Davey M. Smith

Publications

• Monitoring HIV Testing and Pre-exposure Prophylaxis Information Seeking by Combining Digital and Traditional Data
  BMC Infectious Diseases. Feb, 2021  |   Pubmed ID: 33632140
• RAMIC: Design of a Randomized, Double-blind, Placebo-controlled Trial to Evaluate the Efficacy of Ramipril in Patients with COVID-19
  Contemporary Clinical Trials. 04, 2021  |   Pubmed ID: 33631357
• Effective HIV Molecular Surveillance Requires Identification of Incident Cases of Infection
  Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America. Feb, 2021  |   Pubmed ID: 33588434
• What the HIV Pandemic Experience Can Teach the United States About the COVID-19 Response
  Journal of Acquired Immune Deficiency Syndromes (1999). 01, 2021  |   Pubmed ID: 33027152
• High Prevalence of HIV-1 Drug Resistance and Dynamics of Transmission Among High-Risk Populations in Port-au-Prince, Haiti
  Journal of Acquired Immune Deficiency Syndromes (1999). 12, 2020  |   Pubmed ID: 33136738
• Dynamics and Dispersal of Local HIV Epidemics Within San Diego and Across The San Diego-Tijuana Border
  Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America. Oct, 2020  |   Pubmed ID: 33079188
• Comparative Circulation Dynamics of the Five Main HIV Types in China
  Journal of Virology. 11, 2020  |   Pubmed ID: 32938762
• Cost-effectiveness Analysis of Pre-exposure Prophylaxis for the Prevention of HIV in Men Who Have Sex with Men in South Korea: a Mathematical Modelling Study
  Scientific Reports. 09, 2020  |   Pubmed ID: 32884082
• No Evidence of SARS-CoV-2 Seminal Shedding Despite SARS-CoV-2 Persistence in the Upper Respiratory Tract
  Open Forum Infectious Diseases. Aug, 2020  |   Pubmed ID: 32875005
• Do Sexual Minorities Face Greater Risk for Sexual Harassment, Ever and at School, in Adolescence?: Findings From a 2019 Cross-Sectional Study of U.S. Adults
  Journal of Interpersonal Violence. Jun, 2020  |   Pubmed ID: 32571176
• "My Death Will Not [Be] in Vain": Testimonials from Last Gift Rapid Research Autopsy Study Participants Living with HIV at the End of Life
  AIDS Research and Human Retroviruses. 12, 2020  |   Pubmed ID: 32449625
• Perceptions of Next-of-Kin/Loved Ones About Last Gift Rapid Research Autopsy Study Enrolling People with HIV/AIDS at the End of Life: A Qualitative Interview Study
  AIDS Research and Human Retroviruses. 12, 2020  |   Pubmed ID: 32449624
• HIV Persists Throughout Deep Tissues with Repopulation from Multiple Anatomical Sources
  The Journal of Clinical Investigation. 04, 2020  |   Pubmed ID: 31910162
• Grindr Users Take More Risks, but Are More Open to Human Immunodeficiency Virus (HIV) Pre-exposure Prophylaxis: Could This Dating App Provide a Platform for HIV Prevention Outreach?
  Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America. 10, 2020  |   Pubmed ID: 31677383
• Proliferative Memory SAMHD1low CD4+ T Cells Harbour High Levels of HIV-1 with Compartmentalized Viral Populations
  PLoS Pathogens. 06, 2019  |   Pubmed ID: 31220191
• Primary Incidence of Hepatitis C Virus Infection Among HIV-Infected Men Who Have Sex With Men in San Diego, 2000-2015
  Open Forum Infectious Diseases. Apr, 2019  |   Pubmed ID: 31041355
• Mechanism of Action of Methotrexate Against Zika Virus
  Viruses. 04, 2019  |   Pubmed ID: 30974762
• Challenges in Quantifying Cytosine Methylation in the HIV Provirus
  MBio. 01, 2019  |   Pubmed ID: 30670613
• Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2018 Recommendations of the International Antiviral Society-USA Panel
  JAMA. 07, 2018  |   Pubmed ID: 30043070
• Occult HBV Infection in HIV-infected Adults and Evaluation of Pooled NAT for HBV
  Journal of Viral Hepatitis. 06, 2018  |   Pubmed ID: 29316078
• Temporal Variation in HIV-specific IgG Subclass Antibodies During Acute Infection Differentiates Spontaneous Controllers from Chronic Progressors
  AIDS (London, England). 02, 2018  |   Pubmed ID: 29239894
• HIV, Hepatitis B Virus, and Hepatitis C Virus Prevalence Among High-Risk Populations in South India
  AIDS Research and Human Retroviruses. 04, 2018  |   Pubmed ID: 29161880
• Size, Composition, and Evolution of HIV DNA Populations During Early Antiretroviral Therapy and Intensification with Maraviroc
  Journal of Virology. 02, 2018  |   Pubmed ID: 29142136
• Bacteremia and Skin Infections in Four Patients Caused by -Like Organisms
  Open Forum Infectious Diseases. 2017  |   Pubmed ID: 31338379
• No Substantial Evidence for Sexual Transmission of Minority HIV Drug Resistance Mutations in Men Who Have Sex with Men
  Journal of Virology. 11, 2017  |   Pubmed ID: 28794047
• Intrasubtype B HIV-1 Superinfection Correlates with Delayed Neutralizing Antibody Response
  Journal of Virology. 09, 2017  |   Pubmed ID: 28615205
• Increased HIV-1 Superinfection Risk in Carriers of Specific Human Leukocyte Antigen Alleles
  AIDS (London, England). 05, 2017  |   Pubmed ID: 28244954
• Social and Genetic Networks of HIV-1 Transmission in New York City
  PLoS Pathogens. 01, 2017  |   Pubmed ID: 28068413
• Early Antiretroviral Therapy Is Associated with Lower HIV DNA Molecular Diversity and Lower Inflammation in Cerebrospinal Fluid but Does Not Prevent the Establishment of Compartmentalized HIV DNA Populations
  PLoS Pathogens. 01, 2017  |   Pubmed ID: 28046096
• Partner Services in Adults with Acute and Early HIV Infection
  AIDS (London, England). 01, 2017  |   Pubmed ID: 27831950
• Can Research at the End of Life Be a Useful Tool to Advance HIV Cure?
  AIDS (London, England). 01, 2017  |   Pubmed ID: 27755112
• First Appearance of HIV-1 CRF07_BC and CRF08_BC Outside China
  AIDS Research and Human Retroviruses. 01, 2017  |   Pubmed ID: 27392826
• HIV-associated Neurocognitive Disorder is Associated with HIV-1 Dual Infection
  AIDS (London, England). 11, 2016  |   Pubmed ID: 27536983
• Screening for Acute HIV Infection in Community-based Settings: Cost-effectiveness and Impact on Transmissions
  The Journal of Infection. 11, 2016  |   Pubmed ID: 27521468
• Standard Vaccines Increase HIV-1 Transcription During Antiretroviral Therapy
  AIDS (London, England). 09, 2016  |   Pubmed ID: 27427877
• Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2016 Recommendations of the International Antiviral Society-USA Panel
  JAMA. Jul, 2016  |   Pubmed ID: 27404187
• The Dynamics of the HIV Epidemic Among Men Who Have Sex with Men (MSM) from 2005 to 2012 in Shenzhen, China
  Scientific Reports. 06, 2016  |   Pubmed ID: 27352965
• A Practical Online Tool to Estimate Antiretroviral Coverage for HIV Infected and Susceptible Populations Needed to Reduce Local HIV Epidemics
  Scientific Reports. 06, 2016  |   Pubmed ID: 27337983
• Characteristics of Resting-State Functional Connectivity in HIV-Associated Neurocognitive Disorder
  PloS One. 2016  |   Pubmed ID: 27104345
• Molecular Epidemiology Identifies HIV Transmission Networks Associated with Younger Age and Heterosexual Exposure Among Korean Individuals
  Journal of Medical Virology. 10, 2016  |   Pubmed ID: 26990771
• Signs or Symptoms of Acute HIV Infection in a Cohort Undergoing Community-Based Screening
  Emerging Infectious Diseases. Mar, 2016  |   Pubmed ID: 26890854
• Timing Matters - Influenza Vaccination to HIV-Infected Patients
  HIV Medicine. 09, 2016  |   Pubmed ID: 26810556
• Mitochondrial Injury and Cognitive Function in HIV Infection and Methamphetamine Use
  AIDS (London, England). Mar, 2016  |   Pubmed ID: 26807965
• Clear Links Between Starting Methamphetamine and Increasing Sexual Risk Behavior: A Cohort Study Among Men Who Have Sex With Men
  Journal of Acquired Immune Deficiency Syndromes (1999). Apr, 2016  |   Pubmed ID: 26536321
• Cell-free Mitochondrial DNA in CSF is Associated with Early Viral Rebound, Inflammation, and Severity of Neurocognitive Deficits in HIV Infection
  Journal of Neurovirology. Apr, 2016  |   Pubmed ID: 26428514
• HIV Migration Between Blood Plasma and Cellular Subsets Before and After HIV Therapy
  Journal of Medical Virology. Apr, 2016  |   Pubmed ID: 26348372
• Subtype Associations with HIV-associated Neurocognitive Disorder in China
  Journal of Neurovirology. Apr, 2016  |   Pubmed ID: 26306690
• HIV Transmission Networks in the San Diego-Tijuana Border Region
  EBioMedicine. Oct, 2015  |   Pubmed ID: 26629540
• Circulating HIV DNA Correlates With Neurocognitive Impairment in Older HIV-infected Adults on Suppressive ART
  Scientific Reports. Nov, 2015  |   Pubmed ID: 26603568
• No Evidence of Posttreatment Control After Early Initiation of Antiretroviral Therapy
  AIDS (London, England). Oct, 2015  |   Pubmed ID: 26544575
• What Can We Learn From Measles? No New HIV Infections
  Topics in Antiviral Medicine. Aug-Sep, 2015  |   Pubmed ID: 26518393
• Methamphetamine Use in HIV-infected Individuals Affects T-cell Function and Viral Outcome During Suppressive Antiretroviral Therapy
  Scientific Reports. Aug, 2015  |   Pubmed ID: 26299251
• Seminal Shedding of CMV and HIV Transmission Among Men Who Have Sex with Men
  International Journal of Environmental Research and Public Health. Jul, 2015  |   Pubmed ID: 26198239
• Targeting HIV Prevention Based on Molecular Epidemiology Among Deeply Sampled Subnetworks of Men Who Have Sex With Men
  Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America. Nov, 2015  |   Pubmed ID: 26129754
• Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis
  PLoS Medicine. Apr, 2015  |   Pubmed ID: 25849352
• Short Communication: Increase of HIV-1 K103N Transmitted Drug Resistance and Its Association with Efavirenz Use in South Korea
