Jerry L. Prince Department of Electrical and Computer Engineering The Johns Hopkins University Biography Publications Institution JoVE Articles Jerry L. Prince has not added a biography. If you are Jerry L. Prince and would like to personalize this page please email our Author Liaison for assistance. Publications Accurate Estimation of Total Intracranial Volume in MRI Using a Multi-tasked Image-to-Image Translation Network Proceedings of SPIE--the International Society for Optical Engineering. Feb, 2021 | Pubmed ID: 34548736 Unsupervised MR Harmonization by Learning Disentangled Representations Using Information Bottleneck Theory NeuroImage. 11, 2021 | Pubmed ID: 34506916 Autoencoder Based Self-supervised Test-time Adaptation for Medical Image Analysis Medical Image Analysis. 08, 2021 | Pubmed ID: 34246070 Structured Layer Surface Segmentation for Retina OCT Using Fully Convolutional Regression Networks Medical Image Analysis. 02, 2021 | Pubmed ID: 33260113 Longitudinal Analysis of Regional Cerebellum Volumes During Normal Aging NeuroImage. 10, 2020 | Pubmed ID: 32592850 Automatic Cerebellum Anatomical Parcellation Using U-Net with Locally Constrained Optimization NeuroImage. 09, 2020 | Pubmed ID: 32438049 Evaluating White Matter Lesion Segmentations with Refined Sørensen-Dice Analysis Scientific Reports. 05, 2020 | Pubmed ID: 32427874 Association of Body Mass Index with Longitudinal Rates of Retinal Atrophy in Multiple Sclerosis Multiple Sclerosis (Houndmills, Basingstoke, England). 06, 2020 | Pubmed ID: 32297826 Alterations in the Retinal Vasculature Occur in Multiple Sclerosis and Exhibit Novel Correlations with Disability and Visual Function Measures Multiple Sclerosis (Houndmills, Basingstoke, England). 06, 2020 | Pubmed ID: 31094280 Hierarchical Parcellation of the Cerebellum Medical Image Computing and Computer-assisted Intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Oct, 2019 | Pubmed ID: 32399521 Cerebellum Parcellation with Convolutional Neural Networks Proceedings of SPIE--the International Society for Optical Engineering. Feb, 2019 | Pubmed ID: 32394999 Fully Convolutional Boundary Regression for Retina OCT Segmentation Medical Image Computing and Computer-assisted Intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. Oct, 2019 | Pubmed ID: 31853524 Deep Learning Based Topology Guaranteed Surface and MME Segmentation of Multiple Sclerosis Subjects from Retinal OCT Biomedical Optics Express. Oct, 2019 | Pubmed ID: 31646029 DeepHarmony: A Deep Learning Approach to Contrast Harmonization Across Scanner Changes Magnetic Resonance Imaging. 12, 2019 | Pubmed ID: 31301354 Brain Ventricle Parcellation Using a Deep Neural Network: Application to Patients with Ventriculomegaly NeuroImage. Clinical. 2019 | Pubmed ID: 31174103 Layer Boundary Evolution Method for Macular OCT Layer Segmentation Biomedical Optics Express. Mar, 2019 | Pubmed ID: 30891330 Retinal Layer Parcellation of Optical Coherence Tomography Images: Data Resource for Multiple Sclerosis and Healthy Controls Data in Brief. Feb, 2019 | Pubmed ID: 30671506 Multi-atlas Segmentation of the Hydrocephalus Brain Using an Adaptive Ventricle Atlas Proceedings of SPIE--the International Society for Optical Engineering. Feb, 2018 | Pubmed ID: 34376903 Shortcomings of Ventricle Segmentation Using Deep Convolutional Networks Understanding and Interpreting Machine Learning in Medical Image Computing Applications : First International Workshops, MLCN 2018, DLF 2018, and IMIMIC 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16-20, 2018 :.... Sep, 2018 | Pubmed ID: 33094293 Multi-layer Fast Level Set Segmentation for Macular OCT Proceedings. IEEE International Symposium on Biomedical Imaging. Apr, 2018 | Pubmed ID: 31853331 Comparing Fully Automated State-of-the-art Cerebellum Parcellation from Magnetic Resonance Images NeuroImage. 