James S. Schwaber

Publications

• Single-Cell Glia and Neuron Gene Expression in the Central Amygdala in Opioid Withdrawal Suggests Inflammation With Correlated Gut Dysbiosis
  Frontiers in Neuroscience. 2019  |   Pubmed ID: 31333398
• A Data-driven Modeling Approach to Identify Disease-specific Multi-organ Networks Driving Physiological Dysregulation
  PLoS Computational Biology. Jul, 2017  |   Pubmed ID: 28732007
• Single-Cell Transcriptional Analysis Reveals Novel Neuronal Phenotypes and Interaction Networks Involved in the Central Circadian Clock
  Frontiers in Neuroscience. 2016  |   Pubmed ID: 27826225
• Systemic Leukotriene B Receptor Antagonism Lowers Arterial Blood Pressure and Improves Autonomic Function in the Spontaneously Hypertensive Rat
  The Journal of Physiology. 10, 2016  |   Pubmed ID: 27230966
• The Role of the Gut-brain Axis in Alcohol Use Disorders
  Progress in Neuro-psychopharmacology & Biological Psychiatry. Feb, 2016  |   Pubmed ID: 26188287
• Intracellular Information Processing Through Encoding and Decoding of Dynamic Signaling Features
  PLoS Computational Biology. Oct, 2015  |   Pubmed ID: 26491963
• Computational Modeling of Cytokine Signaling in Microglia
  Molecular BioSystems. Dec, 2015  |   Pubmed ID: 26440115
• MicroRNA Network Changes in the Brain Stem Underlie the Development of Hypertension
  Physiological Genomics. Sep, 2015  |   Pubmed ID: 26126791
• Multiscale Model of Dynamic Neuromodulation Integrating Neuropeptide-induced Signaling Pathway Activity with Membrane Electrophysiology
  Biophysical Journal. Jan, 2015  |   Pubmed ID: 25564868
• Coordinated Dynamic Gene Expression Changes in the Central Nucleus of the Amygdala During Alcohol Withdrawal
  Alcoholism, Clinical and Experimental Research. Jan, 2013  |   Pubmed ID: 22827539
• Integrative Gene Regulatory Network Analysis Reveals Light-induced Regional Gene Expression Phase Shift Programs in the Mouse Suprachiasmatic Nucleus
  PloS One. 2012  |   Pubmed ID: 22662235
• Temporal Changes in Innate Immune Signals in a Rat Model of Alcohol Withdrawal in Emotional and Cardiorespiratory Homeostatic Nuclei
  Journal of Neuroinflammation. May, 2012  |   Pubmed ID: 22626265
• Rapid Temporal Changes in the Expression of a Set of Neuromodulatory Genes During Alcohol Withdrawal in the Dorsal Vagal Complex: Molecular Evidence of Homeostatic Disturbance
  Alcoholism, Clinical and Experimental Research. Oct, 2012  |   Pubmed ID: 22486438
• Adaptive Transcriptional Dynamics of A2 Neurons and Central Cardiovascular Control Pathways
  Experimental Physiology. Apr, 2012  |   Pubmed ID: 22002872
• Robust Dynamic Balance of AP-1 Transcription Factors in a Neuronal Gene Regulatory Network
  BMC Systems Biology. Dec, 2010  |   Pubmed ID: 21167049
• A Fast Carrier Chromatin Immunoprecipitation Method Applicable to Microdissected Tissue Samples
  Journal of Neuroscience Methods. Jul, 2008  |   Pubmed ID: 18502516
• Dynamic Transcriptomic Response to Acute Hypertension in the Nucleus Tractus Solitarius
  American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. Jul, 2008  |   Pubmed ID: 18434436
• From Promoter Analysis to Transcriptional Regulatory Network Prediction Using PAINT
  Methods in Molecular Biology (Clifton, N.J.). 2007  |   Pubmed ID: 18314577
• Quantifying Gene Network Connectivity in Silico: Scalability and Accuracy of a Modular Approach
  Systems Biology. Jul, 2006  |   Pubmed ID: 16986625
• Epidermal Growth Factor Receptor-induced Circadian-time-dependent Gene Regulation in Suprachiasmatic Nucleus
  Neuroreport. Sep, 2006  |   Pubmed ID: 16932154
• Systems Analysis of Circadian Time-dependent Neuronal Epidermal Growth Factor Receptor Signaling
  Genome Biology. 2006  |   Pubmed ID: 16784547
• A Universal Reference Sample Derived from Clone Vector for Improved Detection of Differential Gene Expression
  BMC Genomics. May, 2006  |   Pubmed ID: 16677381
• Chronic Alcohol Exposure Alters Transcription Broadly in a Key Integrative Brain Nucleus for Homeostasis: the Nucleus Tractus Solitarius
  Physiological Genomics. Dec, 2005  |   Pubmed ID: 16189278
• Importance of Input Perturbations and Stochastic Gene Expression in the Reverse Engineering of Genetic Regulatory Networks: Insights from an Identifiability Analysis of an in Silico Network
  Genome Research. Nov, 2003  |   Pubmed ID: 14597654
• PAINT: a Promoter Analysis and Interaction Network Generation Tool for Gene Regulatory Network Identification
  Omics : a Journal of Integrative Biology. 2003  |   Pubmed ID: 14583114