Doil Choi Department of Plant Science, Plant Genomics and Breeding Institute, College of Agriculture and Life Science Seoul National University Biography Publications Institution JoVE Articles Doil Choi has not added a biography. If you are Doil Choi and would like to personalize this page please email our Author Liaison for assistance. Publications Coiled-coil and Leucine-rich Repeat Domain of the Potyvirus Resistance Protein, Pvr4, Has Distinct Role in Signaling and Pathogen Recognition Molecular Plant-microbe Interactions : MPMI. Apr, 2018 | Pubmed ID: 29663867 Genome and Evolution of the Shade-requiring Medicinal Herb Panax Ginseng Plant Biotechnology Journal. Mar, 2018 | Pubmed ID: 29604169 New Role of LTR-retrotransposons for Emergence and Expansion of Disease-resistance Genes and High-copy Gene Families in Plants BMB Reports. Feb, 2018 | Pubmed ID: 29353598 Identification of a Molecular Marker Tightly Linked to Bacterial Wilt Resistance in Tomato by Genome-wide SNP Analysis TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. May, 2018 | Pubmed ID: 29352323 Suppression or Activation of Immune Responses by Predicted Secreted Proteins of the Soybean Rust Pathogen Phakopsora Pachyrhizi Molecular Plant-microbe Interactions : MPMI. Jan, 2018 | Pubmed ID: 29144203 HSP70s Enhance a Phytophthora Infestans Effector-Induced Cell Death Via an MAPK Cascade in Nicotiana Benthamiana Molecular Plant-microbe Interactions : MPMI. Mar, 2018 | Pubmed ID: 29140163 Fine Mapping of the Genic Male-sterile Ms Gene in Capsicum Annuum L TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Jan, 2018 | Pubmed ID: 29032401 Molecular Mapping of , a Novel Locus Conferring Resistance to Powdery Mildew in Pepper () Frontiers in Plant Science. 2017 | Pubmed ID: 29276524 New Reference Genome Sequences of Hot Pepper Reveal the Massive Evolution of Plant Disease-resistance Genes by Retroduplication Genome Biology. Nov, 2017 | Pubmed ID: 29089032 Nicotiana Benthamiana Matrix Metalloprotease 1 (NMMP1) Gene Confers Disease Resistance to Phytophthora Infestans in Tobacco and Potato Plants Journal of Plant Physiology. Nov, 2017 | Pubmed ID: 28888160 Expansion of Sesquiterpene Biosynthetic Gene Clusters in Pepper Confers Nonhost Resistance to the Irish Potato Famine Pathogen The New Phytologist. Aug, 2017 | Pubmed ID: 28631815 Spatiotemporal Monitoring of Effectors Via Type III Secretion Using Split Fluorescent Protein Fragments The Plant Cell. Jul, 2017 | Pubmed ID: 28619883 Harnessing Anthocyanin-rich Fruit: a Visible Reporter for Tracing Virus-induced Gene Silencing in Pepper Fruit Plant Methods. 2017 | Pubmed ID: 28053648 Genome Analysis of Hibiscus Syriacus Provides Insights of Polyploidization and Indeterminate Flowering in Woody Plants DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes. Feb, 2017 | Pubmed ID: 28011721 Current Understandings of Plant Nonhost Resistance Molecular Plant-microbe Interactions : MPMI. 01, 2017 | Pubmed ID: 27925500 Divergent Evolution of Multiple Virus-resistance Genes from a Progenitor in Capsicum Spp The New Phytologist. Jan, 2017 | Pubmed ID: 27612097 Superoxide Serves As a Putative Signal Molecule for Plant Cell Division: Overexpression of CaRLK1 Promotes the Plant Cell Cycle Via Accumulation of O and Decrease in H O Physiologia Plantarum. Feb, 2017 | Pubmed ID: 27528370 Genome-wide Diversity and Association Mapping for Capsaicinoids and Fruit Weight in Capsicum Annuum L Scientific Reports. 11, 2016 | Pubmed ID: 27901114 Genome-Wide Divergence and Linkage Disequilibrium Analyses for Revealed by Genome-Anchored Single Nucleotide Polymorphisms Frontiers in Plant Science. 2016 | Pubmed ID: 27857720 Genome-wide Analysis of Dof Transcription Factors Reveals Functional Characteristics During Development and Response to Biotic Stresses in Pepper Scientific Reports. Sep, 2016 | Pubmed ID: 27653666 Genome-Wide Comparative Analyses Reveal the Dynamic Evolution of Nucleotide-Binding Leucine-Rich Repeat Gene Family Among Solanaceae Plants Frontiers in Plant Science. 