Forest Rohwer Biography Publications JoVE Articles Forest Rohwer has not added a biography. If you are Forest Rohwer and would like to personalize this page please email our Author Liaison for assistance. Publications Compounding Phages for Therapeutic Applications Viruses. Jul, 2023 | Pubmed ID: 37632008 Viral Predation Pressure on Coral Reefs BMC Biology. Apr, 2023 | Pubmed ID: 37038111 More Stages Decrease Dissipation in Irreversible Step Processes Entropy (Basel, Switzerland). Mar, 2023 | Pubmed ID: 36981427 Nocturnal Dissolved Organic Matter Release by Turf Algae and Its Role in the Microbialization of Reefs Functional Ecology. Aug, 2022 | Pubmed ID: 36247100 Distribution of Soil Viruses Across China and Their Potential Role in Phosphorous Metabolism Environmental Microbiome. Feb, 2022 | Pubmed ID: 35130971 Presence of SARS-CoV-2 RNA on Surfaces of Public Places and a Transportation System Located in a Densely Populated Urban Area in South America Viruses. Dec, 2021 | Pubmed ID: 35062223 Multi-Omics Study of Keystone Species in a Cystic Fibrosis Microbiome International Journal of Molecular Sciences. Nov, 2021 | Pubmed ID: 34769481 Space-filling and Benthic Competition on Coral Reefs PeerJ. 2021 | Pubmed ID: 34249480 The Landscape of Lysogeny Across Microbial Community Density, Diversity and Energetics Environmental Microbiology. Aug, 2021 | Pubmed ID: 34121301 Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients MSystems. Oct, 2020 | Pubmed ID: 33127739 A Distinct Contractile Injection System Gene Cluster Found in a Majority of Healthy Adult Human Microbiomes MSystems. Jul, 2020 | Pubmed ID: 32723799 Virulence As a Side Effect of Interspecies Interaction in Coral Pathogens MBio. 07, 2020 | Pubmed ID: 32694137 A Multiomic Analysis of in Situ Coral-turf Algal Interactions Proceedings of the National Academy of Sciences of the United States of America. 06, 2020 | Pubmed ID: 32482859 Decoding Diversity in a Coral Reef Fish Species Complex with Restricted Range Using Metagenomic Sequencing of Gut Contents Ecology and Evolution. Apr, 2020 | Pubmed ID: 32273998 Gp4 is a Nuclease Required for Morphogenesis of T4-like Bacteriophages Virology. 04, 2020 | Pubmed ID: 32056848 Genomic and Ecological Attributes of Marine Bacteriophages Encoding Bacterial Virulence Genes BMC Genomics. Feb, 2020 | Pubmed ID: 32024463 Dietary Prophage Inducers and Antimicrobials: Toward Landscaping the Human Gut Microbiome Gut Microbes. 07, 2020 | Pubmed ID: 31931655 Biophysical and Physiological Processes Causing Oxygen Loss from Coral Reefs ELife. 12, 2019 | Pubmed ID: 31793432 Impact of Bacteria Motility in the Encounter Rates with Bacteriophage in Mucus Scientific Reports. 11, 2019 | Pubmed ID: 31712565 Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis MSystems. Sep, 2019 | Pubmed ID: 31551401 Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information MBio. 04, 2019 | Pubmed ID: 30992350 Diel Population and Functional Synchrony of Microbial Communities on Coral Reefs Nature Communications. 04, 2019 | Pubmed ID: 30979882 Erratum for Schooley Et Al., "Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter Baumannii Infection" Antimicrobial Agents and Chemotherapy. 12, 2018 | Pubmed ID: 30478181 A Diversity-generating Retroelement Encoded by a Globally Ubiquitous Bacteroides Phage Microbiome. 10, 2018 | Pubmed ID: 30352623 Gradients in Primary Production Predict Trophic Strategies of Mixotrophic Corals Across Spatial Scales Current Biology : CB. 11, 2018 | Pubmed ID: 30344114 The Birth of Viromics: an Interview with Forest Rohwer Future Microbiology. 10, 2018 | Pubmed ID: 30311785 Before Platelets: the Production of Platelet-activating Factor During Growth and Stress in a Basal Marine Organism Proceedings. Biological Sciences. 