James A. Glazier Biocomplexity Institute Indiana University Biography Publications Institution JoVE Articles James A. Glazier has not added a biography. If you are James A. Glazier and would like to personalize this page please email our Author Liaison for assistance. Publications The 2019 Mathematical Oncology Roadmap Physical Biology. 06, 2019 | Pubmed ID: 30991381 A Simple Automated Method for Continuous Fieldwise Measurement of Microvascular Hemodynamics Microvascular Research. 05, 2019 | Pubmed ID: 30502365 Modeling of Xenobiotic Transport and Metabolism in Virtual Hepatic Lobule Models PloS One. 2018 | Pubmed ID: 30212461 Molecular Jenga: the Percolation Phase Transition (collapse) in Virus Capsids Physical Biology. 06, 2018 | Pubmed ID: 29714713 A MODELING AND SIMULATION LANGUAGE FOR BIOLOGICAL CELLS WITH COUPLED MECHANICAL AND CHEMICAL PROCESSES Symposium on Theory of Modeling & Simulation : DEVS Integrative M&S Symposium (TMS-DEVS). Symposium on Theory of Modeling and Simulation. Apr, 2017 | Pubmed ID: 29303160 A Notch Positive Feedback in the Intestinal Stem Cell Niche is Essential for Stem Cell Self-renewal Molecular Systems Biology. 04, 2017 | Pubmed ID: 28455349 Formalizing Knowledge in Multi-Scale Agent-Based Simulations Model Driven Engineering Languages and Systems : ... International Conference, MoDELS ... : Proceedings. MODELS (Conference). Oct, 2016 | Pubmed ID: 29338063 TOWARDS A MULTI-SCALE AGENT-BASED PROGRAMMING LANGUAGE METHODOLOGY Proceedings of the ... Winter Simulation Conference. Winter Simulation Conference. Dec, 2016 | Pubmed ID: 29282379 Transcriptome Analysis Reveals Manifold Mechanisms of Cyst Development in ADPKD Human Genomics. 11, 2016 | Pubmed ID: 27871310 A Computational Model of Peripheral Photocoagulation for the Prevention of Progressive Diabetic Capillary Occlusion Journal of Diabetes Research. 2016 | Pubmed ID: 27847828 A Liver-Centric Multiscale Modeling Framework for Xenobiotics PloS One. 2016 | Pubmed ID: 27636091 Filopodial-Tension Model of Convergent-Extension of Tissues PLoS Computational Biology. 06, 2016 | Pubmed ID: 27322528 Progression of Diabetic Capillary Occlusion: A Model PLoS Computational Biology. 06, 2016 | Pubmed ID: 27300722 Virtual-tissue Computer Simulations Define the Roles of Cell Adhesion and Proliferation in the Onset of Kidney Cystic Disease Molecular Biology of the Cell. 11, 2016 | Pubmed ID: 27193300 3D Simulations of Wet Foam Coarsening Evidence a Self Similar Growth Regime Colloids and Surfaces. A, Physicochemical and Engineering Aspects. May, 2015 | Pubmed ID: 27630449 LibRoadRunner: a High Performance SBML Simulation and Analysis Library Bioinformatics (Oxford, England). Oct, 2015 | Pubmed ID: 26085503 Emergent Stratification in Solid Tumors Selects for Reduced Cohesion of Tumor Cells: A Multi-Cell, Virtual-Tissue Model of Tumor Evolution Using CompuCell3D PloS One. 2015 | Pubmed ID: 26083246 The Cell Behavior Ontology: Describing the Intrinsic Biological Behaviors of Real and Model Cells Seen As Active Agents Bioinformatics (Oxford, England). Aug, 2014 | Pubmed ID: 24755304 3D Quantitative Analyses of Angiogenic Sprout Growth Dynamics Developmental Dynamics : an Official Publication of the American Association of Anatomists. May, 2013 | Pubmed ID: 23417958 Label-free Microcavity Biosensors: Steps Towards Personalized Medicine Sensors (Basel, Switzerland). Dec, 2012 | Pubmed ID: 23443397 Multi-scale Modeling of Tissues Using CompuCell3D Methods in Cell Biology. 2012 | Pubmed ID: 22482955 Computer Simulations of Cell Sorting Due to Differential Adhesion PloS One. 2011 | Pubmed ID: 22028771 A Multi-cell, Multi-scale Model of Vertebrate Segmentation and Somite Formation PLoS Computational Biology. Oct, 2011 | Pubmed ID: 21998560 Computer Simulation of Cellular Patterning Within the Drosophila Pupal Eye PLoS Computational Biology. 