2016 | Pubmed ID: 27559340 Comparative Analyses of Ubiquitin-like ATG8 and Cysteine Protease ATG4 Autophagy Genes in the Plant Lineage and Cross-kingdom Processing of ATG8 by ATG4 Autophagy. Nov, 2016 | Pubmed ID: 27540766 Fine Mapping of Restorer-of-fertility in Pepper (Capsicum Annuum L.) Identified a Candidate Gene Encoding a Pentatricopeptide Repeat (PPR)-containing Protein TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Oct, 2016 | Pubmed ID: 27470425 Virus-induced Gene Silencing Reveals Signal Transduction Components Required for the Pvr9-mediated Hypersensitive Response in Nicotiana Benthamiana Virology. 08, 2016 | Pubmed ID: 27236305 An Ultra-high-density Bin Map Facilitates High-throughput QTL Mapping of Horticultural Traits in Pepper (Capsicum Annuum) DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes. Apr, 2016 | Pubmed ID: 26744365 Major Quantitative Trait Loci and Putative Candidate Genes for Powdery Mildew Resistance and Fruit-Related Traits Revealed by an Intraspecific Genetic Map for Watermelon (Citrullus Lanatus Var. Lanatus) PloS One. 2015 | Pubmed ID: 26700647 Molecular Marker Development and Genetic Diversity Exploration by RNA-seq in Platycodon Grandiflorum Genome / National Research Council Canada = Génome / Conseil National De Recherches Canada. Oct, 2015 | Pubmed ID: 26501479 Metabolomic Characterization of Hot Pepper (Capsicum Annuum "CM334") During Fruit Development Journal of Agricultural and Food Chemistry. Nov, 2015 | Pubmed ID: 26465673 Identification of Candidate Genes Associated with Fertility Restoration of Cytoplasmic Male-sterility in Onion (Allium Cepa L.) Using a Combination of Bulked Segregant Analysis and RNA-seq TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Nov, 2015 | Pubmed ID: 26215184 Recent Progresses on Functional Genomics in Plant Defense Briefings in Functional Genomics. Jul, 2015 | Pubmed ID: 26209046 De Novo Transcriptome Analysis to Identify Anthocyanin Biosynthesis Genes Responsible for Tissue-Specific Pigmentation in Zoysiagrass (Zoysia Japonica Steud.) PloS One. 2015 | Pubmed ID: 25905914 Molecular Characterization of Pvr9 That Confers a Hypersensitive Response to Pepper Mottle Virus (a Potyvirus) in Nicotiana Benthamiana Virology. Jul, 2015 | Pubmed ID: 25776758 RNA-dependent RNA Polymerase (NIb) of the Potyviruses is an Avirulence Factor for the Broad-spectrum Resistance Gene Pvr4 in Capsicum Annuum Cv. CM334 PloS One. 2015 | Pubmed ID: 25760376 Integrative Structural Annotation of De Novo RNA-Seq Provides an Accurate Reference Gene Set of the Enormous Genome of the Onion (Allium Cepa L.) DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes. Feb, 2015 | Pubmed ID: 25362073 Rpi-blb2-Mediated Hypersensitive Cell Death Caused by Phytophthora Infestans AVRblb2 Requires SGT1, but Not EDS1, NDR1, Salicylic Acid-, Jasmonic Acid-, or Ethylene-Mediated Signaling The Plant Pathology Journal. Sep, 2014 | Pubmed ID: 25289011 Tomato Male Sterile 1035 is Essential for Pollen Development and Meiosis in Anthers Journal of Experimental Botany. Dec, 2014 | Pubmed ID: 25262227 Combined Use of Bulked Segregant Analysis and Microarrays Reveals SNP Markers Pinpointing a Major QTL for Resistance to Phytophthora Capsici in Pepper TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Nov, 2014 | Pubmed ID: 25208646 Multiple Recognition of RXLR Effectors is Associated with Nonhost Resistance of Pepper Against Phytophthora Infestans The New Phytologist. Aug, 2014 | Pubmed ID: 24889686 Cucumber Pti1-L is a Cytoplasmic Protein Kinase Involved in Defense Responses and Salt Tolerance Journal of Plant Physiology. Jun, 2014 | Pubmed ID: 24877673 DbCRY: a Web-based Comparative and Evolutionary Genomics Platform for Blue-light Receptors Database : the Journal of Biological Databases and Curation. 