David Fenyo Laboratory of Mass Spectrometry and Gaseous Ion Chemistry Rockefeller University Biography Publications Institution JoVE Articles David Fenyo has not added a biography. If you are David Fenyo and would like to personalize this page please email our Author Liaison for assistance. Publications The GPMDB REST Interface Bioinformatics (Oxford, England). Feb, 2015 | Pubmed ID: 25697819 Use of ENCODE Resources to Characterize Novel Proteoforms and Missing Proteins in the Human Proteome Journal of Proteome Research. Feb, 2015 | Pubmed ID: 25369122 Pathway Analysis and Transcriptomics Improve Protein Identification by Shotgun Proteomics from Samples Comprising Small Number of Cells--a Benchmarking Study BMC Genomics. 2014 | Pubmed ID: 25521637 A Robust Pipeline for Rapid Production of Versatile Nanobody Repertoires Nature Methods. Dec, 2014 | Pubmed ID: 25362362 Super-resolution Imaging Reveals That Loss of the C-terminus of Connexin43 Limits Microtubule Plus-end Capture and NaV1.5 Localization at the Intercalated Disc Cardiovascular Research. Nov, 2014 | Pubmed ID: 25139742 Ischemia in Tumors Induces Early and Sustained Phosphorylation Changes in Stress Kinase Pathways but Does Not Affect Global Protein Levels Molecular & Cellular Proteomics : MCP. Jul, 2014 | Pubmed ID: 24719451 Integrated Chromosome 19 Transcriptomic and Proteomic Data Sets Derived from Glioma Cancer Stem-cell Lines Journal of Proteome Research. Jan, 2014 | Pubmed ID: 24266786 Super-resolution Fluorescence Microscopy of the Cardiac Connexome Reveals Plakophilin-2 Inside the Connexin43 Plaque Cardiovascular Research. Nov, 2013 | Pubmed ID: 23929525 Developments in Biobanking Workflow Standardization Providing Sample Integrity and Stability Journal of Proteomics. Dec, 2013 | Pubmed ID: 23856607 Atypical and Classical Memory B Cells Produce Plasmodium Falciparum Neutralizing Antibodies The Journal of Experimental Medicine. Feb, 2013 | Pubmed ID: 23319701 A Chromosome-centric Human Proteome Project (C-HPP) to Characterize the Sets of Proteins Encoded in Chromosome 17 Journal of Proteome Research. Jan, 2013 | Pubmed ID: 23259914 Chromosome 19 Annotations with Disease Speciation: a First Report from the Global Research Consortium Journal of Proteome Research. Jan, 2013 | Pubmed ID: 23249167 Comparative Proteomic Analysis of the ATP-sensitive K+ Channel Complex in Different Tissue Types Proteomics. Jan, 2013 | Pubmed ID: 23197389 Strategy for Identifying Dendritic Cell-processed CD4+ T Cell Epitopes from the HIV Gag P24 Protein PloS One. 2012 | Pubmed ID: 22860026 Sequence and Structural Convergence of Broad and Potent HIV Antibodies That Mimic CD4 Binding Science (New York, N.Y.). Sep, 2011 | Pubmed ID: 21764753 High-Capacity Ion Trap Coupled to a Time-of-Flight Mass Spectrometer for Comprehensive Linked Scans with No Scanning Losses International Journal of Mass Spectrometry. Mar, 2011 | Pubmed ID: 21516228 Modeling Mass Spectrometry-based Protein Analysis Methods in Molecular Biology (Clifton, N.J.). 2011 | Pubmed ID: 21082431 Modeling Experimental Design for Proteomics Methods in Molecular Biology (Clifton, N.J.). 2010 | Pubmed ID: 20835802 Protein Quantitation Using Mass Spectrometry Methods in Molecular Biology (Clifton, N.J.). 2010 | Pubmed ID: 20835801 Mass Spectrometric Protein Identification Using the Global Proteome Machine Methods in Molecular Biology (Clifton, N.J.). 2010 | Pubmed ID: 20835799 The Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and Characterisation of the Carbonate-washed Membrane Standard Proteomics. Nov, 2010 | Pubmed ID: 20486120 GINS Motion Reveals Replication Fork Progression is Remarkably Uniform Throughout the Yeast Genome Molecular Systems Biology. 2010 | Pubmed ID: 20212525 Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance Molecular & Cellular Proteomics : MCP. Feb, 2010 | Pubmed ID: 19858499 Rapid Sensitive Analysis of Cysteine Rich Peptide Venom Components Proceedings of the National Academy of Sciences of the United States of America. Apr, 2009 | Pubmed ID: 19380747 Four Histone Variants Mark the Boundaries of Polycistronic Transcription Units in Trypanosoma Brucei Genes & Development. May, 2009 | Pubmed ID: 19369410 Evaluation of the Variation in Sample Preparation for Comparative Proteomics Using Stable Isotope Labeling by Amino Acids in Cell Culture Journal of Proteome Research. Mar, 2009 | Pubmed ID: 19140678 Screening for EphB Signaling Effectors Using SILAC with a Linear Ion Trap-orbitrap Mass Spectrometer Journal of Proteome Research. Nov, 2008 | Pubmed ID: 18816084 Validation of Endogenous Peptide Identifications Using