08, 2018 | Pubmed ID: 30111600 Correction for Nguyen Et Al., "Bacteriophage Transcytosis Provides a Mechanism To Cross Epithelial Cell Layers" MBio. 01, 2018 | Pubmed ID: 29295916 A New Lineage of Eukaryotes Illuminates Early Mitochondrial Genome Reduction Current Biology : CB. Dec, 2017 | Pubmed ID: 29174886 Bacteriophage Transcytosis Provides a Mechanism To Cross Epithelial Cell Layers MBio. 11, 2017 | Pubmed ID: 29162715 Meta-mass Shift Chemical Profiling of Metabolomes from Coral Reefs Proceedings of the National Academy of Sciences of the United States of America. 10, 2017 | Pubmed ID: 29078340 Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung Cell Host & Microbe. Nov, 2017 | Pubmed ID: 29056429 Knowles &Rohwer Reply Nature. 09, 2017 | Pubmed ID: 28933437 Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter Baumannii Infection Antimicrobial Agents and Chemotherapy. 10, 2017 | Pubmed ID: 28807909 A Myovirus Encoding Both Photosystem I and II Proteins Enhances Cyclic Electron Flow in Infected Prochlorococcus Cells Nature Microbiology. Oct, 2017 | Pubmed ID: 28785078 Microbial Bioenergetics of Coral-algal Interactions PeerJ. 2017 | Pubmed ID: 28649468 Variability and Host Density Independence in Inductions-based Estimates of Environmental Lysogeny Nature Microbiology. Apr, 2017 | Pubmed ID: 28452987 Major Transitions in Dinoflagellate Evolution Unveiled by Phylotranscriptomics Proceedings of the National Academy of Sciences of the United States of America. 01, 2017 | Pubmed ID: 28028238 Viruses and the Origin of Microbiome Selection and Immunity The ISME Journal. 04, 2017 | Pubmed ID: 27983723 Piggyback-the-Winner in Host-associated Microbial Communities NPJ Biofilms and Microbiomes. 2016 | Pubmed ID: 28721247 Ecological Networking of Cystic Fibrosis Lung Infections NPJ Biofilms and Microbiomes. 2016 | Pubmed ID: 28649398 Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen MSystems. Nov-Dec, 2016 | Pubmed ID: 28028548 Viruses As Winners in the Game of Life Annual Review of Virology. 09, 2016 | Pubmed ID: 27741409 Metabolomics of Pulmonary Exacerbations Reveals the Personalized Nature of Cystic Fibrosis Disease PeerJ. 2016 | Pubmed ID: 27602256 Using Viromes to Predict Novel Immune Proteins in Non-model Organisms Proceedings. Biological Sciences. Aug, 2016 | Pubmed ID: 27581878 Global Microbialization of Coral Reefs Nature Microbiology. 04, 2016 | Pubmed ID: 27572833 Phage on Tap-a Quick and Efficient Protocol for the Preparation of Bacteriophage Laboratory Stocks PeerJ. 2016 | Pubmed ID: 27547567 Metabolomics of Reef Benthic Interactions Reveals a Bioactive Lipid Involved in Coral Defence Proceedings. Biological Sciences. Apr, 2016 | Pubmed ID: 27122568 Energetic Differences Between Bacterioplankton Trophic Groups and Coral Reef Resistance Proceedings. Biological Sciences. Apr, 2016 | Pubmed ID: 27097927 Re-evaluating the Health of Coral Reef Communities: Baselines and Evidence for Human Impacts Across the Central Pacific Proceedings. Biological Sciences. Jan, 2016 | Pubmed ID: 26740615 Microbial, Host and Xenobiotic Diversity in the Cystic Fibrosis Sputum Metabolome The ISME Journal. Jun, 2016 | Pubmed ID: 26623545 Stable and Sporadic Symbiotic Communities of Coral and Algal Holobionts The ISME Journal. May, 2016 | Pubmed ID: 26555246 Some of the Most Interesting CASP11 Targets Through the Eyes of Their Authors Proteins. 09, 2016 | Pubmed ID: 26473983 Metagenomic and Satellite Analyses of Red Snow in the Russian Arctic PeerJ. 2015 | Pubmed ID: 26713242 In Retrospect: A Century of Phage Lessons Nature. Dec, 2015 | Pubmed ID: 26632584 Can We Measure Beauty? Computational Evaluation of Coral Reef Aesthetics PeerJ. 