2014 | Pubmed ID: 24816342 A Pepper MSRB2 Gene Confers Drought Tolerance in Rice Through the Protection of Chloroplast-targeted Genes PloS One. 2014 | Pubmed ID: 24614245 Rpi-blb2-mediated Late Blight Resistance in Nicotiana Benthamiana Requires SGT1 and Salicylic Acid-mediated Signaling but Not RAR1 or HSP90 FEBS Letters. Apr, 2014 | Pubmed ID: 24582656 A Simple Method for Screening of Plant NBS-LRR Genes That Confer a Hypersensitive Response to Plant Viruses and Its Application for Screening Candidate Pepper Genes Against Pepper Mottle Virus Journal of Virological Methods. Jun, 2014 | Pubmed ID: 24552951 Identification of Gene-specific Polymorphisms and Association with Capsaicin Pathway Metabolites in Capsicum Annuum L. Collections PloS One. 2014 | Pubmed ID: 24475113 Major Repeat Components Covering One-third of the Ginseng (Panax Ginseng C.A. Meyer) Genome and Evidence for Allotetraploidy The Plant Journal : for Cell and Molecular Biology. Mar, 2014 | Pubmed ID: 24456463 Genome Sequence of the Hot Pepper Provides Insights into the Evolution of Pungency in Capsicum Species Nature Genetics. Mar, 2014 | Pubmed ID: 24441736 Identification of Novel Pepper Genes Involved in Bax- or INF1-mediated Cell Death Responses by High-throughput Virus-induced Gene Silencing International Journal of Molecular Sciences. Nov, 2013 | Pubmed ID: 24256816 Capsicum Annuum Homeobox 1 (CaHB1) is a Nuclear Factor That Has Roles in Plant Development, Salt Tolerance, and Pathogen Defense Biochemical and Biophysical Research Communications. Dec, 2013 | Pubmed ID: 24239887 The Hot Pepper (Capsicum Annuum) MicroRNA Transcriptome Reveals Novel and Conserved Targets: a Foundation for Understanding MicroRNA Functional Roles in Hot Pepper PloS One. 2013 | Pubmed ID: 23737975 Multiple Classes of Immune-related Proteases Associated with the Cell Death Response in Pepper Plants PloS One. 2013 | Pubmed ID: 23696830 A Pepper (Capsicum Annuum L.) Metacaspase 9 (Camc9) Plays a Role in Pathogen-induced Cell Death in Plants Molecular Plant Pathology. Aug, 2013 | Pubmed ID: 23522353 Intraspecies Differences in Cold Hardiness, Carbohydrate Content and β-amylase Gene Expression of Vaccinium Corymbosum During Cold Acclimation and Deacclimation Tree Physiology. Dec, 2012 | Pubmed ID: 23135736 RNA-seq Pinpoints a Xanthomonas TAL-effector Activated Resistance Gene in a Large-crop Genome Proceedings of the National Academy of Sciences of the United States of America. Nov, 2012 | Pubmed ID: 23132937 Ectopic Expression of Capsicum-specific Cell Wall Protein Capsicum Annuum Senescence-delaying 1 (CaSD1) Delays Senescence and Induces Trichome Formation in Nicotiana Benthamiana Molecules and Cells. Apr, 2012 | Pubmed ID: 22441673 Evolution of the Large Genome in Capsicum Annuum Occurred Through Accumulation of Single-type Long Terminal Repeat Retrotransposons and Their Derivatives The Plant Journal : for Cell and Molecular Biology. Mar, 2012 | Pubmed ID: 22074025 A Common Plant Cell-wall Protein HyPRP1 Has Dual Roles As a Positive Regulator of Cell Death and a Negative Regulator of Basal Defense Against Pathogens The Plant Journal : for Cell and Molecular Biology. Mar, 2012 | Pubmed ID: 22023393 Use of a Secretion Trap Screen in Pepper Following Phytophthora Capsici Infection Reveals Novel Functions of Secreted Plant Proteins in Modulating Cell Death Molecular Plant-microbe Interactions : MPMI. Jun, 2011 | Pubmed ID: 21542767 Comparative Analysis of Pepper and Tomato Reveals Euchromatin Expansion of Pepper Genome Caused by Differential Accumulation of Ty3/Gypsy-like Elements BMC Genomics. Jan, 2011 | Pubmed ID: 21276256 Trichome Density of Main Stem is Tightly Linked to PepMoV Resistance