a Database of Tandem Mass Spectra Journal of Proteome Research. Jul, 2008 | Pubmed ID: 18549260 Efficient Identification of Phosphorylation by Mass Spectrometric Phosphopeptide Fingerprinting Analytical Chemistry. Apr, 2008 | Pubmed ID: 18321079 Rapid Isolation and Identification of Bacteriophage T4-encoded Modifications of Escherichia Coli RNA Polymerase: a Generic Method to Study Bacteriophage/host Interactions Journal of Proteome Research. Mar, 2008 | Pubmed ID: 18271525 Use of DNA Ladders for Reproducible Protein Fractionation by Sodium Dodecyl Sulfate-polyacrylamide Gel Electrophoresis (SDS-PAGE) for Quantitative Proteomics Journal of Proteome Research. Feb, 2008 | Pubmed ID: 18189343 Informatics Development: Challenges and Solutions for MALDI Mass Spectrometry Mass Spectrometry Reviews. Jan-Feb, 2008 | Pubmed ID: 17979143 An Automated Method for Scanning LC-MS Data Sets for Significant Peptides and Proteins, Including Quantitative Profiling and Interactive Confirmation Journal of Proteome Research. Jul, 2007 | Pubmed ID: 17559249 Improving the Success Rate of Proteome Analysis by Modeling Protein-abundance Distributions and Experimental Designs Nature Biotechnology. Jun, 2007 | Pubmed ID: 17557102 Neuropeptidomics Strategies for Specific and Sensitive Identification of Endogenous Peptides Molecular & Cellular Proteomics : MCP. Jul, 2007 | Pubmed ID: 17401030 Determining the Overall Merit of Protein Identification Data Sets: Rho-diagrams and Rho-scores Journal of Proteome Research. May, 2007 | Pubmed ID: 17397212 Detection of Artifacts and Peptide Modifications in Liquid Chromatography/mass Spectrometry Data Using Two-dimensional Signal Intensity Map Data Visualization Rapid Communications in Mass Spectrometry : RCM. 2006 | Pubmed ID: 16628601 Reproducibility of LC-MS-based Protein Identification Journal of Experimental Botany. 2006 | Pubmed ID: 16551682 SwePep, a Database Designed for Endogenous Peptides and Mass Spectrometry Molecular & Cellular Proteomics : MCP. Jun, 2006 | Pubmed ID: 16501280 Optimizing Search Conditions for the Mass Fingerprint-based Identification of Proteins Proteomics. Apr, 2006 | Pubmed ID: 16485258 An Evaluation, Comparison, and Accurate Benchmarking of Several Publicly Available MS/MS Search Algorithms: Sensitivity and Specificity Analysis Proteomics. Aug, 2005 | Pubmed ID: 16047398 Protein Identification in Complex Mixtures Journal of Proteome Research. Mar-Apr, 2005 | Pubmed ID: 15822914 Phosphotyrosine Signaling Networks in Epidermal Growth Factor Receptor Overexpressing Squamous Carcinoma Cells Molecular & Cellular Proteomics : MCP. Apr, 2005 | Pubmed ID: 15657067 Finding Protein Sequences Using PROWL Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [et Al.]. Oct, 2004 | Pubmed ID: 18428719 A Proteomics Approach to the Study of Absorption, Distribution, Metabolism, Excretion, and Toxicity Journal of Biomolecular Techniques : JBT. Dec, 2004 | Pubmed ID: 15585823 The Statistical Significance of Protein Identification Results As a Function of the Number of Protein Sequences Searched Journal of Proteome Research. Sep-Oct, 2004 | Pubmed ID: 15473685 Probity: a Protein Identification Algorithm with Accurate Assignment of the Statistical Significance of the Results Journal of Proteome Research. Jan-Feb, 2004 | Pubmed ID: 14998160 A Method for Assessing the Statistical Significance of Mass Spectrometry-based Protein Identifications Using General Scoring Schemes Analytical Chemistry. Feb, 2003 | Pubmed ID: 12622365 A Modular Cross-linking Approach for Exploring Protein Interactions Journal of the American Chemical Society. Mar, 2003 | Pubmed ID: 12603129 Informatics and Data Management in Proteomics Trends in Biotechnology. Dec, 2002 | Pubmed ID: 12570158 A Model of Random Mass-matching and Its Use for Automated Significance Testing in Mass Spectrometric Proteome Analysis Proteomics. Mar, 2002 | Pubmed ID: 11921442 RADARS, a Bioinformatics Solution That Automates Proteome Mass Spectral Analysis, Optimises Protein Identification, and Archives Data in a Relational Database Proteomics. Jan, 2002 | Pubmed ID: 11788990 MALDI Sample Preparation: the Ultra Thin Layer Method David Fenyo1, Qingjun Wang1, Jeffrey A. DeGrasse1, Julio C. Padovan1, Martine Cadene1, Brian T. Chait1 1Laboratory of Mass Spectrometry and Gaseous Ion Chemistry, Rockefeller University JoVE 192 Biology
MALDI Sample Preparation: the Ultra Thin Layer Method David Fenyo1, Qingjun Wang1, Jeffrey A. DeGrasse1, Julio C. Padovan1, Martine Cadene1, Brian T. Chait1 1Laboratory of Mass Spectrometry and Gaseous Ion Chemistry, Rockefeller University JoVE 192 Biology