  AIDS Research and Human Retroviruses. Jun, 2015  |   Pubmed ID: 25826122
• The Sordid Affair Between Human Herpesvirus and HIV
  The Journal of Infectious Diseases. Sep, 2015  |   Pubmed ID: 25748324
• Gene-wide Identification of Episodic Selection
  Molecular Biology and Evolution. May, 2015  |   Pubmed ID: 25701167
• Next Generation Sequencing Improves Detection of Drug Resistance Mutations in Infants After PMTCT Failure
  Journal of Clinical Virology : the Official Publication of the Pan American Society for Clinical Virology. Jan, 2015  |   Pubmed ID: 25542470
• HIV-1 Neutralizing Antibody Response and Viral Genetic Diversity Characterized with Next Generation Sequencing
  Virology. Jan, 2015  |   Pubmed ID: 25463602
• IDEPI: Rapid Prediction of HIV-1 Antibody Epitopes and Other Phenotypic Features from Sequence Data Using a Flexible Machine Learning Platform
  PLoS Computational Biology. Sep, 2014  |   Pubmed ID: 25254639
• Pre-exposure Prophylaxis Accessibility Research and Evaluation (PrEPARE Study)
  AIDS and Behavior. Sep, 2014  |   Pubmed ID: 25017425
• Short Communication: Prospective Comparison of Qualitative Versus Quantitative Polymerase Chain Reaction for Monitoring Virologic Treatment Failure in HIV-infected Patients
  AIDS Research and Human Retroviruses. Aug, 2014  |   Pubmed ID: 24724838
• Mathematical Modeling of HIV Prevention Measures Including Pre-exposure Prophylaxis on HIV Incidence in South Korea
  PloS One. 2014  |   Pubmed ID: 24662776
• HIV-associated Neurocognitive Disorder in HIV-infected Koreans: the Korean NeuroAIDS Project
  HIV Medicine. Sep, 2014  |   Pubmed ID: 24580888
• Predictors of Virologic Response in Persons Who Start Antiretroviral Therapy During Recent HIV Infection
  AIDS (London, England). Mar, 2014  |   Pubmed ID: 24401640
• Incidence and Prevalence of Intrasubtype HIV-1 Dual Infection in At-risk Men in the United States
  The Journal of Infectious Diseases. Apr, 2014  |   Pubmed ID: 24273040
• Pooled Nucleic Acid Testing to Identify Antiretroviral Treatment Failure During HIV Infection in Seoul, South Korea
  Scandinavian Journal of Infectious Diseases. Feb, 2014  |   Pubmed ID: 24228824
• Antibody Response to Achromobacter Xylosoxidans During HIV Infection is Associated with Lower CD4 Levels and Increased Lymphocyte Activation
  Clinical and Vaccine Immunology : CVI. Jan, 2014  |   Pubmed ID: 24173027
• Virologic Correlates of Anti-CMV IgG Levels in HIV-1-infected Men
  The Journal of Infectious Diseases. Feb, 2014  |   Pubmed ID: 23964106
• High Prevalence of Hepatitis Delta Virus Among Patients with Chronic Hepatitis B Virus Infection and HIV-1 in an Intermediate Hepatitis B Virus Endemic Region
  Journal of the International Association of Providers of AIDS Care. Jan-Feb, 2014  |   Pubmed ID: 23722085
• Gut Lactobacillales Are Associated with Higher CD4 and Less Microbial Translocation During HIV Infection
  AIDS (London, England). Jul, 2013  |   Pubmed ID: 24180001
• Dual-mixed HIV-1 Coreceptor Tropism and HIV-associated Neurocognitive Deficits
  Journal of Neurovirology. Oct, 2013  |   Pubmed ID: 24078557
• Simulation of Pooled Nucleic Acid Testing to Identify Antiretroviral Treatment Failure During HIV Infection in Seoul, South Korea
  Journal of Acquired Immune Deficiency Syndromes (1999). Mar, 2013  |   Pubmed ID: 23924640
• HIV-1 Clade B Pol Evolution Following Primary Infection
  PloS One. 2013  |   Pubmed ID: 23840830
• Reply to Mounzer and DiNubile