2015 | Pubmed ID: 26587350 Subdiffusive Motion of Bacteriophage in Mucosal Surfaces Increases the Frequency of Bacterial Encounters Proceedings of the National Academy of Sciences of the United States of America. Nov, 2015 | Pubmed ID: 26483471 Gut DNA Viromes of Malawian Twins Discordant for Severe Acute Malnutrition Proceedings of the National Academy of Sciences of the United States of America. Sep, 2015 | Pubmed ID: 26351661 Closing the Gaps on the Viral Photosystem-I psaDCAB Gene Organization Environmental Microbiology. Dec, 2015 | Pubmed ID: 26310718 Metabolic Cascades in Marine Microbial Communities Proceedings of the National Academy of Sciences of the United States of America. May, 2015 | Pubmed ID: 25918428 Mass Spectral Similarity for Untargeted Metabolomics Data Analysis of Complex Mixtures International Journal of Mass Spectrometry. Feb, 2015 | Pubmed ID: 25844058 A Winogradsky-based Culture System Shows an Association Between Microbial Fermentation and Cystic Fibrosis Exacerbation The ISME Journal. Apr, 2015 | Pubmed ID: 25777574 Diversity of Viral Photosystem-I PsaA Genes The ISME Journal. Dec, 2014 | Pubmed ID: 25535938 A Winogradsky-based Culture System Shows an Association Between Microbial Fermentation and Cystic Fibrosis Exacerbation The ISME Journal. Dec, 2014 | Pubmed ID: 25514533 Stochastic Tracking of Infection in a CF Lung PloS One. 2014 | Pubmed ID: 25360611 Species-specific Viromes in the Ancestral Holobiont Hydra PloS One. 2014 | Pubmed ID: 25343582 The Origins of Ambient Biological Sound from Coral Reef Ecosystems in the Line Islands Archipelago The Journal of the Acoustical Society of America. Apr, 2014 | Pubmed ID: 25234977 Sequencing at Sea: Challenges and Experiences in Ion Torrent PGM Sequencing During the 2013 Southern Line Islands Research Expedition PeerJ. 2014 | Pubmed ID: 25177534 Local Genomic Adaptation of Coral Reef-associated Microbiomes to Gradients of Natural Variability and Anthropogenic Stressors Proceedings of the National Academy of Sciences of the United States of America. Jul, 2014 | Pubmed ID: 24982156 Evolution of TNF-induced Apoptosis Reveals 550 My of Functional Conservation Proceedings of the National Academy of Sciences of the United States of America. Jul, 2014 | Pubmed ID: 24927546 Biogeochemical Forces Shape the Composition and Physiology of Polymicrobial Communities in the Cystic Fibrosis Lung MBio. 2014 | Pubmed ID: 24643867 Clinical Insights from Metagenomic Analysis of Sputum Samples from Patients with Cystic Fibrosis Journal of Clinical Microbiology. Feb, 2014 | Pubmed ID: 24478471 Breath Gas Metabolites and Bacterial Metagenomes from Cystic Fibrosis Airways Indicate Active PH Neutral 2,3-butanedione Fermentation The ISME Journal. Jun, 2014 | Pubmed ID: 24401860 Challenging the State of the Art in Protein Structure Prediction: Highlights of Experimental Target Structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10 Proteins. Feb, 2014 | Pubmed ID: 24318984 Gnotobiotic Mouse Model of Phage-bacterial Host Dynamics in the Human Gut Proceedings of the National Academy of Sciences of the United States of America. Dec, 2013 | Pubmed ID: 24259713 Innate and Acquired Bacteriophage-mediated Immunity Bacteriophage. Jul, 2013 | Pubmed ID: 24228227 Influence of Coral and Algal Exudates on Microbially Mediated Reef Metabolism PeerJ. 2013 | Pubmed ID: 23882445 Visualization of Oxygen Distribution Patterns Caused by Coral and Algae PeerJ. 2013 | Pubmed ID: 23882443 Mechanistic Model of Rothia Mucilaginosa Adaptation Toward Persistence in the CF Lung, Based on a Genome Reconstructed from Metagenomic Data PloS One. 2013 | Pubmed ID: 23737977 Bacteriophage Adhering to Mucus Provide a Non-host-derived Immunity Proceedings of the National Academy of Sciences of the United States of America. Jun, 2013 | Pubmed ID: 23690590 Identification of a Novel Human Papillomavirus by Metagenomic Analysis of Samples from Patients with Febrile Respiratory Illness PloS One. 2013 | Pubmed ID: 23554892 Viral Information Biology & Philosophy. Mar, 2013 | Pubmed ID: 23482918 Structure and Function of a