Daniel F. Voytas

Publications

• DNA Replicons for Plant Genome Engineering
  The Plant Cell. Jan, 2014  |   Pubmed ID: 24443519
• Tailor-made Mutations in Arabidopsis Using Zinc Finger Nucleases
  Methods in Molecular Biology (Clifton, N.J.). 2014  |   Pubmed ID: 24057367
• TAL Effector Specificity for Base 0 of the DNA Target is Altered in a Complex, Effector- and Assay-dependent Manner by Substitutions for the Tryptophan in Cryptic Repeat -1
  PloS One. 2013  |   Pubmed ID: 24312634
• TALEN-engineered AR Gene Rearrangements Reveal Endocrine Uncoupling of Androgen Receptor in Prostate Cancer
  Proceedings of the National Academy of Sciences of the United States of America. Oct, 2013  |   Pubmed ID: 24101480
• Targeted Mutagenesis for Functional Analysis of Gene Duplication in Legumes
  Methods in Molecular Biology (Clifton, N.J.). 2013  |   Pubmed ID: 23996306
• Targeted Mutagenesis of Arabidopsis Thaliana Using Engineered TAL Effector Nucleases
  G3 (Bethesda, Md.). Oct, 2013  |   Pubmed ID: 23979944
• Targeted Deletion and Inversion of Tandemly Arrayed Genes in Arabidopsis Thaliana Using Zinc Finger Nucleases
  G3 (Bethesda, Md.). Oct, 2013  |   Pubmed ID: 23979943
• Comparing Zinc Finger Nucleases and Transcription Activator-like Effector Nucleases for Gene Targeting in Drosophila
  G3 (Bethesda, Md.). Oct, 2013  |   Pubmed ID: 23979928
• TAL Effectors: Highly Adaptable Phytobacterial Virulence Factors and Readily Engineered DNA-targeting Proteins
  Trends in Cell Biology. Aug, 2013  |   Pubmed ID: 23707478
• TAL Effector Nucleases Induce Mutations at a Pre-selected Location in the Genome of Primary Barley Transformants
  Plant Molecular Biology. Oct, 2013  |   Pubmed ID: 23689819
• TALEN-mediated Editing of the Mouse Y Chromosome
  Nature Biotechnology. May, 2013  |   Pubmed ID: 23666012
• Compact Designer TALENs for Efficient Genome Engineering
  Nature Communications. 2013  |   Pubmed ID: 23612303
• TALEN-based Gene Correction for Epidermolysis Bullosa
  Molecular Therapy : the Journal of the American Society of Gene Therapy. Jun, 2013  |   Pubmed ID: 23546300
• Plant Genome Engineering with Sequence-specific Nucleases
  Annual Review of Plant Biology. 2013  |   Pubmed ID: 23451779
• Reviewer Acknowledgement 2013
  Mobile DNA. 2013  |   Pubmed ID: 23406649
• Rapid and Efficient Gene Modification in Rice and Brachypodium Using TALENs
  Molecular Plant. Jul, 2013  |   Pubmed ID: 23288864
• Increasing Frequencies of Site-specific Mutagenesis and Gene Targeting in Arabidopsis by Manipulating DNA Repair Pathways
  Genome Research. Mar, 2013  |   Pubmed ID: 23282329
• Zinc Finger Database (ZiFDB) V2.0: a Comprehensive Database of C₂H₂ Zinc Fingers and Engineered Zinc Finger Arrays
  Nucleic Acids Research. Jan, 2013  |   Pubmed ID: 23203887
• Transcription Activator-like Effector Nucleases Enable Efficient Plant Genome Engineering
  Plant Physiology. Jan, 2013  |   Pubmed ID: 23124327
• Targeting G with TAL Effectors: a Comparison of Activities of TALENs Constructed with NN and NK Repeat Variable Di-residues
  PloS One. 2012  |   Pubmed ID: 23028976
• Efficient TALEN-mediated Gene Knockout in Livestock
  Proceedings of the National Academy of Sciences of the United States of America. Oct, 2012  |   Pubmed ID: 23027955
• In Vivo Genome Editing Using a High-efficiency TALEN System
  Nature. Nov, 2012  |   Pubmed ID: 23000899
• Simple Methods for Generating and Detecting Locus-specific Mutations Induced with TALENs in the Zebrafish Genome
  PLoS Genetics. 2012  |   Pubmed ID: 22916025
• TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: Tools for TAL Effector Design and Target Prediction
  Nucleic Acids Research. Jul, 2012  |   Pubmed ID: 22693217
• A Nucleosomal Surface Defines an Integration Hotspot for the Saccharomyces Cerevisiae Ty1 Retrotransposon
  Genome Research. Apr, 2012  |   Pubmed ID: 22219511
• TAL Effectors: Customizable Proteins for DNA Targeting
  Science (New York, N.Y.). Sep, 2011  |   Pubmed ID: 21960622
• A TALE of Two Nucleases: Gene Targeting for the Masses?
