitative Model for Cellular Memory
  Molecular BioSystems. Jan, 2015  |   Pubmed ID: 25328105
• Detecting Functional Divergence After Gene Duplication Through Evolutionary Changes in Posttranslational Regulatory Sequences
  PLoS Computational Biology. Dec, 2014  |   Pubmed ID: 25474245
• Turnover of Protein Phosphorylation Evolving Under Stabilizing Selection
  Frontiers in Genetics. 2014  |   Pubmed ID: 25101120
• Chromosomal Variation Segregates Within Incipient Species and Correlates with Reproductive Isolation
  Molecular Ecology. Sep, 2014  |   Pubmed ID: 25039979
• The Calcineurin Signaling Network Evolves Via Conserved Kinase-phosphatase Modules That Transcend Substrate Identity
  Molecular Cell. Aug, 2014  |   Pubmed ID: 24930733
• Functional Divergence and Evolutionary Turnover in Mammalian Phosphoproteomes
  PLoS Genetics. Jan, 2014  |   Pubmed ID: 24465218
• Local Climatic Adaptation in a Widespread Microorganism
  Proceedings. Biological Sciences / The Royal Society. Feb, 2014  |   Pubmed ID: 24403328
• Molecular Mechanisms of Paralogous Compensation and the Robustness of Cellular Networks
  Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. Nov, 2014  |   Pubmed ID: 24376223
• Recent Advances in Ecological Genomics: from Phenotypic Plasticity to Convergent and Adaptive Evolution and Speciation
  Advances in Experimental Medicine and Biology. 2014  |   Pubmed ID: 24277292
• Modulation of the Yeast Protein Interactome in Response to DNA Damage
  Journal of Proteomics. Apr, 2014  |   Pubmed ID: 24262151
• Exploring the Northern Limit of the Distribution of Saccharomyces Cerevisiae and Saccharomyces Paradoxus in North America
  FEMS Yeast Research. Mar, 2014  |   Pubmed ID: 24119009
• Extracting Insight from Noisy Cellular Networks
  Cell. Nov, 2013  |   Pubmed ID: 24267884
• A Systematic Approach for the Genetic Dissection of Protein Complexes in Living Cells
  Cell Reports. Jun, 2013  |   Pubmed ID: 23746448
• Integrative Avenues for Exploring the Dynamics and Evolution of Protein Interaction Networks
  Current Opinion in Biotechnology. Aug, 2013  |   Pubmed ID: 23571097
• Are Long-lived Trees Poised for Evolutionary Change? Single Locus Effects in the Evolution of Gene Expression Networks in Spruce
  Molecular Ecology. May, 2013  |   Pubmed ID: 23294325
• QPCA: a Scalable Assay to Measure the Perturbation of Protein-protein Interactions in Living Cells
  Molecular BioSystems. Jan, 2013  |   Pubmed ID: 23099892
• Transcriptional Divergence Plays a Role in the Rewiring of Protein Interaction Networks After Gene Duplication
  Journal of Proteomics. Apr, 2013  |   Pubmed ID: 23063722
• Evidence for the Robustness of Protein Complexes to Inter-species Hybridization
  PLoS Genetics. 2012  |   Pubmed ID: 23300466
• Proteomic Characterization of Phagosomal Membrane Microdomains During Phagolysosome Biogenesis and Evolution
  Molecular & Cellular Proteomics : MCP. Nov, 2012  |   Pubmed ID: 22915823
• What is Needed for Next-generation Ecological and Evolutionary Genomics?
  Trends in Ecology & Evolution. Dec, 2012  |   Pubmed ID: 22902072
• Protein Abundance is Key to Distinguish Promiscuous from Functional Phosphorylation Based on Evolutionary Information
  Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. Sep, 2012  |   Pubmed ID: 22889910
• The Genotype-phenotype Maps of Systems Biology and Quantitative Genetics: Distinct and Complementary
  Advances in Experimental Medicine and Biology. 2012  |   Pubmed ID: 22821467
• Where Do Phosphosites Come from and Where Do They Go After Gene Duplication?