12, 2018 | Pubmed ID: 30099076 State-of-the-Art Digital Imaging in Dentistry: Advanced Research of MRI, CT, CBCT, and Digital Intraoral Imaging BioMed Research International. 2018 | Pubmed ID: 29854807 Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation Brainlesion : Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries. BrainLes (Workshop). 2018 | Pubmed ID: 29714358 Intensity Inhomogeneity Correction of SD-OCT Data Using Macular Flatspace Medical Image Analysis. Jan, 2018 | Pubmed ID: 29040910 Towards Topological Correct Segmentation of Macular OCT from Cascaded FCNs Fetal, Infant and Ophthalmic Medical Image Analysis : International Workshop, FIFI 2017 and 4th International Workshop, OMIA 2017, Held in Conjunction with MICCAI 2017, Quebec City, QC, Canada, September 14, 2017. FIFI (Workshop) (2017 .... Sep, 2017 | Pubmed ID: 31355372 A Supervoxel Based Random Forest Synthesis Framework for Bidirectional MR/CT Synthesis Simulation and Synthesis in Medical Imaging : ... International Workshop, SASHIMI ..., Held in Conjunction with MICCAI ..., Proceedings. SASHIMI (Workshop). 09, 2017 | Pubmed ID: 30221260 Whole Brain Parcellation with Pathology: Validation on Ventriculomegaly Patients Patch-based Techniques in Medical Imaging : Third International Workshop, Patch-MI 2017, Held in Conjunction with MICCAI 2017, Quebec City, QC, Canada, September 14, 2017, Proceedings. Patch-MI (Workshop) (3rd : 2017 : Quebec, Quebec). Sep, 2017 | Pubmed ID: 29459902 Efficient Multi-Atlas Registration Using an Intermediate Template Image Proceedings of SPIE--the International Society for Optical Engineering. Feb, 2017 | Pubmed ID: 28943702 Collaborative SDOCT Segmentation and Analysis Software Proceedings of SPIE--the International Society for Optical Engineering. Feb, 2017 | Pubmed ID: 28919660 Automated Segmentation of Mouse OCT Volumes (ASiMOV): Validation & Clinical Study of a Light Damage Model PloS One. 2017 | Pubmed ID: 28817571 Improving Graph-based OCT Segmentation for Severe Pathology in Retinitis Pigmentosa Patients Proceedings of SPIE--the International Society for Optical Engineering. Feb, 2017 | Pubmed ID: 28781413 Thalamus Segmentation Using Multi-modal Feature Classification: Validation and Pilot Study of an Age-matched Cohort NeuroImage. 09, 2017 | Pubmed ID: 28669906 Longitudinal Multiple Sclerosis Lesion Segmentation Data Resource Data in Brief. Jun, 2017 | Pubmed ID: 28491937 Longitudinal Multiple Sclerosis Lesion Segmentation: Resource and Challenge NeuroImage. Jan, 2017 | Pubmed ID: 28087490 Cross Contrast Multi-channel Image Registration Using Image Synthesis for MR Brain Images Medical Image Analysis. 02, 2017 | Pubmed ID: 27816859 Random Forest Regression for Magnetic Resonance Image Synthesis Medical Image Analysis. 01, 2017 | Pubmed ID: 27607469 A Toolbox to Visually Explore Cerebellar Shape Changes in Cerebellar Disease and Dysfunction Proceedings of SPIE--the International Society for Optical Engineering. Feb, 2016 | Pubmed ID: 28479655 Effects of Spatial Resolution on Image Registration Proceedings of SPIE--the International Society for Optical Engineering. Feb, 2016 | Pubmed ID: 27773960 INTENSITY INHOMOGENEITY CORRECTION OF MACULAR OCT USING N3 AND RETINAL FLATSPACE Proceedings. IEEE International Symposium on Biomedical Imaging. Apr, 2016 | Pubmed ID: 27695603 Combined Registration and Motion Correction of Longitudinal Retinal OCT Data Proceedings of SPIE--the International Society for Optical Engineering. Feb, 2016 | Pubmed ID: 27231406 Simultaneous Segmentation of Retinal Surfaces and Microcystic Macular Edema in SDOCT Volumes Proceedings of SPIE--the International Society for Optical Engineering. Feb, 2016 | Pubmed ID: 27199502 Segmentation and Labeling of the Ventricular System in Normal Pressure Hydrocephalus Using Patch-based Tissue Classification and Multi-atlas Labeling Proceedings of SPIE--the International Society for Optical Engineering. Mar, 2016 | Pubmed ID: 27199501 Realistic Analytical Polyhedral MRI Phantoms Magnetic Resonance in Medicine. 