Matthias Wolf Department of Bioinformatics, Biocenter University of Würzburg Biography Publications Institution JoVE Articles Matthias Wolf has not added a biography. If you are Matthias Wolf and would like to personalize this page please email our Author Liaison for assistance. Publications ITS2 Database IV: Interactive Taxon Sampling for Internal Transcribed Spacer 2 Based Phylogenies Molecular Phylogenetics and Evolution. Feb, 2012 | Pubmed ID: 22366368 Phylogeny of Oedogoniales, Chaetophorales and Chaetopeltidales (Chlorophyceae): Inferences from Sequence-structure Analysis of ITS2 Annals of Botany. Jan, 2012 | Pubmed ID: 22028463 Computer-aided Detection of Colorectal Polyps in CT Colonography with and Without Fecal Tagging: a Stand-alone Evaluation Investigative Radiology. Feb, 2012 | Pubmed ID: 21934519 Robust Large Scale Prone-supine Polyp Matching Using Local Features: a Metric Learning Approach Medical Image Computing and Computer-assisted Intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2011 | Pubmed ID: 22003686 Autosomal Dominant Mutation in the Signal Peptide of Renin in a Kindred with Anemia, Hyperuricemia, and CKD American Journal of Kidney Diseases : the Official Journal of the National Kidney Foundation. Nov, 2011 | Pubmed ID: 21903317 Vibrational Mode Analysis of Isotope-labeled Electronically Excited Riboflavin The Journal of Physical Chemistry. B. Jun, 2011 | Pubmed ID: 21598977 Internal Transcribed Spacer 2 (nu ITS2 RRNA) Sequence-structure Phylogenetics: Towards an Automated Reconstruction of the Green Algal Tree of Life PloS One. 2011 | Pubmed ID: 21347329 Excited-state Dynamics of Protochlorophyllide Revealed by Subpicosecond Infrared Spectroscopy Biophysical Journal. Jan, 2011 | Pubmed ID: 21190679 Mutation Analysis of 18 Nephronophthisis Associated Ciliopathy Disease Genes Using a DNA Pooling and Next Generation Sequencing Strategy Journal of Medical Genetics. Feb, 2011 | Pubmed ID: 21068128 Nephronophthisis Pediatric Nephrology (Berlin, Germany). Feb, 2011 | Pubmed ID: 20652329 Evolutionary Distances in the Twilight Zone--a Rational Kernel Approach PloS One. 2010 | Pubmed ID: 21209825 A Molecular Phylogeny of Hypnales (Bryophyta) Inferred from ITS2 Sequence-structure Data BMC Research Notes. 2010 | Pubmed ID: 21108782 Subunit Interactions in Bovine Papillomavirus Proceedings of the National Academy of Sciences of the United States of America. Apr, 2010 | Pubmed ID: 20308582 Individuals with Mutations in XPNPEP3, Which Encodes a Mitochondrial Protein, Develop a Nephronophthisis-like Nephropathy The Journal of Clinical Investigation. Mar, 2010 | Pubmed ID: 20179356 Uromodulin is Expressed in Renal Primary Cilia and UMOD Mutations Result in Decreased Ciliary Uromodulin Expression Human Molecular Genetics. May, 2010 | Pubmed ID: 20172860 Including RNA Secondary Structures Improves Accuracy and Robustness in Reconstruction of Phylogenetic Trees Biology Direct. 2010 | Pubmed ID: 20078867 Structure of Clathrin Coat with Bound Hsc70 and Auxilin: Mechanism of Hsc70-facilitated Disassembly The EMBO Journal. Feb, 2010 | Pubmed ID: 20033059 Microevolution and Speciation in Thalassiosira Weissflogii (Bacillariophyta) Protist. Apr, 2010 | Pubmed ID: 20018562 The ITS2 Database III--sequences and Structures for Phylogeny Nucleic Acids Research. Jan, 2010 | Pubmed ID: 19920122 Compensatory Base Changes Illuminate Morphologically Difficult Taxonomy Molecular Phylogenetics and Evolution. Feb, 2010 | Pubmed ID: 19660561 Modelling Cross-hybridization on Phylogenetic DNA Microarrays Increases the Detection Power of Closely Related Species Molecular Ecology Resources. Jan, 2009 | Pubmed ID: 21564570 A Two-level Approach Towards Semantic Colon Segmentation: Removing Extra-colonic Findings Medical Image Computing and Computer-assisted Intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2009 | Pubmed ID: 20426210 ITS2 Secondary Structure Improves Phylogeny Estimation in a Radiation of Blue Butterflies of the Subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus ) BMC Evolutionary Biology. 