Joseph L. DeRisi

Publications

• The 3A Protein from Multiple Picornaviruses Utilizes the Golgi Adaptor Protein ACBD3 to Recruit PI4KIIIβ
  Journal of Virology. Jan, 2012  |   Pubmed ID: 22258260
• Plate-based Transfection and Culturing Technique for Genetic Manipulation of Plasmodium Falciparum
  Malaria Journal. Jan, 2012  |   Pubmed ID: 22257490
• ReCombine: a Suite of Programs for Detection and Analysis of Meiotic Recombination in Whole-genome Datasets
  PloS One. 2011  |   Pubmed ID: 22046241
• Optimization of Propafenone Analogues As Antimalarial Leads
  Journal of Medicinal Chemistry. Nov, 2011  |   Pubmed ID: 21955244
• Assemblathon 1: a Competitive Assessment of De Novo Short Read Assembly Methods
  Genome Research. Dec, 2011  |   Pubmed ID: 21926179
• Chemical Rescue of Malaria Parasites Lacking an Apicoplast Defines Organelle Function in Blood-stage Plasmodium Falciparum
  PLoS Biology. Aug, 2011  |   Pubmed ID: 21912516
• Synthesis and Evaluation of 7-substituted 4-aminoquinoline Analogues for Antimalarial Activity
  Journal of Medicinal Chemistry. Oct, 2011  |   Pubmed ID: 21910466
• Validation of a Diagnostic Microarray for Human Papillomavirus: Coverage of 102 Genotypes
  Journal of Nucleic Acids. 2011  |   Pubmed ID: 21785699
• Temporal Analysis of the Honey Bee Microbiome Reveals Four Novel Viruses and Seasonal Prevalence of Known Viruses, Nosema, and Crithidia
  PloS One. 2011  |   Pubmed ID: 21687739
• Transcriptome Sequencing Demonstrates That Human Papillomavirus is Not Active in Cutaneous Squamous Cell Carcinoma
  The Journal of Investigative Dermatology. Aug, 2011  |   Pubmed ID: 21490616
• NK Cells and Immune "memory"
  Journal of Immunology (Baltimore, Md. : 1950). Feb, 2011  |   Pubmed ID: 21289313
• RNA-Seq Analysis of Splicing in Plasmodium Falciparum Uncovers New Splice Junctions, Alternative Splicing and Splicing of Antisense Transcripts
  Nucleic Acids Research. May, 2011  |   Pubmed ID: 21245033
• Evaluation of Diarylureas for Activity Against Plasmodium Falciparum
  ACS Medicinal Chemistry Letters. Dec, 2010  |   Pubmed ID: 21243104
• HMMSplicer: a Tool for Efficient and Sensitive Discovery of Known and Novel Splice Junctions in RNA-Seq Data
  PloS One. 2010  |   Pubmed ID: 21079731
• De Novo Identification and Biophysical Characterization of Transcription-factor Binding Sites with Microfluidic Affinity Analysis
  Nature Biotechnology. Sep, 2010  |   Pubmed ID: 20802496
• Serological Evidence of Human Klassevirus Infection
  Clinical and Vaccine Immunology : CVI. Oct, 2010  |   Pubmed ID: 20739504
• Avian Bornavirus is Present in Many Tissues of Psittacine Birds with Histopathologic Evidence of Proventricular Dilatation Disease
  Journal of Veterinary Diagnostic Investigation : Official Publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. Jul, 2010  |   Pubmed ID: 20622218
• Human Enterovirus 109: a Novel Interspecies Recombinant Enterovirus Isolated from a Case of Acute Pediatric Respiratory Illness in Nicaragua
  Journal of Virology. Sep, 2010  |   Pubmed ID: 20592079
• Chemical Genetics of Plasmodium Falciparum
  Nature. May, 2010  |   Pubmed ID: 20485428
• Development of a New Generation of 4-aminoquinoline Antimalarial Compounds Using Predictive Pharmacokinetic and Toxicology Models
  Journal of Medicinal Chemistry. May, 2010  |   Pubmed ID: 20361799
• VersaCount: Customizable Manual Tally Software for Cell Counting
  Source Code for Biology and Medicine. 2010  |   Pubmed ID: 20180957
• Improved Methods for Magnetic Purification of Malaria Parasites and Haemozoin
  Malaria Journal. 2010  |   Pubmed ID: 20074366
• Analysis of Naturally Occurring Avian Bornavirus Infection and Transmission During an Outbreak of Proventricular Dilatation Disease Among Captive Psittacine Birds