08, 2016 | Pubmed ID: 26479724 Automated Cerebellar Lobule Segmentation with Application to Cerebellar Structural Analysis in Cerebellar Disease NeuroImage. Feb, 2016 | Pubmed ID: 26408861 Multi-Output Decision Trees for Lesion Segmentation in Multiple Sclerosis Proceedings of SPIE--the International Society for Optical Engineering. Feb, 2015 | Pubmed ID: 27695155 Longitudinal Patch-Based Segmentation of Multiple Sclerosis White Matter Lesions Machine Learning in Medical Imaging. MLMI (Workshop). Oct, 2015 | Pubmed ID: 27570846 Subject-Specific Sparse Dictionary Learning for Atlas-Based Brain MRI Segmentation IEEE Journal of Biomedical and Health Informatics. Sep, 2015 | Pubmed ID: 26340685 Using Image Synthesis for Multi-channel Registration of Different Image Modalities Proceedings of SPIE--the International Society for Optical Engineering. Feb, 2015 | Pubmed ID: 26246653 Tree-Encoded Conditional Random Fields for Image Synthesis Information Processing in Medical Imaging : Proceedings of the ... Conference. 2015 | Pubmed ID: 26221716 MR Image Synthesis by Contrast Learning on Neighborhood Ensembles Medical Image Analysis. Aug, 2015 | Pubmed ID: 26072167 Segmentation of Microcystic Macular Edema in Cirrus OCT Scans with an Exploratory Longitudinal Study Proceedings of SPIE--the International Society for Optical Engineering. 2015 | Pubmed ID: 26023249 Longitudinal Graph-based Segmentation of Macular OCT Using Fundus Alignment Proceedings of SPIE--the International Society for Optical Engineering. 2015 | Pubmed ID: 26023248 Automatic Segmentation of Microcystic Macular Edema in OCT Biomedical Optics Express. Jan, 2015 | Pubmed ID: 25657884 An Adaptive Grid for Graph-based Segmentation in Retinal OCT Proceedings of SPIE--the International Society for Optical Engineering. 2014 | Pubmed ID: 27773959 RANDOM FOREST FLAIR RECONSTRUCTION FROM , , AND -WEIGHTED MRI Proceedings. IEEE International Symposium on Biomedical Imaging. May, 2014 | Pubmed ID: 25405002 IMPROVING MAGNETIC RESONANCE RESOLUTION WITH SUPERVISED LEARNING Proceedings. IEEE International Symposium on Biomedical Imaging. 2014 | Pubmed ID: 25405001 Automatic Method for Thalamus Parcellation Using Multi-modal Feature Classification Medical Image Computing and Computer-assisted Intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2014 | Pubmed ID: 25320796 Semi-automatic Segmentation for 3D Motion Analysis of the Tongue with Dynamic MRI Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. Dec, 2014 | Pubmed ID: 25155697 Analysis of Macular OCT Images Using Deformable Registration Biomedical Optics Express. Jul, 2014 | Pubmed ID: 25071959 MR to CT Registration of Brains Using Image Synthesis Proceedings of SPIE--the International Society for Optical Engineering. Mar, 2014 | Pubmed ID: 25057341 Multiple-object Geometric Deformable Model for Segmentation of Macular OCT Biomedical Optics Express. Apr, 2014 | Pubmed ID: 24761289 LONGITUDINAL INTENSITY NORMALIZATION IN THE PRESENCE OF MULTIPLE SCLEROSIS LESIONS Proceedings. IEEE International Symposium on Biomedical Imaging. 2013 | Pubmed ID: 24816891 DEFORMABLE REGISTRATION OF MACULAR OCT USING A-MODE SCAN SIMILARITY Proceedings / IEEE International Symposium on Biomedical Imaging: from Nano to Macro. IEEE International Symposium on Biomedical Imaging. Dec, 2013 | Pubmed ID: 24443687 MAGNETIC RESONANCE IMAGE SYNTHESIS THROUGH PATCH REGRESSION Proceedings. IEEE International Symposium on Biomedical Imaging. Dec, 2013 | Pubmed ID: 24443686 PATCH BASED INTENSITY NORMALIZATION OF BRAIN MR IMAGES Proceedings. IEEE International Symposium on Biomedical Imaging. Dec, 2013 | Pubmed ID: 24443685 Pulse Sequence Based Multi-acquisition MR Intensity Normalization Proceedings of SPIE--the International Society for Optical Engineering. Mar, 2013 | Pubmed ID: 24386545 Longitudinal Intensity Normalization of Magnetic Resonance Images Using Patches Proceedings of SPIE--the International Society for Optical Engineering. Mar, 2013 | Pubmed ID: 24382991 COVARIANCE SHRINKING IN ACTIVE SHAPE MODELS WITH APPLICATION TO GYRAL LABELING OF THE CEREBRAL CORTEX Proceedings. IEEE International Symposium on Biomedical Imaging. 