Michael Brenowitz

Publications

• Spatial Arrangement of an RNA Zipcode Identifies MRNAs Under Post-transcriptional Control
  Genes & Development. Jan, 2012  |   Pubmed ID: 22215810
• Entropy-driven Binding of Picomolar Transition State Analogue Inhibitors to Human 5'-methylthioadenosine Phosphorylase
  Biochemistry. Nov, 2011  |   Pubmed ID: 21985704
• A Microfluidic Device That Generates Hydroxyl Radicals to Probe the Solvent Accessible Surface of Nucleic Acids
  Lab on a Chip. Oct, 2011  |   Pubmed ID: 21863183
• Introduction: Twenty Five Years of the Gibbs Conference on Biothermodynamics
  Biophysical Chemistry. Nov, 2011  |   Pubmed ID: 21840113
• RNA Molecules with Conserved Catalytic Cores but Variable Peripheries Fold Along Unique Energetically Optimized Pathways
  RNA (New York, N.Y.). Aug, 2011  |   Pubmed ID: 21712400
• Stability, Denaturation and Refolding of Mycobacterium Tuberculosis MfpA, a DNA Mimicking Protein That Confers Antibiotic Resistance
  Biophysical Chemistry. Nov, 2011  |   Pubmed ID: 21605934
• Decoy Strategies: the Structure of TL1A:DcR3 Complex
  Structure (London, England : 1993). Feb, 2011  |   Pubmed ID: 21300286
• Phenothiazines Inhibit S100A4 Function by Inducing Protein Oligomerization
  Proceedings of the National Academy of Sciences of the United States of America. May, 2010  |   Pubmed ID: 20421509
• Conformational States of Human Purine Nucleoside Phosphorylase at Rest, at Work, and with Transition State Analogues
  Biochemistry. Mar, 2010  |   Pubmed ID: 20108972
• Biochemical and Structural Characterization of the Human TL1A Ectodomain
  Biochemistry. Aug, 2009  |   Pubmed ID: 19522538
• Complementing Global Measures of RNA Folding with Local Reports of Backbone Solvent Accessibility by Time Resolved Hydroxyl Radical Footprinting
  Methods (San Diego, Calif.). Oct, 2009  |   Pubmed ID: 19426806
• Evolutionary and Biophysical Relationships Among the Papillomavirus E2 Proteins
  Frontiers in Bioscience : a Journal and Virtual Library. 2009  |   Pubmed ID: 19273107
• PEGylation of Val-1(alpha) Destabilizes the Tetrameric Structure of Hemoglobin
  Biochemistry. Jan, 2009  |   Pubmed ID: 19119852
• Solution Structure and Refolding of the Mycobacterium Tuberculosis Pentapeptide Repeat Protein MfpA
  The Journal of Biological Chemistry. Dec, 2008  |   Pubmed ID: 18977756
• Energy Barriers, Pathways, and Dynamics During Folding of Large, Multidomain RNAs
  Current Opinion in Chemical Biology. Dec, 2008  |   Pubmed ID: 18926923
• Semiautomated and Rapid Quantification of Nucleic Acid Footprinting and Structure Mapping Experiments
  Nature Protocols. 2008  |   Pubmed ID: 18772866
• Function and Structural Organization of Mot1 Bound to a Natural Target Promoter
  The Journal of Biological Chemistry. Sep, 2008  |   Pubmed ID: 18606810
• High-throughput Single-nucleotide Structural Mapping by Capillary Automated Footprinting Analysis
  Nucleic Acids Research. Jun, 2008  |   Pubmed ID: 18477638
• Hinge Stiffness is a Barrier to RNA Folding
  Journal of Molecular Biology. Jun, 2008  |   Pubmed ID: 18471829
• Monitoring Structural Changes in Nucleic Acids with Single Residue Spatial and Millisecond Time Resolution by Quantitative Hydroxyl Radical Footprinting
  Nature Protocols. 2008  |   Pubmed ID: 18274531
• Evolution of GITRL Immune Function: Murine GITRL Exhibits Unique Structural and Biochemical Properties Within the TNF Superfamily
  Proceedings of the National Academy of Sciences of the United States of America. Jan, 2008  |   Pubmed ID: 18182486
• Following Molecular Transitions with Single Residue Spatial and Millisecond Time Resolution
  Methods in Cell Biology. 2008  |   Pubmed ID: 17964944
• Assembly and Structural Properties of Glucocorticoid-induced TNF Receptor Ligand: Implications for Function
  Proceedings of the National Academy of Sciences of the United States of America. Dec, 2007  |   Pubmed ID: 18040044
• DNA and Protein Footprinting Analysis of the Modulation of DNA Binding by the N-terminal Domain of the Saccharomyces Cerevisiae TATA Binding Protein
  Biochemistry. Sep, 2007  |   Pubmed ID: 17683121
• Distinct Contribution of Electrostatics, Initial Conformational Ensemble, and Macromolecular Stability in RNA Folding
  Proceedings of the National Academy of Sciences of the United States of America. Apr, 2007  |   Pubmed ID: 17438287
• Influence of the N-terminal Domain and Divalent Cations on Self-association and DNA Binding by the Saccharomyces Cerevisiae TATA Binding Protein