Cyanophage-encoded Peptide Deformylase The ISME Journal. Jun, 2013 | Pubmed ID: 23407310 Coral and Macroalgal Exudates Vary in Neutral Sugar Composition and Differentially Enrich Reef Bacterioplankton Lineages The ISME Journal. May, 2013 | Pubmed ID: 23303369 Environmental Distribution of Coral-associated Relatives of Apicomplexan Parasites The ISME Journal. Feb, 2013 | Pubmed ID: 23151646 Cystic Fibrosis Therapy: a Community Ecology Perspective American Journal of Respiratory Cell and Molecular Biology. Feb, 2013 | Pubmed ID: 23103995 Metagenomics and Metatranscriptomics: Windows on CF-associated Viral and Microbial Communities Journal of Cystic Fibrosis : Official Journal of the European Cystic Fibrosis Society. Mar, 2013 | Pubmed ID: 22951208 Mucus Distribution Model in a Lung with Cystic Fibrosis Computational and Mathematical Methods in Medicine. 2012 | Pubmed ID: 23118803 Oxygen Minimum Zones Harbour Novel Viral Communities with Low Diversity Environmental Microbiology. Nov, 2012 | Pubmed ID: 23039259 Assessing Coral Reefs on a Pacific-wide Scale Using the Microbialization Score PloS One. 2012 | Pubmed ID: 22970122 Unseen Players Shape Benthic Competition on Coral Reefs Trends in Microbiology. Dec, 2012 | Pubmed ID: 22944243 Va Virale : Séquençage Nouvelle Génération Appliqué Aux Populations De Bactériophage Dans L'intestin Humain Nature Reviews. Microbiology. Aug, 2012 | Pubmed ID: 22864264 The Microbial Olympics Nature Reviews. Microbiology. Aug, 2012 | Pubmed ID: 22796885 Global Analysis of Plastid Diversity Reveals Apicomplexan-related Lineages in Coral Reefs Current Biology : CB. Jul, 2012 | Pubmed ID: 22789997 Metagenomics and Future Perspectives in Virus Discovery Current Opinion in Virology. Feb, 2012 | Pubmed ID: 22440968 Grinder: a Versatile Amplicon and Shotgun Sequence Simulator Nucleic Acids Research. Jul, 2012 | Pubmed ID: 22434876 Microbienne à L'échelle Des Interactions Entre Les Récifs Coralliens Montastraea Annularis Et Algues Benthiques De Récif Proceedings. Biological Sciences / The Royal Society. Apr, 2012 | Pubmed ID: 22090385 Case Studies of the Spatial Heterogeneity of DNA Viruses in the Cystic Fibrosis Lung American Journal of Respiratory Cell and Molecular Biology. Feb, 2012 | Pubmed ID: 21980056 Noir De Récifs : Induites Par Le Fer Déphasages Sur Les Récifs Coralliens The ISME Journal. Mar, 2012 | Pubmed ID: 21881615 Spatial Distribution of Microbial Communities in the Cystic Fibrosis Lung The ISME Journal. Feb, 2012 | Pubmed ID: 21796216 New Abundant Microbial Groups in Aquatic Hypersaline Environments Scientific Reports. 2011 | Pubmed ID: 22355652 Preuve D'une Population Robuste Bactériophage Résident a Révélé Par L'analyse De L'humain Virome Salivaire The ISME Journal. Dec, 2011 | Pubmed ID: 22158393 Effets Des Récifs Coralliens Des Producteurs Primaires Benthique Sur Le Carbone Organique Dissous Et L'activité Microbienne PloS One. 2011 | Pubmed ID: 22125645 Les Enquêtes Larges De La Diversité ADN Viral Obtenus à L'aide De Métagénomique Des Virus Les Moustiques PloS One. 2011 | Pubmed ID: 21674005 Métagénomique Comparative Des Traits Microbiennes Au Sein Des Communautés Virales Océaniques The ISME Journal. Jul, 2011 | Pubmed ID: 21307954 Diversité Microbienne Associée à Quatre Groupes Fonctionnels Des Algues Benthiques De Corail Et Les Récifs Coralliens Montastraea Annularis Environmental Microbiology. May, 2011 | Pubmed ID: 21272183 Reconstituer Un Puzzle : Existence De Cyanophages Contenant Les Deux Photosystème-I Et Photosystème II Suites De Gène Déduits De Datasets Métagénomique Océanique Environmental Microbiology. Jan, 2011 | Pubmed ID: 20649642 Metagenomic Detection of Phage-encoded Platelet-binding Factors in the Human Oral Cavity Proceedings of the National Academy of Sciences of the United States of America. Mar, 2011 | Pubmed ID: 20547834 Viruses in the Faecal Microbiota of Monozygotic Twins and Their Mothers Nature. Jul, 2010 | Pubmed ID: 20631792 TagCleaner: Identification and Removal of Tag Sequences from Genomic and Metagenomic Datasets BMC Bioinformatics. 