2013 | Pubmed ID: 24301715 AUTOMATED ANATOMICAL LABELING OF THE CEREBRAL ARTERIES USING BELIEF PROPAGATION Proceedings of SPIE--the International Society for Optical Engineering. Mar, 2013 | Pubmed ID: 24236229 THALAMIC PARCELLATION FROM MULTI-MODAL DATA USING RANDOM FOREST LEARNING Proceedings. IEEE International Symposium on Biomedical Imaging. 2013 | Pubmed ID: 24145869 Automatic Magnetic Resonance Spinal Cord Segmentation with Topology Constraints for Variable Fields of View NeuroImage. Aug, 2013 | Pubmed ID: 23927903 Retinal Layer Segmentation of Macular OCT Images Using Boundary Classification Biomedical Optics Express. Jul, 2013 | Pubmed ID: 23847738 Segmentation of Retinal OCT Images Using a Random Forest Classifier Proceedings of SPIE--the International Society for Optical Engineering. Mar, 2013 | Pubmed ID: 23710325 System for Integrated Neuroimaging Analysis and Processing of Structure Neuroinformatics. Jan, 2013 | Pubmed ID: 22932976 Principal Component Analysis of Cerebellar Shape on MRI Separates SCA Types 2 and 6 into Two Archetypal Modes of Degeneration Cerebellum (London, England). Dec, 2012 | Pubmed ID: 22258915 Resolution of Crossing Fibers with Constrained Compressed Sensing Using Diffusion Tensor MRI NeuroImage. Feb, 2012 | Pubmed ID: 22019877 MRI Shows a Region-specific Pattern of Atrophy in Spinocerebellar Ataxia Type 2 Cerebellum (London, England). Mar, 2012 | Pubmed ID: 21850525 Intensity Inhomogeneity Correction of Magnetic Resonance Images Using Patches Proceedings of SPIE--the International Society for Optical Engineering. Mar, 2011 | Pubmed ID: 25077011 COMPRESSED SENSING BASED INTENSITY NON-UNIFORMITY CORRECTION Proceedings. IEEE International Symposium on Biomedical Imaging. Dec, 2011 | Pubmed ID: 24443667 Distance Transforms in Multi Channel MR Image Registration Proceedings of SPIE--the International Society for Optical Engineering. Mar, 2011 | Pubmed ID: 23503332 Simple Paradigm for Extra-cerebral Tissue Removal: Algorithm and Analysis NeuroImage. Jun, 2011 | Pubmed ID: 21458576 Multi-parametric Neuroimaging Reproducibility: a 3-T Resource Study NeuroImage. Feb, 2011 | Pubmed ID: 21094686 Hybrid Cone-beam Tomographic Reconstruction: Incorporation of Prior Anatomical Models to Compensate for Missing Data IEEE Transactions on Medical Imaging. Jan, 2011 | Pubmed ID: 20667807 MR CONTRAST SYNTHESIS FOR LESION SEGMENTATION Proceedings. IEEE International Symposium on Biomedical Imaging. Jun, 2010 | Pubmed ID: 21132059 Longitudinal Changes in Cortical Thickness Associated with Normal Aging NeuroImage. Oct, 2010 | Pubmed ID: 20441796 Synthesizing MR Contrast and Resolution Through a Patch Matching Technique Proceedings of SPIE--the International Society for Optical Engineering. 2010 | Pubmed ID: 20431709 Diffusion Tensor Imaging Reveals Disease-specific Deep Cerebellar Nuclear Changes in Cerebellar Degeneration Journal of Neurology. Aug, 2010 | Pubmed ID: 20354716 Robust Deformable Image Registration Using Prior Shape Information for Atlas to Patient Registration Computerized Medical Imaging and Graphics : the Official Journal of the Computerized Medical Imaging Society. Jan, 2010 | Pubmed ID: 19515532 Enhancement of Mobile C-arm Cone-beam Reconstruction Using Prior Anatomical Models Proceedings of SPIE--the International Society for Optical Engineering. 