  The Journal of Infectious Diseases. Aug, 2013  |   Pubmed ID: 23667136
• Using Ultradeep Pyrosequencing to Study HIV-1 Coreceptor Usage in Primary and Dual Infection
  The Journal of Infectious Diseases. Jul, 2013  |   Pubmed ID: 23599311
• Etravirine in CSF is Highly Protein Bound
  The Journal of Antimicrobial Chemotherapy. Jan, 2013  |   Pubmed ID: 23335197
• Enhanced CD4+ T-cell Recovery with Earlier HIV-1 Antiretroviral Therapy
  The New England Journal of Medicine. Jan, 2013  |   Pubmed ID: 23323898
• Cytomegalovirus DNA in Semen and Blood is Associated with Higher Levels of Proviral HIV DNA
  The Journal of Infectious Diseases. Mar, 2013  |   Pubmed ID: 23275608
• Role of Seminal Shedding of Herpesviruses in HIV Type 1 Transmission
  The Journal of Infectious Diseases. Jan, 2013  |   Pubmed ID: 23148284
• Herpes Viruses and HIV-1 Drug Resistance Mutations Influence the Virologic and Immunologic Milieu of the Male Genital Tract
  AIDS (London, England). Jan, 2013  |   Pubmed ID: 22739399
• Sexual Transmission of Predicted CXCR4-tropic HIV-1 Likely Originating from the Source Partner's Seminal Cells
  Virology. Dec, 2012  |   Pubmed ID: 23040890
• Higher HIV-1 Genetic Diversity is Associated with AIDS and Neuropsychological Impairment
  Virology. Nov, 2012  |   Pubmed ID: 22999095
• Impact of Seminal Cytomegalovirus Replication on HIV-1 Dynamics Between Blood and Semen
  Journal of Medical Virology. Nov, 2012  |   Pubmed ID: 22997072
• Correlates of HIV and Malaria Co-infection in Southern India
  Malaria Journal. Sep, 2012  |   Pubmed ID: 22943054
• A Combined Screening Platform for HIV Treatment Failure and Resistance
  PloS One. 2012  |   Pubmed ID: 22563383
• Genetic Features of Cerebrospinal Fluid-derived Subtype B HIV-1 Tat
  Journal of Neurovirology. Apr, 2012  |   Pubmed ID: 22528397
• Reverse Transcriptase Substitution at Codons 208 and 228 Among Treatment-experienced HIV-1 Subtype-C-infected Indian Patients is Strongly Associated with Thymidine Analogue Mutations
  Journal of Acquired Immune Deficiency Syndromes (1999). Feb, 2012  |   Pubmed ID: 22245718
• Clinical, Virologic, and Immunologic Correlates of HIV-1 Intraclade B Dual Infection Among Men Who Have Sex with Men
  AIDS (London, England). Jan, 2012  |   Pubmed ID: 22045341
• The Use of High Performance Liquid Chromatography to Speciate and Characterize the Epidemiology of Mycobacteria
  Laboratory Medicine. Oct, 2011  |   Pubmed ID: 24443588
• The Price of Tenofovir-emtricitabine Undermines the Cost-effectiveness and Advancement of Pre-exposure Prophylaxis
  AIDS (London, England). Nov, 2011  |   Pubmed ID: 22067201
• HIV-1 Reverse Transcriptase Nucleotide Substitutions in Subtype C-infected, Drug-naive, and Treatment-experienced Patients in South India
  Journal of Acquired Immune Deficiency Syndromes (1999). Nov, 2011  |   Pubmed ID: 21876445
• Detection of Minority Resistance During Early HIV-1 Infection: Natural Variation and Spurious Detection Rather Than Transmission and Evolution of Multiple Viral Variants
  Journal of Virology. Aug, 2011  |   Pubmed ID: 21632754
• Evaluation of Pooled Rapid HIV Antibody Screening of Patients Admitted to a San Diego Hospital
  Journal of Virological Methods. Jun, 2011  |   Pubmed ID: 21513744
• The Relatedness of HIV Epidemics in the United States-Mexico Border Region
  AIDS Research and Human Retroviruses. Dec, 2010  |   Pubmed ID: 20977301
