J. Gregory Caporaso Department of Biological Sciences, Center for Microbial Genetics and Genomics Northern Arizona University Biography Publications Institution JoVE Articles J. Gregory Caporaso has not added a biography. If you are J. Gregory Caporaso and would like to personalize this page please email our Author Liaison for assistance. Publications Advancing the Microbiome Research Community Cell. Oct, 2014 | Pubmed ID: 25303518 Subsampled Open-reference Clustering Creates Consistent, Comprehensive OTU Definitions and Scales to Billions of Sequences PeerJ. 2014 | Pubmed ID: 25177538 Individual Diet Has Sex-dependent Effects on Vertebrate Gut Microbiota Nature Communications. 2014 | Pubmed ID: 25072318 Conducting a Microbiome Study Cell. Jul, 2014 | Pubmed ID: 25036628 Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity MBio. 2014 | Pubmed ID: 25028427 Major Histocompatibility Complex Class IIb Polymorphism Influences Gut Microbiota Composition and Diversity Molecular Ecology. Oct, 2014 | Pubmed ID: 24975397 Individuals' Diet Diversity Influences Gut Microbial Diversity in Two Freshwater Fish (threespine Stickleback and Eurasian Perch) Ecology Letters. Aug, 2014 | Pubmed ID: 24847735 The Large-scale Blast Score Ratio (LS-BSR) Pipeline: a Method to Rapidly Compare Genetic Content Between Bacterial Genomes PeerJ. 2014 | Pubmed ID: 24749011 The Personal Human Oral Microbiome Obscures the Effects of Treatment on Periodontal Disease PloS One. 2014 | Pubmed ID: 24489772 Advancing Our Understanding of the Human Microbiome Using QIIME Methods in Enzymology. 2013 | Pubmed ID: 24060131 Predictive Functional Profiling of Microbial Communities Using 16S RRNA Marker Gene Sequences Nature Biotechnology. Sep, 2013 | Pubmed ID: 23975157 Meeting Report: Fungal Its Workshop (october 2012) Standards in Genomic Sciences. Apr, 2013 | Pubmed ID: 23961317 The Ecology of Microbial Communities Associated with Macrocystis Pyrifera PloS One. 2013 | Pubmed ID: 23840715 Cohabiting Family Members Share Microbiota with One Another and with Their Dogs ELife. 2013 | Pubmed ID: 23599893 A Meta-analysis of Changes in Bacterial and Archaeal Communities with Time The ISME Journal. Aug, 2013 | Pubmed ID: 23575374 Evidence for a Persistent Microbial Seed Bank Throughout the Global Ocean Proceedings of the National Academy of Sciences of the United States of America. Mar, 2013 | Pubmed ID: 23487761 From Molecules to Dynamic Biological Communities Biology & Philosophy. Mar, 2013 | Pubmed ID: 23483075 Bacterial Diversity in Two Neonatal Intensive Care Units (NICUs) PloS One. 2013 | Pubmed ID: 23372757 Quality-filtering Vastly Improves Diversity Estimates from Illumina Amplicon Sequencing Nature Methods. Jan, 2013 | Pubmed ID: 23202435 Diversity, Distribution and Sources of Bacteria in Residential Kitchens Environmental Microbiology. Feb, 2013 | Pubmed ID: 23171378 Collaborative Cloud-enabled Tools Allow Rapid, Reproducible Biological Insights The ISME Journal. Mar, 2013 | Pubmed ID: 23096404 Phylogenetic Stratigraphy in the Guerrero Negro Hypersaline Microbial Mat The ISME Journal. Jan, 2013 | Pubmed ID: 22832344 The Biological Observation Matrix (BIOM) Format Or: How I Learned to Stop Worrying and Love the Ome-ome GigaScience. 2012 | Pubmed ID: 23587224 Cross-biome Metagenomic Analyses of Soil Microbial Communities and Their Functional Attributes Proceedings of the National Academy of Sciences of the United States of America. Dec, 2012 | Pubmed ID: 23236140 Using QIIME to Analyze 16S RRNA Gene Sequences from Microbial Communities Current Protocols in Microbiology. Nov, 2012 | Pubmed ID: 23184592 Human Gut Microbiome Viewed Across Age and Geography Nature. Jun, 2012 | Pubmed ID: 22699611 The Interpersonal and Intrapersonal Diversity of Human-associated Microbiota in Key Body Sites The Journal of Allergy and Clinical Immunology. May, 2012 | Pubmed ID: 22541361 Ultra-high-throughput Microbial Community Analysis on the Illumina HiSeq and MiSeq Platforms The ISME Journal. Aug, 2012 | Pubmed ID: 22402401 Sequencing Our Way Towards Understanding Global Eukaryotic Biodiversity Trends in Ecology & Evolution. Apr, 2012 | Pubmed ID: 22244672 Comparison of Illumina Paired-end and Single-direction Sequencing for Microbial 16S RRNA Gene Amplicon Surveys The ISME Journal. Jul, 2012 | Pubmed ID: 22170427 The Western English Channel Contains a Persistent Microbial Seed Bank The ISME Journal. Jun, 2012 | Pubmed ID: 22071345 Defining Seasonal Marine Microbial Community Dynamics The ISME Journal. Feb, 2012 | Pubmed ID: 21850055 Impact of Training Sets on Classification of High-throughput Bacterial 16s RRNA Gene Surveys The ISME Journal. Jan, 2012 | Pubmed ID: 21716311 The Under-recognized Dominance of Verrucomicrobia in Soil Bacterial Communities Soil Biology & Biochemistry. Jul, 2011 | Pubmed ID: 22267877 Using QIIME to Analyze 16S RRNA Gene Sequences from Microbial Communities Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [et Al.]