2009 | Pubmed ID: 22190841 A RICIAN MIXTURE MODEL CLASSIFICATION ALGORITHM FOR MAGNETIC RESONANCE IMAGES Proceedings. IEEE International Symposium on Biomedical Imaging. 2009 | Pubmed ID: 20126426 Mjolnir: Extending HAMMER Using a Diffusion Transformation Model and Histogram Equalization for Deformable Image Registration International Journal of Biomedical Imaging. 2009 | Pubmed ID: 19680457 Effect of Oral Appliances on Genioglossus Muscle Tonicity Seen with Diffusion Tensor Imaging: a Pilot Study Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontics. Mar, 2009 | Pubmed ID: 19217012 AUTOMATED RELIABLE LABELING OF THE CORTICAL SURFACE Proceedings. IEEE International Symposium on Biomedical Imaging. May, 2008 | Pubmed ID: 21197379 FUZZY C-MEANS WITH VARIABLE COMPACTNESS Proceedings. IEEE International Symposium on Biomedical Imaging. 2008 | Pubmed ID: 20126427 AUTOMATICALLY IDENTIFYING WHITE MATTER TRACTS USING CORTICAL LABELS Proceedings. IEEE International Symposium on Biomedical Imaging. May, 2008 | Pubmed ID: 20119500 Diffusion Tensor Imaging at Low SNR: Nonmonotonic Behaviors of Tensor Contrasts Magnetic Resonance Imaging. Jul, 2008 | Pubmed ID: 18499378 Effects of Signal-to-noise Ratio on the Accuracy and Reproducibility of Diffusion Tensor Imaging-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5 T Journal of Magnetic Resonance Imaging : JMRI. Sep, 2007 | Pubmed ID: 17729339 Effects of Diffusion Weighting Schemes on the Reproducibility of DTI-derived Fractional Anisotropy, Mean Diffusivity, and Principal Eigenvector Measurements at 1.5T NeuroImage. Jul, 2007 | Pubmed ID: 17532649 Measuring Tongue Motion from Tagged Cine-MRI Using Harmonic Phase (HARP) Processing The Journal of the Acoustical Society of America. Jan, 2007 | Pubmed ID: 17297803 Cortical Reconstruction Using Implicit Surface Evolution: Accuracy and Precision Analysis NeuroImage. Feb, 2006 | Pubmed ID: 16269250 Cardiac Motion Tracking Using CINE Harmonic Phase (HARP) Magnetic Resonance Imaging Magnetic Resonance in Medicine. Dec, 1999 | Pubmed ID: 10571926 A Standardized Pipeline for Examining Human Cerebellar Grey Matter Morphometry using Structural Magnetic Resonance Imaging Rebecca Kerestes1, Shuo Han2, Srinivas Balachander3, Carlos Hernandez-Castillo4, Jerry L. Prince5,6, Jörn Diedrichsen7, Ian H. Harding1,8 1Department of Neuroscience, Central Clinical School, Monash University, 2Department of Biomedical Engineering, The Johns Hopkins University, 3Department of Psychiatry, National Institute of Mental Health & Neuro Sciences (NIMHANS), 4Faculty of Computer Science, Dalhousie University, 5Department of Electrical and Computer Engineering, The Johns Hopkins University, 6Department of Computer Science, The Johns Hopkins University, 7Brain and Mind Institute, Department for Statistical and Actuarial Sciences, Department for Computer Science, Western University, 8Monash Biomedical Imaging, Monash University JoVE 63340 Neuroscience
A Standardized Pipeline for Examining Human Cerebellar Grey Matter Morphometry using Structural Magnetic Resonance Imaging Rebecca Kerestes1, Shuo Han2, Srinivas Balachander3, Carlos Hernandez-Castillo4, Jerry L. Prince5,6, Jörn Diedrichsen7, Ian H. Harding1,8 1Department of Neuroscience, Central Clinical School, Monash University, 2Department of Biomedical Engineering, The Johns Hopkins University, 3Department of Psychiatry, National Institute of Mental Health & Neuro Sciences (NIMHANS), 4Faculty of Computer Science, Dalhousie University, 5Department of Electrical and Computer Engineering, The Johns Hopkins University, 6Department of Computer Science, The Johns Hopkins University, 7Brain and Mind Institute, Department for Statistical and Actuarial Sciences, Department for Computer Science, Western University, 8Monash Biomedical Imaging, Monash University JoVE 63340 Neuroscience