  Zebrafish. Sep, 2011  |   Pubmed ID: 21929364
• Access to DNA Establishes a Secondary Target Site Bias for the Yeast Retrotransposon Ty5
  Proceedings of the National Academy of Sciences of the United States of America. Dec, 2011  |   Pubmed ID: 21788500
• Efficient Design and Assembly of Custom TALEN and Other TAL Effector-based Constructs for DNA Targeting
  Nucleic Acids Research. Jul, 2011  |   Pubmed ID: 21493687
• Targeted Mutagenesis of Duplicated Genes in Soybean with Zinc-finger Nucleases
  Plant Physiology. Jun, 2011  |   Pubmed ID: 21464476
• ZFNGenome: a Comprehensive Resource for Locating Zinc Finger Nuclease Target Sites in Model Organisms
  BMC Genomics. 2011  |   Pubmed ID: 21276248
• Targeted Mutagenesis in Arabidopsis Using Zinc-finger Nucleases
  Methods in Molecular Biology (Clifton, N.J.). 2011  |   Pubmed ID: 21181530
• Selection-free Zinc-finger-nuclease Engineering by Context-dependent Assembly (CoDA)
  Nature Methods. Jan, 2011  |   Pubmed ID: 21151135
• Predicting Success of Oligomerized Pool Engineering (OPEN) for Zinc Finger Target Site Sequences
  BMC Bioinformatics. 2010  |   Pubmed ID: 21044337
• Meeting Report for Mobile DNA 2010
  Mobile DNA. 2010  |   Pubmed ID: 20735816
• A Transient Assay for Monitoring Zinc Finger Nuclease Activity at Endogenous Plant Gene Targets
  Methods in Molecular Biology (Clifton, N.J.). 2010  |   Pubmed ID: 20680843
• Retrotransposon Vectors for Gene Delivery in Plants
  Mobile DNA. 2010  |   Pubmed ID: 20678194
• Targeting DNA Double-strand Breaks with TAL Effector Nucleases
  Genetics. Oct, 2010  |   Pubmed ID: 20660643
• High Frequency Targeted Mutagenesis in Arabidopsis Thaliana Using Zinc Finger Nucleases
  Proceedings of the National Academy of Sciences of the United States of America. Jun, 2010  |   Pubmed ID: 20508152
• ZiFiT (Zinc Finger Targeter): an Updated Zinc Finger Engineering Tool
  Nucleic Acids Research. Jul, 2010  |   Pubmed ID: 20435679
• Welcome to Mobile DNA
  Mobile DNA. 2010  |   Pubmed ID: 20226071
• Plant Science. DNA Binding Made Easy
  Science (New York, N.Y.). Dec, 2009  |   Pubmed ID: 20007890
• Oligomerized Pool Engineering (OPEN): an 'open-source' Protocol for Making Customized Zinc-finger Arrays
  Nature Protocols. 2009  |   Pubmed ID: 19798082
• High-frequency Modification of Plant Genes Using Engineered Zinc-finger Nucleases
  Nature. May, 2009  |   Pubmed ID: 19404258
• An Affinity-based Scoring Scheme for Predicting DNA-binding Activities of Modularly Assembled Zinc-finger Proteins
  Nucleic Acids Research. Feb, 2009  |   Pubmed ID: 19056825
• Zinc Finger Database (ZiFDB): a Repository for Information on C2H2 Zinc Fingers and Engineered Zinc-finger Arrays
  Nucleic Acids Research. Jan, 2009  |   Pubmed ID: 18812396
• Rapid "open-source" Engineering of Customized Zinc-finger Nucleases for Highly Efficient Gene Modification
  Molecular Cell. Jul, 2008  |   Pubmed ID: 18657511
• Unexpected Failure Rates for Modular Assembly of Engineered Zinc Fingers
  Nature Methods. May, 2008  |   Pubmed ID: 18446154
• Targeting Integration of the Saccharomyces Ty5 Retrotransposon
  Methods in Molecular Biology (Clifton, N.J.). 2008  |   Pubmed ID: 18370074