in Chili Pepper (Capsicum Annuum L.) TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Apr, 2011 | Pubmed ID: 21184049 Characterization and Genetic Analysis of a Low-temperature-sensitive Mutant, Sy-2, in Capsicum Chinense TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Feb, 2011 | Pubmed ID: 20886202 Positive-selection and Ligation-independent Cloning Vectors for Large Scale in Planta Expression for Plant Functional Genomics Molecules and Cells. Dec, 2010 | Pubmed ID: 21340673 CaMsrB2, Pepper Methionine Sulfoxide Reductase B2, is a Novel Defense Regulator Against Oxidative Stress and Pathogen Attack Plant Physiology. Sep, 2010 | Pubmed ID: 20643759 Molecular Mapping and Characterization of a Single Dominant Gene Controlling CMV Resistance in Peppers (Capsicum Annuum L.) TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. May, 2010 | Pubmed ID: 20180096 Fine Mapping of Pepper Trichome Locus 1 Controlling Trichome Formation in Capsicum Annuum L. CM334 TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Apr, 2010 | Pubmed ID: 20033390 In Planta Expression Screens of Phytophthora Infestans RXLR Effectors Reveal Diverse Phenotypes, Including Activation of the Solanum Bulbocastanum Disease Resistance Protein Rpi-blb2 The Plant Cell. Sep, 2009 | Pubmed ID: 19794118 Evolution of Ribosomal DNA-derived Satellite Repeat in Tomato Genome BMC Plant Biology. Apr, 2009 | Pubmed ID: 19351415 SNUGB: a Versatile Genome Browser Supporting Comparative and Functional Fungal Genomics BMC Genomics. Dec, 2008 | Pubmed ID: 19055845 Pepper EST Database: Comprehensive in Silico Tool for Analyzing the Chili Pepper (Capsicum Annuum) Transcriptome BMC Plant Biology. Oct, 2008 | Pubmed ID: 18844979 BAC-derived Markers Converted from RFLP Linked to Phytophthora Capsici Resistance in Pepper (Capsicum Annuum L.) TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Dec, 2008 | Pubmed ID: 18795251 Integration of Cytogenetic and Genetic Linkage Maps Unveils the Physical Architecture of Tomato Chromosome 2 Genetics. Jul, 2008 | Pubmed ID: 18622034 Transcriptional Regulation of the Respiratory Genes in the Cyanobacterium Synechocystis Sp. PCC 6803 During the Early Response to Glucose Feeding Plant Physiology. Nov, 2007 | Pubmed ID: 17827271 Exploitation of Pepper EST-SSRs and an SSR-based Linkage Map TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Dec, 2006 | Pubmed ID: 17047912 Bases of Biocontrol: Sequence Predicts Synthesis and Mode of Action of Agrocin 84, the Trojan Horse Antibiotic That Controls Crown Gall Proceedings of the National Academy of Sciences of the United States of America. Jun, 2006 | Pubmed ID: 16731618 Identification of the Down-regulated Genes in a Mat1-2-deleted Strain of Gibberella Zeae, Using CDNA Subtraction and Microarray Analysis Fungal Genetics and Biology : FG & B. Apr, 2006 | Pubmed ID: 16504554 The Tomato Sequencing Project, the First Cornerstone of the International Solanaceae Project (SOL) Comparative and Functional Genomics. 2005 | Pubmed ID: 18629226 Split grøn fluorescerende proteiner System til at visualisere effektorer leveret fra bakterier under infektion Hye-Young Lee1, So Eui Lee1, Jongchan Woo2, Doil Choi1, Eunsook Park1 1Department of Plant Science, Plant Genomics and Breeding Institute, College of Agriculture and Life Science, Seoul National University, 2Department of Bioindustry and Bioresource Engineering, Sejong University JoVE 57719 Biology
Split grøn fluorescerende proteiner System til at visualisere effektorer leveret fra bakterier under infektion Hye-Young Lee1, So Eui Lee1, Jongchan Woo2, Doil Choi1, Eunsook Park1 1Department of Plant Science, Plant Genomics and Breeding Institute, College of Agriculture and Life Science, Seoul National University, 2Department of Bioindustry and Bioresource Engineering, Sejong University JoVE 57719 Biology