  International Journal of Evolutionary Biology. 2012  |   Pubmed ID: 22779031
• Compositional Differences Between Size Classes of Dissolved Organic Matter from Freshwater and Seawater Revealed by an HPLC-FTIR System
  Environmental Science & Technology. Feb, 2012  |   Pubmed ID: 22216934
• Characterization of Spindle Checkpoint Kinase Mps1 Reveals Domain with Functional and Structural Similarities to Tetratricopeptide Repeat Motifs of Bub1 and BubR1 Checkpoint Kinases
  The Journal of Biological Chemistry. Feb, 2012  |   Pubmed ID: 22187426
• Protein-fragment Complementation Assays for Large-scale Analysis, Functional Dissection and Dynamic Studies of Protein-protein Interactions in Living Cells
  Methods in Molecular Biology (Clifton, N.J.). 2011  |   Pubmed ID: 21870242
• Cell Biology. A Cellular Roadmap for the Plant Kingdom
  Science (New York, N.Y.). Jul, 2011  |   Pubmed ID: 21798921
• Phosphorylation Network Rewiring by Gene Duplication
  Molecular Systems Biology. 2011  |   Pubmed ID: 21734643
• Chromatin Regulators Shape the Genotype-phenotype Map
  Molecular Systems Biology. Nov, 2010  |   Pubmed ID: 21119628
• Gene Network Architecture As a Canvas for the Interpretation of Ecological Genomics Investigations
  Molecular Ecology. Dec, 2010  |   Pubmed ID: 21091660
• Molecular Characterization of the Evolution of Phagosomes
  Molecular Systems Biology. Oct, 2010  |   Pubmed ID: 20959821
• A Toolkit of Protein-fragment Complementation Assays for Studying and Dissecting Large-scale and Dynamic Protein-protein Interactions in Living Cells
  Methods in Enzymology. 2010  |   Pubmed ID: 20946817
• Moving from Transcriptional to Phospho-evolution: Generalizing Regulatory Evolution?
  Trends in Genetics : TIG. Nov, 2010  |   Pubmed ID: 20817339
• Cell Signaling. Signaling Through Cooperation
  Science (New York, N.Y.). May, 2010  |   Pubmed ID: 20489011
• Key Considerations for Measuring Allelic Expression on a Genomic Scale Using High-throughput Sequencing
  Molecular Ecology. Mar, 2010  |   Pubmed ID: 20331781
• Cytokine Signaling Mediates UV-induced Nociceptive Sensitization in Drosophila Larvae
  Current Biology : CB. May, 2009  |   Pubmed ID: 19375319
• Weak Functional Constraints on Phosphoproteomes
  Trends in Genetics : TIG. May, 2009  |   Pubmed ID: 19349092
• How Perfect Can Protein Interactomes Be?
  Science Signaling. 2009  |   Pubmed ID: 19261595
• Systems Biology Spins off a New Model for the Study of Canalization
  Trends in Ecology & Evolution. Feb, 2009  |   Pubmed ID: 19100652
• Chromatin- and Transcription-related Factors Repress Transcription from Within Coding Regions Throughout the Saccharomyces Cerevisiae Genome
  PLoS Biology. Nov, 2008  |   Pubmed ID: 18998772
• A Genome-wide View of the Spectrum of Spontaneous Mutations in Yeast
  Proceedings of the National Academy of Sciences of the United States of America. Jul, 2008  |   Pubmed ID: 18583475
• An in Vivo Map of the Yeast Protein Interactome
  Science (New York, N.Y.). Jun, 2008  |   Pubmed ID: 18467557
• Cascading Transcriptional Effects of a Naturally Occurring Frameshift Mutation in Saccharomyces Cerevisiae
  Molecular Ecology. Jun, 2008  |   Pubmed ID: 18422925
• Ecological Annotation of Genes and Genomes Through Ecological Genomics
  Molecular Ecology. Nov, 2007  |   Pubmed ID: 17883391
• Indel Arrays: an Affordable Alternative for Genotyping
  The Plant Journal : for Cell and Molecular Biology. Aug, 2007  |   Pubmed ID: 17645438
• Genetic Properties Influencing the Evolvability of Gene Expression
  Science (New York, N.Y.). Jul, 2007  |   Pubmed ID: 17525304
• Systems-level Analysis and Evolution of the Phototransduction Network in Drosophila
  Proceedings of the National Academy of Sciences of the United States of America. Feb, 2007  |   Pubmed ID: 17360639
• Ecological and Evolutionary Genomics of Saccharomyces Cerevisiae
  Molecular Ecology. Mar, 2006  |   Pubmed ID: 16499686
• Genome-wide Scan Reveals That Genetic Variation for Transcriptional Plasticity in Yeast is Biased Towards Multi-copy and Dispensable Genes
  Gene. Feb, 2006  |   Pubmed ID: 16427747
• Large-scale Genetic Variation of the Symbiosis-required Megaplasmid PSymA Revealed by Comparative Genomic Analysis of Sinorhizobium Meliloti Natural Strains
  BMC Genomics. 2005  |   Pubmed ID: 16283928
• Compensatory Cis-trans Evolution and the Dysregulation of Gene Expression in Interspecific Hybrids of Drosophila
  Genetics. Dec, 2005  |   Pubmed ID: 16143608
• Alternative Life Histories Shape Brain Gene Expression Profiles in Males of the Same Population
  Proceedings. Biological Sciences / The Royal Society. Aug, 2005  |   Pubmed ID: 16087419