  Biochemistry. Apr, 2007  |   Pubmed ID: 17378582
• Influence of Intramolecular Cross-links on the Molecular, Structural and Functional Properties of PEGylated Haemoglobin
  The Biochemical Journal. Feb, 2007  |   Pubmed ID: 17049048
• Binding then Bending: a Mechanism for Wrapping DNA
  Proceedings of the National Academy of Sciences of the United States of America. Dec, 2006  |   Pubmed ID: 17159146
• Following the Dynamics of Changes in Solvent Accessibility of 16 S and 23 S RRNA During Ribosomal Subunit Association Using Synchrotron-generated Hydroxyl Radicals
  Journal of Molecular Biology. Jun, 2006  |   Pubmed ID: 16725154
• Fast Fenton Footprinting: a Laboratory-based Method for the Time-resolved Analysis of DNA, RNA and Proteins
  Nucleic Acids Research. 2006  |   Pubmed ID: 16582097
• Local Kinetic Measures of Macromolecular Structure Reveal Partitioning Among Multiple Parallel Pathways from the Earliest Steps in the Folding of a Large RNA Molecule
  Journal of Molecular Biology. May, 2006  |   Pubmed ID: 16574145
• Snf2/Swi2-related ATPase Mot1 Drives Displacement of TATA-binding Protein by Gripping DNA
  The EMBO Journal. Apr, 2006  |   Pubmed ID: 16541100
• Indirect Readout of DNA Sequence by Papillomavirus E2 Proteins Depends Upon Net Cation Uptake
  Journal of Molecular Biology. Apr, 2006  |   Pubmed ID: 16513133
• Concordant Exploration of the Kinetics of RNA Folding from Global and Local Perspectives
  Journal of Molecular Biology. Jan, 2006  |   Pubmed ID: 16303138
• Perturbation of the Hierarchical Folding of a Large RNA by the Destabilization of Its Scaffold's Tertiary Structure
  Journal of Molecular Biology. Nov, 2005  |   Pubmed ID: 16242711
• Overproduction of Alpha Chains Provides a Proton-insensitive Component to the Bluefish Hemoglobin System
  The Journal of Biological Chemistry. Dec, 2005  |   Pubmed ID: 16166086
• Catching RNA Polymerase in the Act of Binding: Intermediates in Transcription Illuminated by Synchrotron Footprinting
  Proceedings of the National Academy of Sciences of the United States of America. Mar, 2005  |   Pubmed ID: 15781859
• Principles of RNA Compaction: Insights from the Equilibrium Folding Pathway of the P4-P6 RNA Domain in Monovalent Cations
  Journal of Molecular Biology. Nov, 2004  |   Pubmed ID: 15491606
• Monovalent Ion-mediated Folding of the Tetrahymena Thermophila Ribozyme
  Journal of Molecular Biology. Oct, 2004  |   Pubmed ID: 15364572
• Semi-automated, Single-band Peak-fitting Analysis of Hydroxyl Radical Nucleic Acid Footprint Autoradiograms for the Quantitative Analysis of Transitions
  Nucleic Acids Research. 2004  |   Pubmed ID: 15319447
• Comparison of the Effect of Water Release on the Interaction of the Saccharomyces Cerevisiae TATA Binding Protein (TBP) with "TATA Box" Sequences Composed of Adenosine or Inosine
  Biophysical Journal. Jan, 2004  |   Pubmed ID: 14695279
• Quaternary Solution Structures of Galectins-1, -3, and -7
  Glycobiology. Mar, 2004  |   Pubmed ID: 14693909
• An Alternative Route for the Folding of Large RNAs: Apparent Two-state Folding by a Group II Intron Ribozyme
  Journal of Molecular Biology. Dec, 2003  |   Pubmed ID: 14636593
• Multiple Monovalent Ion-dependent Pathways for the Folding of the L-21 Tetrahymena Thermophila Ribozyme
  Journal of Molecular Biology. Apr, 2003  |   Pubmed ID: 12691754
• Solution Structure and Interdomain Interactions of the Saccharomyces Cerevisiae "TATA Binding Protein" (TBP) Probed by Radiolytic Protein Footprinting
  Biochemistry. Apr, 2003  |   Pubmed ID: 12667055
• Probing the Structural Dynamics of Nucleic Acids by Quantitative Time-resolved and Equilibrium Hydroxyl Radical "footprinting"
  Current Opinion in Structural Biology. Oct, 2002  |   Pubmed ID: 12464318
• Monovalent Cations Mediate Formation of Native Tertiary Structure of the Tetrahymena Thermophila Ribozyme
  Nature Structural Biology. Dec, 2002  |   Pubmed ID: 12434149
• Solution Structural Studies of the Saccharomyces Cerevisiae TATA Binding Protein (TBP)
  Biochemistry. Jul, 2002  |   Pubmed ID: 12135378
• Linkage of Monovalent and Divalent Ion Binding in the Folding of the P4-P6 Domain of the Tetrahymena Ribozyme
  Biochemistry. May, 2002  |   Pubmed ID: 11980483
• Concerted Binding and Bending of DNA by Escherichia Coli Integration Host Factor
  Journal of Molecular Biology. Feb, 2002  |   Pubmed ID: 11827473
• Productive Folding to the Native State by a Group II Intron Ribozyme
  Journal of Molecular Biology. Jan, 2002  |   Pubmed ID: 11786013