2010 | Pubmed ID: 20573248 La Lagune à L'atoll De Caroline/Millennium, République De Kiribati : Histoire Naturelle D'un écosystème Presque Vierge PloS One. 2010 | Pubmed ID: 20539746 Metatranscriptomic Array Analysis of 'Candidatus Accumulibacter Phosphatis'-enriched Enhanced Biological Phosphorus Removal Sludge Environmental Microbiology. May, 2010 | Pubmed ID: 20148930 Viral and Microbial Community Dynamics in Four Aquatic Environments The ISME Journal. Jun, 2010 | Pubmed ID: 20147985 L'outil Métagénomique NVGR Et Ses Estimations La Taille Du Génome Viral Et Microbienne Moyenne Dans Quatre Principaux Biomes PLoS Computational Biology. Dec, 2009 | Pubmed ID: 20011103 Hyperspectrale Et Analyses Physiologiques Des Interactions Corail-algues PloS One. 2009 | Pubmed ID: 19956632 Metagenomic Islands of Hyperhalophiles: the Case of Salinibacter Ruber BMC Genomics. 2009 | Pubmed ID: 19951421 Roles of Viruses in the Environment Environmental Microbiology. Nov, 2009 | Pubmed ID: 19878268 Explaining Microbial Population Genomics Through Phage Predation Nature Reviews. Microbiology. Nov, 2009 | Pubmed ID: 19834481 Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-cystic Fibrosis Individuals PloS One. 2009 | Pubmed ID: 19816605 Photosystem I Gene Cassettes Are Present in Marine Virus Genomes Nature. Sep, 2009 | Pubmed ID: 19710652 Genomic Analysis of Multiple Roseophage SIO1 Strains Environmental Microbiology. Nov, 2009 | Pubmed ID: 19659499 Viruses Manipulate the Marine Environment Nature. May, 2009 | Pubmed ID: 19444207 Analyse Métagénomique Des Holobionts Coral Stressés Environmental Microbiology. Aug, 2009 | Pubmed ID: 19397678 Metagenomic Signatures of 86 Microbial and Viral Metagenomes Environmental Microbiology. Jul, 2009 | Pubmed ID: 19302541 Laboratory Procedures to Generate Viral Metagenomes Nature Protocols. 2009 | Pubmed ID: 19300441 Metagenomic and Stable Isotopic Analyses of Modern Freshwater Microbialites in Cuatro Ciénegas, Mexico Environmental Microbiology. Jan, 2009 | Pubmed ID: 18764874 Analyse Métagénomique Indique Que Les Agents Stressants Induire La Production De L'herpès-virus Semblables Au Corail Porites Compressa Proceedings of the National Academy of Sciences of the United States of America. Nov, 2008 | Pubmed ID: 19017800 Metagenomic Analysis of Lysogeny in Tampa Bay: Implications for Prophage Gene Expression PloS One. 2008 | Pubmed ID: 18810270 Dissecting Microbial Employment Nature Biotechnology. Sep, 2008 | Pubmed ID: 18779810 La Diversité Virale Et La Dynamique Dans Un Intestin Du Nourrisson Research in Microbiology. Jun, 2008 | Pubmed ID: 18541415 Communautés Virales Associée Aux Coraux Sains Et De Blanchiment Environmental Microbiology. Sep, 2008 | Pubmed ID: 18479440 Le Métagénome Aéroporté Dans Un Environnement Intérieur En Milieu Urbain PloS One. 2008 | Pubmed ID: 18382653 Profilage Métagénomique Fonctionnelle De Neuf Biomes Nature. Apr, 2008 | Pubmed ID: 18337718 Biodiversité Et La Biogéographie Des Phages Dans Stromatolites Modernes Et Thrombolites Nature. Mar, 2008 | Pubmed ID: 18311127 Écologie Microbienne Des Quatre Atolls Coralliens Dans Les îles De La Ligne Du Nord PloS One. 2008 | Pubmed ID: 18301735 Baselines and Degradation of Coral Reefs in the Northern Line Islands PloS One. 2008 | Pubmed ID: 18301734 Classification Phylogénétique Des Fragments D'ADN Courts De L'environnement Nucleic Acids Research. Apr, 2008 | Pubmed ID: 18285365 A Bacterial Metapopulation Adapts Locally to Phage Predation Despite Global Dispersal Genome Research. Feb, 2008 | Pubmed ID: 18077539 Metagenomic Analysis of the Microbial Community Associated with the Coral Porites Astreoides