2009 | Pubmed ID: 20035628 Primary Photoinduced Protein Response in Bacteriorhodopsin and Sensory Rhodopsin II Journal of the American Chemical Society. Oct, 2009 | Pubmed ID: 19778046 Evolutionary Diversification Indicated by Compensatory Base Changes in ITS2 Secondary Structures in a Complex Fungal Species, Rhizoctonia Solani Journal of Molecular Evolution. Aug, 2009 | Pubmed ID: 19609478 ITS2 Sequence-structure Analysis in Phylogenetics: a How-to Manual for Molecular Systematics Molecular Phylogenetics and Evolution. Aug, 2009 | Pubmed ID: 19489124 Ultrafast Protein Conformational Alterations in Bacteriorhodopsin and Its Locked Analogue BR5.12 The Journal of Physical Chemistry. B. Jun, 2009 | Pubmed ID: 19422251 A Probabilistic Model of Cell Size Reduction in Pseudo-nitzschia Delicatissima (Bacillariophyta) Journal of Theoretical Biology. May, 2009 | Pubmed ID: 19232359 A Systematic Approach to Mapping Recessive Disease Genes in Individuals from Outbred Populations PLoS Genetics. Jan, 2009 | Pubmed ID: 19165332 5.8S-28S RRNA Interaction and HMM-based ITS2 Annotation Gene. Feb, 2009 | Pubmed ID: 19026726 Mutation Analysis of the Uromodulin Gene in 96 Individuals with Urinary Tract Anomalies (CAKUT) Pediatric Nephrology (Berlin, Germany). Jan, 2009 | Pubmed ID: 18846391 Synchronous Visual Analysis and Editing of RNA Sequence and Secondary Structure Alignments Using 4SALE BMC Research Notes. 2008 | Pubmed ID: 18854023 Ultrafast Infrared Spectroscopy of Riboflavin: Dynamics, Electronic Structure, and Vibrational Mode Analysis The Journal of Physical Chemistry. B. Oct, 2008 | Pubmed ID: 18821792 ProfDistS: (profile-) Distance Based Phylogeny on Sequence--structure Alignments Bioinformatics (Oxford, England). Oct, 2008 | Pubmed ID: 18723521 ITS2 Data Corroborate a Monophyletic Chlorophycean DO-group (Sphaeropleales) BMC Evolutionary Biology. 2008 | Pubmed ID: 18655698 Sub-picosecond Time Resolved Infrared Spectroscopy of High-spin State Formation in Fe(ii) Spin Crossover Complexes Physical Chemistry Chemical Physics : PCCP. Aug, 2008 | Pubmed ID: 18633547 Computer-aided Detection of Pulmonary Embolism: Influence on Radiologists' Detection Performance with Respect to Vessel Segments European Radiology. Jul, 2008 | Pubmed ID: 18292998 Subpicosecond Midinfrared Spectroscopy of the Pfr Reaction of Phytochrome Agp1 from Agrobacterium Tumefaciens Biophysical Journal. Apr, 2008 | Pubmed ID: 18192363 Mutation Analysis in Nephronophthisis Using a Combined Approach of Homozygosity Mapping, CEL I Endonuclease Cleavage, and Direct Sequencing Human Mutation. Mar, 2008 | Pubmed ID: 18076122 The ITS2 Database II: Homology Modelling RNA Structure for Molecular Systematics Nucleic Acids Research. Jan, 2008 | Pubmed ID: 17933769 A New Method for Spherical Object Detection and Its Application to Computer Aided Detection of Pulmonary Nodules in CT Images Medical Image Computing and Computer-assisted Intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention. 2007 | Pubmed ID: 18051137 Evidence of Oligogenic Inheritance in Nephronophthisis Journal of the American Society of Nephrology : JASN. Oct, 2007 | Pubmed ID: 17855640 Calcitonin Gene-related Peptide: a Marker for Putative Primary Afferent Neurons in the Pig Small Intestinal Myenteric Plexus? Anatomical Record (Hoboken, N.J. : 2007). Oct, 2007 | Pubmed ID: 17763367 Deep Metazoan Phylogeny In Silico Biology. 2007 | Pubmed ID: 17688440 Distinguishing Species RNA (New York, N.Y.). Sep, 2007 | Pubmed ID: 17652131 The Ciliary Gene RPGRIP1L is Mutated in Cerebello-oculo-renal Syndrome (Joubert Syndrome Type B) and Meckel Syndrome Nature Genetics. Jul, 2007 | Pubmed ID: 17558409 4SALE--a Tool for Synchronous RNA Sequence and Secondary Structure Alignment and Editing BMC Bioinformatics. 2006 | Pubmed ID: 17101042 A Java Applet for Exploring the New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists The Journal of Eukaryotic Microbiology. Sep-Oct, 2006 | Pubmed ID: 16968448 The Internal Transcribed Spacer 2 Database--a Web Server for (not Only) Low Level Phylogenetic Analyses Nucleic Acids Research. Jul, 2006 | Pubmed ID: 16845103 Medullary Cystic Kidney Disease Type 1: Mutational Analysis in 37 Genes Based on Haplotype Sharing Human Genetics. Jul, 2006 | Pubmed ID: 16738948 Ewald Sphere Correction for Single-particle Electron Microscopy Ultramicroscopy. Mar, 2006 | Pubmed ID: 16384646 Homology Modeling Revealed More Than 20,000 RRNA Internal Transcribed Spacer 2 (ITS2) Secondary Structures RNA (New York, N.Y.). Nov, 2005 | Pubmed ID: 16244129 CBCAnalyzer: Inferring Phylogenies Based on Compensatory Base Changes in RNA Secondary Structures In Silico Biology. 