Doil Choi

Publications

• Coiled-coil and Leucine-rich Repeat Domain of the Potyvirus Resistance Protein, Pvr4, Has Distinct Role in Signaling and Pathogen Recognition
  Molecular Plant-microbe Interactions : MPMI. Apr, 2018  |   Pubmed ID: 29663867
• Genome and Evolution of the Shade-requiring Medicinal Herb Panax Ginseng
  Plant Biotechnology Journal. Mar, 2018  |   Pubmed ID: 29604169
• New Role of LTR-retrotransposons for Emergence and Expansion of Disease-resistance Genes and High-copy Gene Families in Plants
  BMB Reports. Feb, 2018  |   Pubmed ID: 29353598
• Identification of a Molecular Marker Tightly Linked to Bacterial Wilt Resistance in Tomato by Genome-wide SNP Analysis
  TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. May, 2018  |   Pubmed ID: 29352323
• Suppression or Activation of Immune Responses by Predicted Secreted Proteins of the Soybean Rust Pathogen Phakopsora Pachyrhizi
  Molecular Plant-microbe Interactions : MPMI. Jan, 2018  |   Pubmed ID: 29144203
• HSP70s Enhance a Phytophthora Infestans Effector-Induced Cell Death Via an MAPK Cascade in Nicotiana Benthamiana
  Molecular Plant-microbe Interactions : MPMI. Mar, 2018  |   Pubmed ID: 29140163
• Fine Mapping of the Genic Male-sterile Ms Gene in Capsicum Annuum L
  TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Jan, 2018  |   Pubmed ID: 29032401
• Molecular Mapping of , a Novel Locus Conferring Resistance to Powdery Mildew in Pepper ()
  Frontiers in Plant Science. 2017  |   Pubmed ID: 29276524
• New Reference Genome Sequences of Hot Pepper Reveal the Massive Evolution of Plant Disease-resistance Genes by Retroduplication
  Genome Biology. Nov, 2017  |   Pubmed ID: 29089032
• Nicotiana Benthamiana Matrix Metalloprotease 1 (NMMP1) Gene Confers Disease Resistance to Phytophthora Infestans in Tobacco and Potato Plants
  Journal of Plant Physiology. Nov, 2017  |   Pubmed ID: 28888160
• Expansion of Sesquiterpene Biosynthetic Gene Clusters in Pepper Confers Nonhost Resistance to the Irish Potato Famine Pathogen
  The New Phytologist. Aug, 2017  |   Pubmed ID: 28631815
• Spatiotemporal Monitoring of Effectors Via Type III Secretion Using Split Fluorescent Protein Fragments
  The Plant Cell. Jul, 2017  |   Pubmed ID: 28619883
• Harnessing Anthocyanin-rich Fruit: a Visible Reporter for Tracing Virus-induced Gene Silencing in Pepper Fruit
  Plant Methods. 2017  |   Pubmed ID: 28053648
• Genome Analysis of Hibiscus Syriacus Provides Insights of Polyploidization and Indeterminate Flowering in Woody Plants
  DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes. Feb, 2017  |   Pubmed ID: 28011721
• Current Understandings of Plant Nonhost Resistance
  Molecular Plant-microbe Interactions : MPMI. 01, 2017  |   Pubmed ID: 27925500
• Divergent Evolution of Multiple Virus-resistance Genes from a Progenitor in Capsicum Spp
  The New Phytologist. Jan, 2017  |   Pubmed ID: 27612097
• Superoxide Serves As a Putative Signal Molecule for Plant Cell Division: Overexpression of CaRLK1 Promotes the Plant Cell Cycle Via Accumulation of O and Decrease in H O
  Physiologia Plantarum. Feb, 2017  |   Pubmed ID: 27528370
• Genome-wide Diversity and Association Mapping for Capsaicinoids and Fruit Weight in Capsicum Annuum L
  Scientific Reports. 11, 2016  |   Pubmed ID: 27901114