Environmental Microbiology. Nov, 2007 | Pubmed ID: 17922755 Analyses ARNr Métagénomiques Et Petites Sous-unités De Révéler La Diversité Génétique Des Bactéries, Archées, Champignons, Virus Et Dans Le Sol Applied and Environmental Microbiology. Nov, 2007 | Pubmed ID: 17827313 Distribution and Diversity of Archaeal Ammonia Monooxygenase Genes Associated with Corals Applied and Environmental Microbiology. Sep, 2007 | Pubmed ID: 17586663 Power Law Rank-abundance Models for Marine Phage Communities FEMS Microbiology Letters. Aug, 2007 | Pubmed ID: 17559407 Phage Metagenomics Methods in Enzymology. 2007 | Pubmed ID: 17352928 Real-time Microbial Ecology Environmental Microbiology. Jan, 2007 | Pubmed ID: 17227406 Les Viromes Marines De Quatre Régions Océaniques PLoS Biology. Nov, 2006 | Pubmed ID: 17090214 Rapid Estimation of Microbial Numbers in Water Using Bulk Fluorescence Environmental Microbiology. Oct, 2006 | Pubmed ID: 16958758 Trouver Nouveaux Gènes Dans Les Communautés Bactériennes Isolées De L'environnement Bioinformatics (Oxford, England). Jul, 2006 | Pubmed ID: 16873483 Widespread Occurrence of Phage-encoded Exotoxin Genes in Terrestrial and Aquatic Environments in Southern California FEMS Microbiology Letters. Aug, 2006 | Pubmed ID: 16842371 Indirect Effects of Algae on Coral: Algae-mediated, Microbe-induced Coral Mortality Ecology Letters. Jul, 2006 | Pubmed ID: 16796574 Utilisation Pyroséquençage Mettra En Lumière Sur L'écologie Microbienne Des Mines Profondes BMC Genomics. 2006 | Pubmed ID: 16549033 Une Application De La Statistique De Métagénomique Comparatives BMC Bioinformatics. 2006 | Pubmed ID: 16549025 FastGroupII: a Web-based Bioinformatics Platform for Analyses of Large 16S RDNA Libraries BMC Bioinformatics. 2006 | Pubmed ID: 16464253 ARN Viral Communautaire Dans Les Matières Fécales De L'homme: Prévalence Des Virus Pathogènes Des Plantes PLoS Biology. Jan, 2006 | Pubmed ID: 16336043 Method for Discovering Novel DNA Viruses in Blood Using Viral Particle Selection and Shotgun Sequencing BioTechniques. Nov, 2005 | Pubmed ID: 16312220 Here a Virus, There a Virus, Everywhere the Same Virus? Trends in Microbiology. Jun, 2005 | Pubmed ID: 15936660 Séquence Complète Du Génome PhiHSIC, Un Phage Marine Pseudotemperate De Listonella Pelagia Applied and Environmental Microbiology. Jun, 2005 | Pubmed ID: 15933034 La Métagénomique Des Virus Nature Reviews. Microbiology. Jun, 2005 | Pubmed ID: 15886693 A Glimpse into the Expanded Genome Content of Vibrio Cholerae Through Identification of Genes Present in Environmental Strains Journal of Bacteriology. May, 2005 | Pubmed ID: 15838025 Three Prochlorococcus Cyanophage Genomes: Signature Features and Ecological Interpretations PLoS Biology. May, 2005 | Pubmed ID: 15828858 PHACCS, an Online Tool for Estimating the Structure and Diversity of Uncultured Viral Communities Using Metagenomic Information BMC Bioinformatics. 2005 | Pubmed ID: 15743531 2004 ASM Conférence Sur La Biologie Des Phages Nouvelle : Le « Sommet De Phage » Molecular Microbiology. Mar, 2005 | Pubmed ID: 15720541 Microbial Communities Associated with Skeletal Tumors on Porites Compressa FEMS Microbiology Letters. Feb, 2005 | Pubmed ID: 15686846 Widespread Association of a Rickettsiales-like Bacterium with Reef-building Corals Environmental Microbiology. Nov, 2004 | Pubmed ID: 15479247 Movement of Viruses Between Biomes Applied and Environmental Microbiology. Oct, 2004 | Pubmed ID: 15466522 Transfer of Photosynthesis Genes to and from Prochlorococcus Viruses Proceedings of the National Academy of Sciences of the United States of America. Jul, 2004 | Pubmed ID: 15256601 Global Distribution of Nearly Identical Phage-encoded DNA Sequences FEMS Microbiology Letters. Jul, 2004 | Pubmed ID: 15251204 Diversity and Population Structure of a Near-shore Marine-sediment Viral Community Proceedings. Biological