  Journal of Virology. Feb, 2010  |   Pubmed ID: 19955301
• An Enhanced Single Base Extension Technique for the Analysis of Complex Viral Populations
  PloS One. 2009  |   Pubmed ID: 19834618
• Antiparasitic Activities of Novel, Orally Available Fumagillin Analogs
  Bioorganic & Medicinal Chemistry Letters. Sep, 2009  |   Pubmed ID: 19648008
• Inhibiting Plasmodium Falciparum Growth and Heme Detoxification Pathway Using Heme-binding DNA Aptamers
  Proceedings of the National Academy of Sciences of the United States of America. Aug, 2009  |   Pubmed ID: 19633187
• Experimental Induction of Proventricular Dilatation Disease in Cockatiels (Nymphicus Hollandicus) Inoculated with Brain Homogenates Containing Avian Bornavirus 4
  Virology Journal. 2009  |   Pubmed ID: 19589169
• The Complete Genome of Klassevirus - a Novel Picornavirus in Pediatric Stool
  Virology Journal. 2009  |   Pubmed ID: 19538752
• The Long March: a Sample Preparation Technique That Enhances Contig Length and Coverage by High-throughput Short-read Sequencing
  PloS One. 2008  |   Pubmed ID: 18941527
• Experimental Malaria Infection Triggers Early Expansion of Natural Killer Cells
  Infection and Immunity. Dec, 2008  |   Pubmed ID: 18824529
• Identification of Cardioviruses Related to Theiler's Murine Encephalomyelitis Virus in Human Infections
  Proceedings of the National Academy of Sciences of the United States of America. Sep, 2008  |   Pubmed ID: 18768820
• Recovery of Divergent Avian Bornaviruses from Cases of Proventricular Dilatation Disease: Identification of a Candidate Etiologic Agent
  Virology Journal. 2008  |   Pubmed ID: 18671869
• Utility of DNA Microarrays for Detection of Viruses in Acute Respiratory Tract Infections in Children
  The Journal of Pediatrics. Jul, 2008  |   Pubmed ID: 18571541
• N-terminal Processing of Proteins Exported by Malaria Parasites
  Molecular and Biochemical Parasitology. Aug, 2008  |   Pubmed ID: 18534695
• Pan-viral Screening of Respiratory Tract Infections in Adults with and Without Asthma Reveals Unexpected Human Coronavirus and Human Rhinovirus Diversity
  The Journal of Infectious Diseases. Sep, 2007  |   Pubmed ID: 17703411
• Whole-genome Analysis of MRNA Decay in Plasmodium Falciparum Reveals a Global Lengthening of MRNA Half-life During the Intra-erythrocytic Development Cycle
  Genome Biology. 2007  |   Pubmed ID: 17612404
• Diagnosis of a Critical Respiratory Illness Caused by Human Metapneumovirus by Use of a Pan-virus Microarray
  Journal of Clinical Microbiology. Jul, 2007  |   Pubmed ID: 17494722
• Genome-wide Diversity and Selective Pressure in the Human Rhinovirus
  Virology Journal. 2007  |   Pubmed ID: 17477878
• Cis-acting Determinants of Asymmetric, Cytoplasmic RNA Transport
  RNA (New York, N.Y.). May, 2007  |   Pubmed ID: 17449729
• An Infectious Retrovirus Susceptible to an IFN Antiviral Pathway from Human Prostate Tumors
  Proceedings of the National Academy of Sciences of the United States of America. Jan, 2007  |   Pubmed ID: 17234809
• Rapid DNA Mapping by Fluorescent Single Molecule Detection
  Nucleic Acids Research. 2007  |   Pubmed ID: 17175538
• Microarray Detection of Human Parainfluenzavirus 4 Infection Associated with Respiratory Failure in an Immunocompetent Adult
  Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America. Oct, 2006  |   Pubmed ID: 16983602
• Tetracyclines Specifically Target the Apicoplast of the Malaria Parasite Plasmodium Falciparum
  Antimicrobial Agents and Chemotherapy. Sep, 2006  |   Pubmed ID: 16940111
• Searching for New Antimalarial Therapeutics Amongst Known Drugs
  Chemical Biology & Drug Design. Jun, 2006  |   Pubmed ID: 16882315
• Incorporation of an Intramolecular Hydrogen-bonding Motif in the Side Chain of 4-aminoquinolines Enhances Activity Against Drug-resistant P. Falciparum