• Genome-Wide Divergence and Linkage Disequilibrium Analyses for Revealed by Genome-Anchored Single Nucleotide Polymorphisms
  Frontiers in Plant Science. 2016  |   Pubmed ID: 27857720
• Genome-wide Analysis of Dof Transcription Factors Reveals Functional Characteristics During Development and Response to Biotic Stresses in Pepper
  Scientific Reports. Sep, 2016  |   Pubmed ID: 27653666
• Genome-Wide Comparative Analyses Reveal the Dynamic Evolution of Nucleotide-Binding Leucine-Rich Repeat Gene Family Among Solanaceae Plants
  Frontiers in Plant Science. 2016  |   Pubmed ID: 27559340
• Comparative Analyses of Ubiquitin-like ATG8 and Cysteine Protease ATG4 Autophagy Genes in the Plant Lineage and Cross-kingdom Processing of ATG8 by ATG4
  Autophagy. Nov, 2016  |   Pubmed ID: 27540766
• Fine Mapping of Restorer-of-fertility in Pepper (Capsicum Annuum L.) Identified a Candidate Gene Encoding a Pentatricopeptide Repeat (PPR)-containing Protein
  TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Oct, 2016  |   Pubmed ID: 27470425
• Virus-induced Gene Silencing Reveals Signal Transduction Components Required for the Pvr9-mediated Hypersensitive Response in Nicotiana Benthamiana
  Virology. 08, 2016  |   Pubmed ID: 27236305
• An Ultra-high-density Bin Map Facilitates High-throughput QTL Mapping of Horticultural Traits in Pepper (Capsicum Annuum)
  DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes. Apr, 2016  |   Pubmed ID: 26744365
• Major Quantitative Trait Loci and Putative Candidate Genes for Powdery Mildew Resistance and Fruit-Related Traits Revealed by an Intraspecific Genetic Map for Watermelon (Citrullus Lanatus Var. Lanatus)
  PloS One. 2015  |   Pubmed ID: 26700647
• Molecular Marker Development and Genetic Diversity Exploration by RNA-seq in Platycodon Grandiflorum
  Genome / National Research Council Canada = Génome / Conseil National De Recherches Canada. Oct, 2015  |   Pubmed ID: 26501479
• Metabolomic Characterization of Hot Pepper (Capsicum Annuum "CM334") During Fruit Development
  Journal of Agricultural and Food Chemistry. Nov, 2015  |   Pubmed ID: 26465673
• Identification of Candidate Genes Associated with Fertility Restoration of Cytoplasmic Male-sterility in Onion (Allium Cepa L.) Using a Combination of Bulked Segregant Analysis and RNA-seq
  TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Nov, 2015  |   Pubmed ID: 26215184
• Recent Progresses on Functional Genomics in Plant Defense
  Briefings in Functional Genomics. Jul, 2015  |   Pubmed ID: 26209046
• De Novo Transcriptome Analysis to Identify Anthocyanin Biosynthesis Genes Responsible for Tissue-Specific Pigmentation in Zoysiagrass (Zoysia Japonica Steud.)
  PloS One. 2015  |   Pubmed ID: 25905914
• Molecular Characterization of Pvr9 That Confers a Hypersensitive Response to Pepper Mottle Virus (a Potyvirus) in Nicotiana Benthamiana
  Virology. Jul, 2015  |   Pubmed ID: 25776758
• RNA-dependent RNA Polymerase (NIb) of the Potyviruses is an Avirulence Factor for the Broad-spectrum Resistance Gene Pvr4 in Capsicum Annuum Cv. CM334
  PloS One. 2015  |   Pubmed ID: 25760376
• Integrative Structural Annotation of De Novo RNA-Seq Provides an Accurate Reference Gene Set of the Enormous Genome of the Onion (Allium Cepa L.)