Sciences / The Royal Society. Mar, 2004 | Pubmed ID: 15156913 Phage Community Dynamics in Hot Springs Applied and Environmental Microbiology. Mar, 2004 | Pubmed ID: 15006788 Multispecies Microbial Mutualisms on Coral Reefs: the Host As a Habitat The American Naturalist. Oct, 2003 | Pubmed ID: 14583857 Genome Sequences of Two Closely Related Vibrio Parahaemolyticus Phages, VP16T and VP16C Journal of Bacteriology. Nov, 2003 | Pubmed ID: 14563879 Metagenomic Analyses of an Uncultured Viral Community from Human Feces Journal of Bacteriology. Oct, 2003 | Pubmed ID: 14526037 Global Phage Diversity Cell. Apr, 2003 | Pubmed ID: 12705861 IL-2 Activation of a PI3K-dependent STAT3 Serine Phosphorylation Pathway in Primary Human T Cells Cellular Signalling. Jun, 2003 | Pubmed ID: 12681450 Marine Phage Genomics Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology. Dec, 2002 | Pubmed ID: 12470812 Genomic Analysis of Uncultured Marine Viral Communities Proceedings of the National Academy of Sciences of the United States of America. Oct, 2002 | Pubmed ID: 12384570 The Phage Proteomic Tree: a Genome-based Taxonomy for Phage Journal of Bacteriology. Aug, 2002 | Pubmed ID: 12142423 Use of 16S Ribosomal DNA for Delineation of Marine Bacterioplankton Species Applied and Environmental Microbiology. Jul, 2002 | Pubmed ID: 12089052 T4 Bacteriophage and E. coli Interaction in the Murine Intestine: A Prototypical Model for Studying Host-Bacteriophage Dynamics In Vivo JoVE 65906 Immunology and Infection Arches de récifs coralliens: un mésocosme in situ et une boîte à outils pour rassembler des communautés de récifs coralliens Jason L. Baer1, Jessica Carilli2, Bart Chadwick3, Mark Hatay1, Anneke van der Geer1, Yun Scholten4, William Barnes4, Jenna Aquino1, Ashton Ballard1, Mark Little1, Jared Brzenski5, Xiaofeng Liu6, Gunther Rosen2, Pei-Fang Wang2, Jose Castillo5, Andreas F. Haas4, Aaron C. Hartmann7, Forest Rohwer1 1Department of Biology, San Diego State University, 2Energy and Environmental Sciences Branch, Naval Information Warfare Center (NIWC) Pacific, 3Coastal Monitoring Associates, 4Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, 5Computational Science Research Center, San Diego State University, 6Department of Aerospace Engineering, San Diego State University, 7Department of Organismic and Evolutionary Biology, Harvard University JoVE 64778 Environment Écouvillonner l’environnement urbain - Un pipeline pour l’échantillonnage et la détection du SARS-CoV-2 dans les réservoirs environnementaux Maria I. Rojas1,2, Steven S. Giles3, Mark Little1,2, Rafael Baron1,2, Isabella Livingston1,2, Taylor R. T. Dagenais3, Jason Baer1,2, Ana G. Cobián-Güemes1,2, Brandie White1,2, Forest Rohwer1,2 1Department of Biology, San Diego State University, 2Viral Information Institute, San Diego State University, 3Big Rose Web Design, LLC JoVE 62379 Biology Phenomics de phages: approches physiologiques à caractériser de nouvelles protéines virales Savannah E. Sanchez1, Daniel A. Cuevas2, Jason E. Rostron1, Tiffany Y. Liang3, Cullen G. Pivaroff1, Matthew R. Haynes1, Jim Nulton4, Ben Felts4, Barbara A. Bailey4, Peter Salamon4, Robert A. Edwards1,5,6, Alex B. Burgin7, Anca M. Segall1, Forest Rohwer1 1Department of Biology, San Diego State University, 2Computational Science Research Center, San Diego State University, 3Bioinformatics and Medical Informatics Research Center, San Diego State University, 4Department of Mathematics and Statistics, San Diego State University, 5Department of Computer Science, San Diego State University, 6Mathematics and Computer Science Division, Argonne National Laboratory, 7SPARC Committee, Broad Institute Immunology and Infection Purifier l'impur: séquençage métagénomes et Metatranscriptomes de complexes échantillons d'animaux associés Yan Wei Lim1, Matthew Haynes2, Mike Furlan1, Charles