  Journal of Medicinal Chemistry. Jul, 2006  |   Pubmed ID: 16854059
• Single-cell Proteomic Analysis of S. Cerevisiae Reveals the Architecture of Biological Noise
  Nature. Jun, 2006  |   Pubmed ID: 16699522
• Identification of a Novel Gammaretrovirus in Prostate Tumors of Patients Homozygous for R462Q RNASEL Variant
  PLoS Pathogens. Mar, 2006  |   Pubmed ID: 16609730
• Comparative Whole Genome Transcriptome Analysis of Three Plasmodium Falciparum Strains
  Nucleic Acids Research. 2006  |   Pubmed ID: 16493140
• Genome-wide Mapping of DNA Synthesis in Saccharomyces Cerevisiae Reveals That Mechanisms Preventing Reinitiation of DNA Replication Are Not Redundant
  Molecular Biology of the Cell. May, 2006  |   Pubmed ID: 16481397
• Parallel Synthesis of 9-aminoacridines and Their Evaluation Against Chloroquine-resistant Plasmodium Falciparum
  Bioorganic & Medicinal Chemistry. Jan, 2006  |   Pubmed ID: 16216519
• Unbiased Selection of Localization Elements Reveals Cis-acting Determinants of MRNA Bud Localization in Saccharomyces Cerevisiae
  Proceedings of the National Academy of Sciences of the United States of America. Dec, 2005  |   Pubmed ID: 16326802
• E-Predict: a Computational Strategy for Species Identification Based on Observed DNA Microarray Hybridization Patterns
  Genome Biology. 2005  |   Pubmed ID: 16168085
• Genome-wide Identification of Genes Upregulated at the Onset of Gametocytogenesis in Plasmodium Falciparum
  Molecular and Biochemical Parasitology. Sep, 2005  |   Pubmed ID: 16026866
• Synthesis of Ring-substituted 4-aminoquinolines and Evaluation of Their Antimalarial Activities
  Bioorganic & Medicinal Chemistry Letters. Feb, 2005  |   Pubmed ID: 15686903
• Genomic Dissection of the Cell-type-specification Circuit in Saccharomyces Cerevisiae
  Proceedings of the National Academy of Sciences of the United States of America. Dec, 2004  |   Pubmed ID: 15604142
• Pernicious Plans Revealed: Plasmodium Falciparum Genome Wide Expression Analysis
  Current Opinion in Microbiology. Aug, 2004  |   Pubmed ID: 15358256
• Genome-wide Mapping of the Cohesin Complex in the Yeast Saccharomyces Cerevisiae
  PLoS Biology. Sep, 2004  |   Pubmed ID: 15309048
• The Kinetochore is an Enhancer of Pericentric Cohesin Binding
  PLoS Biology. Sep, 2004  |   Pubmed ID: 15309047
• Parallel Synthesis and Antimalarial Screening of a 4-aminoquinoline Library
  Journal of Combinatorial Chemistry. May-Jun, 2004  |   Pubmed ID: 15132606
• Viral Discovery and Sequence Recovery Using DNA Microarrays
  PLoS Biology. Nov, 2003  |   Pubmed ID: 14624234
• The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium Falciparum
  PLoS Biology. Oct, 2003  |   Pubmed ID: 12929205
• Characterization of a Novel Coronavirus Associated with Severe Acute Respiratory Syndrome
  Science (New York, N.Y.). May, 2003  |   Pubmed ID: 12730500
• Expression Profiling of the Schizont and Trophozoite Stages of Plasmodium Falciparum with a Long-oligonucleotide Microarray
  Genome Biology. 2003  |   Pubmed ID: 12620119
• Microarray-based Detection and Genotyping of Viral Pathogens
  Proceedings of the National Academy of Sciences of the United States of America. Nov, 2002  |   Pubmed ID: 12429852
• The Genome-wide Expression Response to Telomerase Deletion in Saccharomyces Cerevisiae
  Proceedings of the National Academy of Sciences of the United States of America. Jul, 2002  |   Pubmed ID: 12084816
• Mnd1p: an Evolutionarily Conserved Protein Required for Meiotic Recombination
  Proceedings of the National Academy of Sciences of the United States of America. May, 2002  |   Pubmed ID: 12011448
• DNA Microarrays for Malaria
  Trends in Parasitology. Jan, 2002  |   Pubmed ID: 11850013