. Dec, 2011 | Pubmed ID: 22161565 TopiaryExplorer: Visualizing Large Phylogenetic Trees with Environmental Metadata Bioinformatics (Oxford, England). Nov, 2011 | Pubmed ID: 21903626 Moving Pictures of the Human Microbiome Genome Biology. 2011 | Pubmed ID: 21624126 New Insight into the Diversity of Life's Building Blocks: Evenness, Not Variance Astrobiology. Apr, 2011 | Pubmed ID: 21417743 Host-associated and Free-living Phage Communities Differ Profoundly in Phylogenetic Composition PloS One. 2011 | Pubmed ID: 21383980 PrimerProspector: De Novo Design and Taxonomic Analysis of Barcoded Polymerase Chain Reaction Primers Bioinformatics (Oxford, England). Apr, 2011 | Pubmed ID: 21349862 Bacterial Communities Associated with the Lichen Symbiosis Applied and Environmental Microbiology. Feb, 2011 | Pubmed ID: 21169444 Examining the Global Distribution of Dominant Archaeal Populations in Soil The ISME Journal. May, 2011 | Pubmed ID: 21085198 Global Patterns of 16S RRNA Diversity at a Depth of Millions of Sequences Per Sample Proceedings of the National Academy of Sciences of the United States of America. Mar, 2011 | Pubmed ID: 20534432 Soil Bacterial and Fungal Communities Across a PH Gradient in an Arable Soil The ISME Journal. Oct, 2010 | Pubmed ID: 20445636 QIIME Allows Analysis of High-throughput Community Sequencing Data Nature Methods. May, 2010 | Pubmed ID: 20383131 PyNAST: a Flexible Tool for Aligning Sequences to a Template Alignment Bioinformatics (Oxford, England). Jan, 2010 | Pubmed ID: 19914921 Detecting Coevolution Without Phylogenetic Trees? Tree-ignorant Metrics of Coevolution Perform As Well As Tree-aware Metrics BMC Evolutionary Biology. 2008 | Pubmed ID: 19055758 Concept Recognition for Extracting Protein Interaction Relations from Biomedical Text Genome Biology. 2008 | Pubmed ID: 18834500 Intrinsic Evaluation of Text Mining Tools May Not Predict Performance on Realistic Tasks Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2008 | Pubmed ID: 18229722 Rapid Pattern Development for Concept Recognition Systems: Application to Point Mutations Journal of Bioinformatics and Computational Biology. Dec, 2007 | Pubmed ID: 18172927 PyCogent: a Toolkit for Making Sense from Sequence Genome Biology. 2007 | Pubmed ID: 17708774 MutationFinder: a High-performance System for Extracting Point Mutation Mentions from Text Bioinformatics (Oxford, England). Jul, 2007 | Pubmed ID: 17495998 Error Minimization and Coding Triplet/binding Site Associations Are Independent Features of the Canonical Genetic Code Journal of Molecular Evolution. Nov, 2005 | Pubmed ID: 16211428 Origins of the Genetic Code: the Escaped Triplet Theory Annual Review of Biochemistry. 2005 | Pubmed ID: 15952885 家禽生産のサンプルからの細菌群集の定性的および定量的評価のためのハイブリッドDNA抽出法 Michael J. Rothrock Jr.1, Kelli L. Hiett2, John Gamble3, Andrew C. Caudill4, Kellie M. Cicconi-Hogan1, J. Gregory Caporaso5 1Egg Safety and Quality Research Unit, USDA-Agricultural Research Service, 2Poultry Microbiological Safety and Processing Research Unit, USDA-Agricultural Research Service, 3Department of Biochemistry and Biophysics, Oregon State University, 4College of Public Health, University of Georgia, 5Department of Biological Sciences, Center for Microbial Genetics and Genomics, Northern Arizona University Biology
家禽生産のサンプルからの細菌群集の定性的および定量的評価のためのハイブリッドDNA抽出法 Michael J. Rothrock Jr.1, Kelli L. Hiett2, John Gamble3, Andrew C. Caudill4, Kellie M. Cicconi-Hogan1, J. Gregory Caporaso5 1Egg Safety and Quality Research Unit, USDA-Agricultural Research Service, 2Poultry Microbiological Safety and Processing Research Unit, USDA-Agricultural Research Service, 3Department of Biochemistry and Biophysics, Oregon State University, 4College of Public Health, University of Georgia, 5Department of Biological Sciences, Center for Microbial Genetics and Genomics, Northern Arizona University Biology