2005 | Pubmed ID: 15996120 ITS-2 and 18S RRNA Gene Phylogeny of Aplysinidae (Verongida, Demospongiae) Journal of Molecular Evolution. Mar, 2005 | Pubmed ID: 15871043 A Common Core of Secondary Structure of the Internal Transcribed Spacer 2 (ITS2) Throughout the Eukaryota RNA (New York, N.Y.). Apr, 2005 | Pubmed ID: 15769870 Mapping a New Suggestive Gene Locus for Autosomal Dominant Nephrolithiasis to Chromosome 9q33.2-q34.2 by Total Genome Search for Linkage Nephrology, Dialysis, Transplantation : Official Publication of the European Dialysis and Transplant Association - European Renal Association. May, 2005 | Pubmed ID: 15741201 ProfDist: a Tool for the Construction of Large Phylogenetic Trees Based on Profile Distances Bioinformatics (Oxford, England). May, 2005 | Pubmed ID: 15677706 Expression and Phenotype Analysis of the Nephrocystin-1 and Nephrocystin-4 Homologs in Caenorhabditis Elegans Journal of the American Society of Nephrology : JASN. Mar, 2005 | Pubmed ID: 15659564 Medullary Cystic Kidney Disease Type 1 in a Large Native-American Kindred American Journal of Kidney Diseases : the Official Journal of the National Kidney Foundation. Oct, 2004 | Pubmed ID: 15384011 Telomeric Refinement of the MCKD1 Locus on Chromosome 1q21 Kidney International. Aug, 2004 | Pubmed ID: 15253709 Accurate and Robust Phylogeny Estimation Based on Profile Distances: a Study of the Chlorophyceae (Chlorophyta) BMC Evolutionary Biology. Jun, 2004 | Pubmed ID: 15222898 Phylogeny of Firmicutes with Special Reference to Mycoplasma (Mollicutes) As Inferred from Phosphoglycerate Kinase Amino Acid Sequence Data International Journal of Systematic and Evolutionary Microbiology. May, 2004 | Pubmed ID: 15143038 Remote Computing Environment Compensating for Brain Shift Computer Aided Surgery : Official Journal of the International Society for Computer Aided Surgery. 2003 | Pubmed ID: 15360098 Mutations of the Uromodulin Gene in MCKD Type 2 Patients Cluster in Exon 4, Which Encodes Three EGF-like Domains Kidney International. Nov, 2003 | Pubmed ID: 14531790 Refinement of the Critical Region for MCKD1 by Detection of Transcontinental Haplotype Sharing Kidney International. Sep, 2003 | Pubmed ID: 12911527 Mutations in INVS Encoding Inversin Cause Nephronophthisis Type 2, Linking Renal Cystic Disease to the Function of Primary Cilia and Left-right Axis Determination Nature Genetics. Aug, 2003 | Pubmed ID: 12872123 Mutations in a Novel Gene, NPHP3, Cause Adolescent Nephronophthisis, Tapeto-retinal Degeneration and Hepatic Fibrosis Nature Genetics. Aug, 2003 | Pubmed ID: 12872122 A Gene Locus for Steroid-resistant Nephrotic Syndrome with Deafness Maps to Chromosome 14q24.2 Journal of the American Society of Nephrology : JASN. Jun, 2003 | Pubmed ID: 12761252 Pulmonary Re-occurrence of Post-transplant Lymphoproliferative Disease with Hypogammaglobulinaemia European Journal of Pediatrics. Mar, 2003 | Pubmed ID: 12655423 Methanogenic Archaeal Community in the Sediment of an Artificially Partitioned Acidic Bog Lake FEMS Microbiology Ecology. Oct, 2002 | Pubmed ID: 19709271 A Gene Mutated in Nephronophthisis and Retinitis Pigmentosa Encodes a Novel Protein, Nephroretinin, Conserved in Evolution American Journal of Human Genetics. Nov, 2002 | Pubmed ID: 12205563 Follow-up of Five Patients with FHHNC Due to Mutations in the Paracellin-1 Gene Pediatric Nephrology (Berlin, Germany). Aug, 2002 | Pubmed ID: 12185465 The ITS2 Database Benjamin Merget1,2, Christian Koetschan1, Thomas Hackl1, Frank Förster1, Thomas Dandekar1, Tobias Müller1, Jörg Schultz1, Matthias Wolf1 1Department of Bioinformatics, Biocenter, University of Würzburg, 2Institute of Pharmacy and Food Chemistry, University of Würzburg JoVE 3806 Biology
The ITS2 Database Benjamin Merget1,2, Christian Koetschan1, Thomas Hackl1, Frank Förster1, Thomas Dandekar1, Tobias Müller1, Jörg Schultz1, Matthias Wolf1 1Department of Bioinformatics, Biocenter, University of Würzburg, 2Institute of Pharmacy and Food Chemistry, University of Würzburg JoVE 3806 Biology