2010 | Pubmed ID: 20617161 Front Instabilities and Invasiveness of Simulated 3D Avascular Tumors PloS One. May, 2010 | Pubmed ID: 20520818 Modeling Gastrulation in the Chick Embryo: Formation of the Primitive Streak PloS One. May, 2010 | Pubmed ID: 20485500 Microfluidic Devices Integrating Microcavity Surface-plasmon-resonance Sensors: Glucose Oxidase Binding-activity Detection Analytical Chemistry. Jan, 2010 | Pubmed ID: 19968248 A Threaded Java Concurrent Implementation of the Monte-Carlo Metropolis Ising Model International Work-Conference on the Interplay Between Natural and Artificial Computation. Jun, 2009 | Pubmed ID: 21814633 3D Multi-cell Simulation of Tumor Growth and Angiogenesis PloS One. Oct, 2009 | Pubmed ID: 19834621 Multicell Simulations of Development and Disease Using the CompuCell3D Simulation Environment Methods in Molecular Biology (Clifton, N.J.). 2009 | Pubmed ID: 19399437 Front Instabilities and Invasiveness of Simulated Avascular Tumors Bulletin of Mathematical Biology. Jul, 2009 | Pubmed ID: 19234746 Contact-inhibited Chemotaxis in De Novo and Sprouting Blood-vessel Growth PLoS Computational Biology. Sep, 2008 | Pubmed ID: 18802455 Simulation of Single-species Bacterial-biofilm Growth Using the Glazier-Graner-Hogeweg Model and the CompuCell3D Modeling Environment Mathematical Biosciences and Engineering : MBE. Apr, 2008 | Pubmed ID: 18613738 Coordinated Action of N-CAM, N-cadherin, EphA4, and EphrinB2 Translates Genetic Prepatterns into Structure During Somitogenesis in Chick Current Topics in Developmental Biology. 2008 | Pubmed ID: 18023729 From Genes to Organisms Via the Cell A Problem-Solving Environment for Multicellular Development Computing in Science & Engineering. 2007 | Pubmed ID: 19526065 Adhesion Between Cells, Diffusion of Growth Factors, and Elasticity of the AER Produce the Paddle Shape of the Chick Limb Physica A. Jan, 2007 | Pubmed ID: 18167520 A Parallel Implementation of the Cellular Potts Model for Simulation of Cell-based Morphogenesis Computer Physics Communications. Jun, 2007 | Pubmed ID: 18084624 Compact Microfluidic Structures for Generating Spatial and Temporal Gradients Analytical Chemistry. Dec, 2007 | Pubmed ID: 17999467 Dynamic Mechanisms of Blood Vessel Growth Nonlinearity. 2006 | Pubmed ID: 19526066 Viscous Instabilities in Flowing Foams: a Cellular Potts Model Approach Journal of Statistical Mechanics (Online). 2006 | Pubmed ID: 19002269 Cell Movement During Chick Primitive Streak Formation Developmental Biology. Aug, 2006 | Pubmed ID: 16725136 Cell Elongation is Key to in Silico Replication of in Vitro Vasculogenesis and Subsequent Remodeling Developmental Biology. Jan, 2006 | Pubmed ID: 16325173 Solving the Advection-diffusion Equations in Biological Contexts Using the Cellular Potts Model Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. Oct, 2005 | Pubmed ID: 16383422 Analysis of Tissue Flow Patterns During Primitive Streak Formation in the Chick Embryo Developmental Biology. Aug, 2005 | Pubmed ID: 15950214 Räumliche Temporale Analyse des feldweisen Flusses in der Mikrovaskulatur Sherry G. Clendenon1,2, Xiao Fu1,3, Robert A. Von Hoene1, Jeffrey L. Clendenon4, James P. Sluka1,2, Seth Winfree5, Henry Mang5, Michelle Martinez5, Adele Filson5, James E. Klaunig6, James A. Glazier1,2, Kenneth W. Dunn5 1Biocomplexity Institute, Indiana University, 2Department of Intelligent Systems Engineering, Indiana University, 3Department of Physics, Indiana University, 4Scientific Designs, 5Department of Medicine, Indiana University, 6School of Public Health, Indiana University JoVE 60493 Bioengineering
Räumliche Temporale Analyse des feldweisen Flusses in der Mikrovaskulatur Sherry G. Clendenon1,2, Xiao Fu1,3, Robert A. Von Hoene1, Jeffrey L. Clendenon4, James P. Sluka1,2, Seth Winfree5, Henry Mang5, Michelle Martinez5, Adele Filson5, James E. Klaunig6, James A. Glazier1,2, Kenneth W. Dunn5 1Biocomplexity Institute, Indiana University, 2Department of Intelligent Systems Engineering, Indiana University, 3Department of Physics, Indiana University, 4Scientific Designs, 5Department of Medicine, Indiana University, 6School of Public Health, Indiana University JoVE 60493 Bioengineering