  DNA Research : an International Journal for Rapid Publication of Reports on Genes and Genomes. Feb, 2015  |   Pubmed ID: 25362073
• Rpi-blb2-Mediated Hypersensitive Cell Death Caused by Phytophthora Infestans AVRblb2 Requires SGT1, but Not EDS1, NDR1, Salicylic Acid-, Jasmonic Acid-, or Ethylene-Mediated Signaling
  The Plant Pathology Journal. Sep, 2014  |   Pubmed ID: 25289011
• Tomato Male Sterile 1035 is Essential for Pollen Development and Meiosis in Anthers
  Journal of Experimental Botany. Dec, 2014  |   Pubmed ID: 25262227
• Combined Use of Bulked Segregant Analysis and Microarrays Reveals SNP Markers Pinpointing a Major QTL for Resistance to Phytophthora Capsici in Pepper
  TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Nov, 2014  |   Pubmed ID: 25208646
• Multiple Recognition of RXLR Effectors is Associated with Nonhost Resistance of Pepper Against Phytophthora Infestans
  The New Phytologist. Aug, 2014  |   Pubmed ID: 24889686
• Cucumber Pti1-L is a Cytoplasmic Protein Kinase Involved in Defense Responses and Salt Tolerance
  Journal of Plant Physiology. Jun, 2014  |   Pubmed ID: 24877673
• DbCRY: a Web-based Comparative and Evolutionary Genomics Platform for Blue-light Receptors
  Database : the Journal of Biological Databases and Curation. 2014  |   Pubmed ID: 24816342
• A Pepper MSRB2 Gene Confers Drought Tolerance in Rice Through the Protection of Chloroplast-targeted Genes
  PloS One. 2014  |   Pubmed ID: 24614245
• Rpi-blb2-mediated Late Blight Resistance in Nicotiana Benthamiana Requires SGT1 and Salicylic Acid-mediated Signaling but Not RAR1 or HSP90
  FEBS Letters. Apr, 2014  |   Pubmed ID: 24582656
• A Simple Method for Screening of Plant NBS-LRR Genes That Confer a Hypersensitive Response to Plant Viruses and Its Application for Screening Candidate Pepper Genes Against Pepper Mottle Virus
  Journal of Virological Methods. Jun, 2014  |   Pubmed ID: 24552951
• Identification of Gene-specific Polymorphisms and Association with Capsaicin Pathway Metabolites in Capsicum Annuum L. Collections
  PloS One. 2014  |   Pubmed ID: 24475113
• Major Repeat Components Covering One-third of the Ginseng (Panax Ginseng C.A. Meyer) Genome and Evidence for Allotetraploidy
  The Plant Journal : for Cell and Molecular Biology. Mar, 2014  |   Pubmed ID: 24456463
• Genome Sequence of the Hot Pepper Provides Insights into the Evolution of Pungency in Capsicum Species
  Nature Genetics. Mar, 2014  |   Pubmed ID: 24441736
• Identification of Novel Pepper Genes Involved in Bax- or INF1-mediated Cell Death Responses by High-throughput Virus-induced Gene Silencing
  International Journal of Molecular Sciences. Nov, 2013  |   Pubmed ID: 24256816
• Capsicum Annuum Homeobox 1 (CaHB1) is a Nuclear Factor That Has Roles in Plant Development, Salt Tolerance, and Pathogen Defense
  Biochemical and Biophysical Research Communications. Dec, 2013  |   Pubmed ID: 24239887
• The Hot Pepper (Capsicum Annuum) MicroRNA Transcriptome Reveals Novel and Conserved Targets: a Foundation for Understanding MicroRNA Functional Roles in Hot Pepper
  PloS One. 2013  |   Pubmed ID: 23737975
• Multiple Classes of Immune-related Proteases Associated with the Cell Death Response in Pepper Plants
  PloS One. 2013  |   Pubmed ID: 23696830
• A Pepper (Capsicum Annuum L.) Metacaspase 9 (Camc9) Plays a Role in Pathogen-induced Cell Death in Plants
  Molecular Plant Pathology. Aug, 2013  |   Pubmed ID: 23522353
• Intraspecies Differences in Cold Hardiness, Carbohydrate Content and β-amylase Gene Expression of Vaccinium Corymbosum During Cold Acclimation and Deacclimation
  Tree Physiology. Dec, 2012  |   Pubmed ID: 23135736
• RNA-seq Pinpoints a Xanthomonas TAL-effector Activated Resistance Gene in a Large-crop Genome
  Proceedings of the National Academy of Sciences of the United States of America. Nov, 2012  |   Pubmed ID: 23132937
• Ectopic Expression of Capsicum-specific Cell Wall Protein Capsicum Annuum Senescence-delaying 1 (CaSD1) Delays Senescence and Induces Trichome Formation in Nicotiana Benthamiana
  Molecules and Cells. Apr, 2012  |   Pubmed ID: 22441673
• Evolution of the Large Genome in Capsicum Annuum Occurred Through Accumulation of Single-type Long Terminal Repeat Retrotransposons and Their Derivatives
  The Plant Journal : for Cell and Molecular Biology. Mar, 2012  |   Pubmed ID: 22074025
• A Common Plant Cell-wall Protein HyPRP1 Has Dual Roles As a Positive Regulator of Cell Death and a Negative Regulator of Basal Defense Against Pathogens
  The Plant Journal : for Cell and Molecular Biology. Mar, 2012  |   Pubmed ID: 22023393
• Use of a Secretion Trap Screen in Pepper Following Phytophthora Capsici Infection Reveals Novel Functions of Secreted Plant Proteins in Modulating Cell Death
  Molecular Plant-microbe Interactions : MPMI. Jun, 2011  |   Pubmed ID: 21542767
• Comparative Analysis of Pepper and Tomato Reveals Euchromatin Expansion of Pepper Genome Caused by Differential Accumulation of Ty3/Gypsy-like Elements
  BMC Genomics. Jan, 2011  |   Pubmed ID: 21276256
• Trichome Density of Main Stem is Tightly Linked to PepMoV Resistance in Chili Pepper (Capsicum Annuum L.)
  TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Apr, 2011  |   Pubmed ID: 21184049
• Characterization and Genetic Analysis of a Low-temperature-sensitive Mutant, Sy-2, in Capsicum Chinense
  TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Feb, 2011  |   Pubmed ID: 20886202
• Positive-selection and Ligation-independent Cloning Vectors for Large Scale in Planta Expression for Plant Functional Genomics
  Molecules and Cells. Dec, 2010  |   Pubmed ID: 21340673
• CaMsrB2, Pepper Methionine Sulfoxide Reductase B2, is a Novel Defense Regulator Against Oxidative Stress and Pathogen Attack
  Plant Physiology. Sep, 2010  |   Pubmed ID: 20643759
• Molecular Mapping and Characterization of a Single Dominant Gene Controlling CMV Resistance in Peppers (Capsicum Annuum L.)
  TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. May, 2010  |   Pubmed ID: 20180096
• Fine Mapping of Pepper Trichome Locus 1 Controlling Trichome Formation in Capsicum Annuum L. CM334
  TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Apr, 2010  |   Pubmed ID: 20033390
• In Planta Expression Screens of Phytophthora Infestans RXLR Effectors Reveal Diverse Phenotypes, Including Activation of the Solanum Bulbocastanum Disease Resistance Protein Rpi-blb2
  The Plant Cell. Sep, 2009  |   Pubmed ID: 19794118
• Evolution of Ribosomal DNA-derived Satellite Repeat in Tomato Genome
  BMC Plant Biology. Apr, 2009  |   Pubmed ID: 19351415
• SNUGB: a Versatile Genome Browser Supporting Comparative and Functional Fungal Genomics
  BMC Genomics. Dec, 2008  |   Pubmed ID: 19055845
• Pepper EST Database: Comprehensive in Silico Tool for Analyzing the Chili Pepper (Capsicum Annuum) Transcriptome
  BMC Plant Biology. Oct, 2008  |   Pubmed ID: 18844979
• BAC-derived Markers Converted from RFLP Linked to Phytophthora Capsici Resistance in Pepper (Capsicum Annuum L.)
  TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Dec, 2008  |   Pubmed ID: 18795251
• Integration of Cytogenetic and Genetic Linkage Maps Unveils the Physical Architecture of Tomato Chromosome 2
  Genetics. Jul, 2008  |   Pubmed ID: 18622034
• Transcriptional Regulation of the Respiratory Genes in the Cyanobacterium Synechocystis Sp. PCC 6803 During the Early Response to Glucose Feeding
  Plant Physiology. Nov, 2007  |   Pubmed ID: 17827271
• Exploitation of Pepper EST-SSRs and an SSR-based Linkage Map
  TAG. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. Dec, 2006  |   Pubmed ID: 17047912
• Bases of Biocontrol: Sequence Predicts Synthesis and Mode of Action of Agrocin 84, the Trojan Horse Antibiotic That Controls Crown Gall
  Proceedings of the National Academy of Sciences of the United States of America. Jun, 2006  |   Pubmed ID: 16731618
• Identification of the Down-regulated Genes in a Mat1-2-deleted Strain of Gibberella Zeae, Using CDNA Subtraction and Microarray Analysis
  Fungal Genetics and Biology : FG & B. Apr, 2006  |   Pubmed ID: 16504554
• The Tomato Sequencing Project, the First Cornerstone of the International Solanaceae Project (SOL)
  Comparative and Functional Genomics. 2005  |   Pubmed ID: 18629226