E. Robertson3, J. Kirk Harris4, Forest Rohwer1 1Department of Biology, San Diego State University, 2DOE Joint Genome Institute, 3Department of Molecular, Cellular and Developmental Biology, University of Colorado, 4Department of Pediatrics, School of Medicine, University of Colorado JoVE 52117 Biology Démêler les joueurs invisibles dans l'océan - un guide de terrain à la chimie de l'eau et de microbiologie marine Andreas Florian Haas1, Ben Knowles1, Yan Wei Lim1, Tracey McDole Somera2, Linda Wegley Kelly1, Mark Hatay1, Forest Rohwer1 1Department of Biology, San Diego State University, 2Scripps Institution of Oceanography, University of California San Diego Environment
T4 Bacteriophage and E. coli Interaction in the Murine Intestine: A Prototypical Model for Studying Host-Bacteriophage Dynamics In Vivo JoVE 65906 Immunology and Infection
Arches de récifs coralliens: un mésocosme in situ et une boîte à outils pour rassembler des communautés de récifs coralliens Jason L. Baer1, Jessica Carilli2, Bart Chadwick3, Mark Hatay1, Anneke van der Geer1, Yun Scholten4, William Barnes4, Jenna Aquino1, Ashton Ballard1, Mark Little1, Jared Brzenski5, Xiaofeng Liu6, Gunther Rosen2, Pei-Fang Wang2, Jose Castillo5, Andreas F. Haas4, Aaron C. Hartmann7, Forest Rohwer1 1Department of Biology, San Diego State University, 2Energy and Environmental Sciences Branch, Naval Information Warfare Center (NIWC) Pacific, 3Coastal Monitoring Associates, 4Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, 5Computational Science Research Center, San Diego State University, 6Department of Aerospace Engineering, San Diego State University, 7Department of Organismic and Evolutionary Biology, Harvard University JoVE 64778 Environment
Écouvillonner l’environnement urbain - Un pipeline pour l’échantillonnage et la détection du SARS-CoV-2 dans les réservoirs environnementaux Maria I. Rojas1,2, Steven S. Giles3, Mark Little1,2, Rafael Baron1,2, Isabella Livingston1,2, Taylor R. T. Dagenais3, Jason Baer1,2, Ana G. Cobián-Güemes1,2, Brandie White1,2, Forest Rohwer1,2 1Department of Biology, San Diego State University, 2Viral Information Institute, San Diego State University, 3Big Rose Web Design, LLC JoVE 62379 Biology
Phenomics de phages: approches physiologiques à caractériser de nouvelles protéines virales Savannah E. Sanchez1, Daniel A. Cuevas2, Jason E. Rostron1, Tiffany Y. Liang3, Cullen G. Pivaroff1, Matthew R. Haynes1, Jim Nulton4, Ben Felts4, Barbara A. Bailey4, Peter Salamon4, Robert A. Edwards1,5,6, Alex B. Burgin7, Anca M. Segall1, Forest Rohwer1 1Department of Biology, San Diego State University, 2Computational Science Research Center, San Diego State University, 3Bioinformatics and Medical Informatics Research Center, San Diego State University, 4Department of Mathematics and Statistics, San Diego State University, 5Department of Computer Science, San Diego State University, 6Mathematics and Computer Science Division, Argonne National Laboratory, 7SPARC Committee, Broad Institute Immunology and Infection
Purifier l'impur: séquençage métagénomes et Metatranscriptomes de complexes échantillons d'animaux associés Yan Wei Lim1, Matthew Haynes2, Mike Furlan1, Charles E. Robertson3, J. Kirk Harris4, Forest Rohwer1 1Department of Biology, San Diego State University, 2DOE Joint Genome Institute, 3Department of Molecular, Cellular and Developmental Biology, University of Colorado, 4Department of Pediatrics, School of Medicine, University of Colorado JoVE 52117 Biology
Démêler les joueurs invisibles dans l'océan - un guide de terrain à la chimie de l'eau et de microbiologie marine Andreas Florian Haas1, Ben Knowles1, Yan Wei Lim1, Tracey McDole Somera2, Linda Wegley Kelly1, Mark Hatay1, Forest Rohwer1 1Department of Biology, San Diego State University, 2Scripps Institution of Oceanography, University of California San Diego Environment