• Chromodomains Direct Integration of Retrotransposons to Heterochromatin
  Genome Research. Mar, 2008  |   Pubmed ID: 18256242
• Genomics: Fighting Fire with Fire
  Nature. Jan, 2008  |   Pubmed ID: 18216844
• Retrotransposon Target Site Selection by Imitation of a Cellular Protein
  Molecular and Cellular Biology. Feb, 2008  |   Pubmed ID: 18086891
• Phosphorylation Regulates Integration of the Yeast Ty5 Retrotransposon into Heterochromatin
  Molecular Cell. Jul, 2007  |   Pubmed ID: 17643377
• Zinc Finger Targeter (ZiFiT): an Engineered Zinc Finger/target Site Design Tool
  Nucleic Acids Research. Jul, 2007  |   Pubmed ID: 17526515
• Standardized Reagents and Protocols for Engineering Zinc Finger Nucleases by Modular Assembly
  Nature Protocols. 2006  |   Pubmed ID: 17406455
• High-frequency Homologous Recombination in Plants Mediated by Zinc-finger Nucleases
  The Plant Journal : for Cell and Molecular Biology. Nov, 2005  |   Pubmed ID: 16262717
• The Sireviruses, a Plant-specific Lineage of the Ty1/copia Retrotransposons, Interact with a Family of Proteins Related to Dynein Light Chain 8
  Plant Physiology. Oct, 2005  |   Pubmed ID: 16183843
• SplitTester: Software to Identify Domains Responsible for Functional Divergence in Protein Family
  BMC Bioinformatics. 2005  |   Pubmed ID: 15929795
• A Eukaryotic Gene Family Related to Retroelement Integrases
  Trends in Genetics : TIG. Mar, 2005  |   Pubmed ID: 15734571
• Genomic Neighborhoods for Arabidopsis Retrotransposons: a Role for Targeted Integration in the Distribution of the Metaviridae
  Genome Biology. 2004  |   Pubmed ID: 15461796
• The Diversity of LTR Retrotransposons
  Genome Biology. 2004  |   Pubmed ID: 15186483
• Translational Recoding Signals Between Gag and Pol in Diverse LTR Retrotransposons
  RNA (New York, N.Y.). Dec, 2003  |   Pubmed ID: 14623998
• CEN Plasmid Segregation is Destabilized by Tethered Determinants of Ty 5 Integration Specificity: a Role for Double-strand Breaks in CEN Antagonism
  Chromosoma. Aug, 2003  |   Pubmed ID: 12883945
• SIRE1, an Endogenous Retrovirus Family from Glycine Max, is Highly Homogeneous and Evolutionarily Young
  Molecular Biology and Evolution. Aug, 2003  |   Pubmed ID: 12777503
• Controlling Integration Specificity of a Yeast Retrotransposon
  Proceedings of the National Academy of Sciences of the United States of America. May, 2003  |   Pubmed ID: 12730380
• The Soybean Retroelement SIRE1 Uses Stop Codon Suppression to Express Its Envelope-like Protein
  EMBO Reports. Mar, 2003  |   Pubmed ID: 12634845
• Genes of the Pseudoviridae (Ty1/copia Retrotransposons)
  Molecular Biology and Evolution. Nov, 2002  |   Pubmed ID: 12411593
• Common Physical Properties of DNA Affecting Target Site Selection of Sleeping Beauty and Other Tc1/mariner Transposable Elements
  Journal of Molecular Biology. Oct, 2002  |   Pubmed ID: 12381300
• Ty5 Gag Mutations Increase Retrotransposition and Suggest a Role for Hydrogen Bonding in the Function of the Nucleocapsid Zinc Finger
  Journal of Virology. Apr, 2002  |   Pubmed ID: 11884548
• Athila4 of Arabidopsis and Calypso of Soybean Define a Lineage of Endogenous Plant Retroviruses
  Genome Research. Jan, 2002  |   Pubmed ID: 11779837