• Evaluation of an HIV Nucleic Acid Testing Program with Automated Internet and Voicemail Systems to Deliver Results
  Annals of Internal Medicine. Jun, 2010  |   Pubmed ID: 20547906
• Protease Polymorphisms in HIV-1 Subtype CRF01_AE Represent Selection by Antiretroviral Therapy and Host Immune Pressure
  AIDS (London, England). Jan, 2010  |   Pubmed ID: 20009919
• Gene Expression Before HAART Initiation Predicts HIV-infected Individuals at Risk of Poor CD4+ T-cell Recovery
  AIDS (London, England). Jan, 2010  |   Pubmed ID: 19952713
• Pooled Nucleic Acid Testing to Identify Antiretroviral Treatment Failure During HIV Infection
  Journal of Acquired Immune Deficiency Syndromes (1999). Feb, 2010  |   Pubmed ID: 19770802
• Malaria Diagnosis by a Polymerase Chain Reaction-based Assay Using a Pooling Strategy
  The American Journal of Tropical Medicine and Hygiene. Nov, 2009  |   Pubmed ID: 19861605
• Select Resistance-associated Mutations in Blood Are Associated with Lower CSF Viral Loads and Better Neuropsychological Performance
  Virology. Nov, 2009  |   Pubmed ID: 19762060
• The Use of Pooled Viral Load Testing to Identify Antiretroviral Treatment Failure
  AIDS (London, England). Oct, 2009  |   Pubmed ID: 19730348
• A Novel Codon Insert in Protease of Clade B HIV Type 1
  AIDS Research and Human Retroviruses. May, 2009  |   Pubmed ID: 19397401
• Are All Subtypes Created Equal? The Effectiveness of Antiretroviral Therapy Against Non-subtype B HIV-1
  Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America. May, 2009  |   Pubmed ID: 19331584
• Pleocytosis is Associated with Disruption of HIV Compartmentalization Between Blood and Cerebral Spinal Fluid Viral Populations
  Virology. Mar, 2009  |   Pubmed ID: 19100592
• A Public Health Model for the Molecular Surveillance of HIV Transmission in San Diego, California
  AIDS (London, England). Jan, 2009  |   Pubmed ID: 19098493
• Active Duty Military Personnel Presenting for Care at a Gay Men's Health Clinic
  Journal of Homosexuality. 2008  |   Pubmed ID: 18825864
• Comparison of Algorithms That Interpret Genotypic HIV-1 Drug Resistance to Determine the Prevalence of Transmitted Drug Resistance
  AIDS (London, England). Apr, 2008  |   Pubmed ID: 18427201
• Physicians' Attitudes Toward Homosexuality and HIV: Survey of a California Medical Society- Revisited (PATHH-II)
  Journal of Homosexuality. 2007  |   Pubmed ID: 17594969
• Serosorting Can Potentially Increase HIV Transmissions
  AIDS (London, England). May, 2007  |   Pubmed ID: 17502737
• Characteristics of Recently HIV-infected Men Who Use the Internet to Find Male Sex Partners and Sexual Practices with Those Partners
  Journal of Acquired Immune Deficiency Syndromes (1999). Dec, 2006  |   Pubmed ID: 17019370
• Lack of Neutralizing Antibody Response to HIV-1 Predisposes to Superinfection
  Virology. Nov, 2006  |   Pubmed ID: 16962152
• Genetic Attributes of Cerebrospinal Fluid-derived HIV-1 Env
  Brain : a Journal of Neurology. Jul, 2006  |   Pubmed ID: 16735456
• HIV Drug Resistance Acquired Through Superinfection
  AIDS (London, England). Aug, 2005  |   Pubmed ID: 16052079
• Clade B HIV-1 Superinfection with Wild-type Virus After Primary Infection with Drug-resistant Clade B Virus
  AIDS (London, England). May, 2003  |   Pubmed ID: 12700477
• Fatal Saccharomyces Cerevisiae Aortic Graft Infection
  Journal of Clinical Microbiology. Jul, 2002  |   Pubmed ID: 12089311