Michael F Berger

Publications

• Punctuated Evolution of Prostate Cancer Genomes
  Cell. Apr, 2013  |   Pubmed ID: 23622249
• Phase II Trial of MEK Inhibitor Selumetinib (AZD6244, ARRY-142886) in Patients with BRAFV600E/K-mutated Melanoma
  Clinical Cancer Research : an Official Journal of the American Association for Cancer Research. Apr, 2013  |   Pubmed ID: 23444215
• BRAF Mutation is Associated with Early Stage Disease and Improved Outcome in Patients with Low-grade Serous Ovarian Cancer
  Cancer. Feb, 2013  |   Pubmed ID: 22930283
• Genome Sequencing Identifies a Basis for Everolimus Sensitivity
  Science (New York, N.Y.). Oct, 2012  |   Pubmed ID: 22923433
• Melanoma Genome Sequencing Reveals Frequent PREX2 Mutations
  Nature. May, 2012  |   Pubmed ID: 22622578
• High-throughput Detection of Actionable Genomic Alterations in Clinical Tumor Samples by Targeted, Massively Parallel Sequencing
  Cancer Discovery. Jan, 2012  |   Pubmed ID: 22585170
• The Cancer Cell Line Encyclopedia Enables Predictive Modelling of Anticancer Drug Sensitivity
  Nature. Mar, 2012  |   Pubmed ID: 22460905
• Molecular Mechanism Underlying the Regulatory Specificity of a Drosophila Homeodomain Protein That Specifies Myoblast Identity
  Development (Cambridge, England). Mar, 2012  |   Pubmed ID: 22296846
• The Mutational Landscape of Head and Neck Squamous Cell Carcinoma
  Science (New York, N.Y.). Aug, 2011  |   Pubmed ID: 21798893
• Dissecting Therapeutic Resistance to RAF Inhibition in Melanoma by Tumor Genomic Profiling
  Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. Aug, 2011  |   Pubmed ID: 21383288
• The Genomic Complexity of Primary Human Prostate Cancer
  Nature. Feb, 2011  |   Pubmed ID: 21307934
• Notch and MAML-1 Complexation Do Not Detectably Alter the DNA Binding Specificity of the Transcription Factor CSL
  PloS One. 2010  |   Pubmed ID: 21124806
• Objective Sequence-based Subfamily Classifications of Mouse Homeodomains Reflect Their in Vitro DNA-binding Preferences
  Nucleic Acids Research. Dec, 2010  |   Pubmed ID: 20705649
• Genome-wide Analysis of ETS-family DNA-binding in Vitro and in Vivo
  The EMBO Journal. Jul, 2010  |   Pubmed ID: 20517297
• Integrative Analysis of the Melanoma Transcriptome
  Genome Research. Apr, 2010  |   Pubmed ID: 20179022
• Conservation and Regulatory Associations of a Wide Affinity Range of Mouse Transcription Factor Binding Sites
  Genomics. Apr, 2010  |   Pubmed ID: 20079828
• Targeted Next-generation Sequencing of a Cancer Transcriptome Enhances Detection of Sequence Variants and Novel Fusion Transcripts
  Genome Biology. 2009  |   Pubmed ID: 19835606
• Applications of Genomics in Melanoma Oncogene Discovery
  Hematology/oncology Clinics of North America. Jun, 2009  |   Pubmed ID: 19464593
• Diversity and Complexity in DNA Recognition by Transcription Factors
  Science (New York, N.Y.). Jun, 2009  |   Pubmed ID: 19443739
• Universal Protein-binding Microarrays for the Comprehensive Characterization of the DNA-binding Specificities of Transcription Factors
  Nature Protocols. 2009  |   Pubmed ID: 19265799
• High-resolution DNA-binding Specificity Analysis of Yeast Transcription Factors
  Genome Research. Apr, 2009  |   Pubmed ID: 19158363
• Genome-wide Promoter Analysis of the SOX4 Transcriptional Network in Prostate Cancer Cells
  Cancer Research. Jan, 2009  |   Pubmed ID: 19147588
• Predicting the Binding Preference of Transcription Factors to Individual DNA K-mers
  Bioinformatics (Oxford, England). Apr, 2009  |   Pubmed ID: 19088121
• The Vibrio Harveyi Master Quorum-sensing Regulator, LuxR, a TetR-type Protein is Both an Activator and a Repressor: DNA Recognition and Binding Specificity at Target Promoters
  Molecular Microbiology. Oct, 2008  |   Pubmed ID: 18681939
• Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments
  Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Sep, 2008  |   Pubmed ID: 18651798
• Variation in Homeodomain DNA Binding Revealed by High-resolution Analysis of Sequence Preferences
  Cell. Jun, 2008  |   Pubmed ID: 18585359
• Microarray Analyses of Newborn Mouse Ovaries Lacking Nobox
  Biology of Reproduction. Aug, 2007  |   Pubmed ID: 17494914
• Inferring Condition-specific Transcription Factor Function from DNA Binding and Gene Expression Data
  Molecular Systems Biology. 2007  |   Pubmed ID: 17437025
• Approaching a Complete Repository of Sequence-verified Protein-encoding Clones for Saccharomyces Cerevisiae
  Genome Research. Apr, 2007  |   Pubmed ID: 17322287
• Compact, Universal DNA Microarrays to Comprehensively Determine Transcription-factor Binding Site Specificities
  Nature Biotechnology. Nov, 2006  |   Pubmed ID: 16998473
• Protein Binding Microarrays (PBMs) for Rapid, High-throughput Characterization of the Sequence Specificities of DNA Binding Proteins
  Methods in Molecular Biology (Clifton, N.J.). 2006  |   Pubmed ID: 16888363
• Rapid Analysis of the DNA-binding Specificities of Transcription Factors with DNA Microarrays
  Nature Genetics. Dec, 2004  |   Pubmed ID: 15543148