Quanhu Sheng

Publications

• RNA Sequencing of Formalin-Fixed, Paraffin-Embedded Specimens for Gene Expression Quantification and Data Mining
  International Journal of Genomics. 2016  |   Pubmed ID: 27774452
• Multi-perspective Quality Control of Illumina RNA Sequencing Data Analysis
  Briefings in Functional Genomics. Sep, 2016  |   Pubmed ID: 27687708
• Heterozygosity Ratio, a Robust Global Genomic Measure of Autozygosity and Its Association with Height and Disease Risk
  Genetics. Aug, 2016  |   Pubmed ID: 27585849
• LncRNA Expression in the Auditory Forebrain During Postnatal Development
  Gene. Nov, 2016  |   Pubmed ID: 27544636
• High-Resolution Mapping of RNA Polymerases Identifies Mechanisms of Sensitivity and Resistance to BET Inhibitors in T(8;21) AML
  Cell Reports. Aug, 2016  |   Pubmed ID: 27498870
• Performance Investigation of Proteomic Identification by HCD/CID Fragmentations in Combination with High/Low-Resolution Detectors on a Tribrid, High-Field Orbitrap Instrument
  PloS One. 2016  |   Pubmed ID: 27472422
• Practicability of Detecting Somatic Point Mutation from RNA High Throughput Sequencing Data
  Genomics. May, 2016  |   Pubmed ID: 27046520
• RNAseq by Total RNA Library Identifies Additional RNAs Compared to Poly(A) RNA Library
  BioMed Research International. 2015  |   Pubmed ID: 26543871
• Transfer RNA Detection by Small RNA Deep Sequencing and Disease Association with Myelodysplastic Syndromes
  BMC Genomics. Sep, 2015  |   Pubmed ID: 26400237
• Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data
  Journal of Proteome Research. Nov, 2015  |   Pubmed ID: 26390080
• Monitoring Newly Synthesized Proteins over the Adult Life Span of Caenorhabditis Elegans
  Journal of Proteome Research. Mar, 2015  |   Pubmed ID: 25686393
• Preprocessing Significantly Improves the Peptide/protein Identification Sensitivity of High-resolution Isobarically Labeled Tandem Mass Spectrometry Data
  Molecular & Cellular Proteomics : MCP. Feb, 2015  |   Pubmed ID: 25435543
• RNAseqPS: A Web Tool for Estimating Sample Size and Power for RNAseq Experiment
  Cancer Informatics. 2014  |   Pubmed ID: 25374457
• Detection of Internal Exon Deletion with Exon Del
  BMC Bioinformatics. Oct, 2014  |   Pubmed ID: 25322818
• Illumina Human Exome Genotyping Array Clustering and Quality Control
  Nature Protocols. Nov, 2014  |   Pubmed ID: 25321409
• ICan: an Optimized Ion-current-based Quantification Procedure with Enhanced Quantitative Accuracy and Sensitivity in Biomarker Discovery
  Journal of Proteome Research. Dec, 2014  |   Pubmed ID: 25285707
• DupChecker: a Bioconductor Package for Checking High-throughput Genomic Data Redundancy in Meta-analysis
  BMC Bioinformatics. Sep, 2014  |   Pubmed ID: 25267467
• Advanced Heat Map and Clustering Analysis Using Heatmap3
  BioMed Research International. 2014  |   Pubmed ID: 25143956
• MultiRankSeq: Multiperspective Approach for RNAseq Differential Expression Analysis and Quality Control
  BioMed Research International. 2014  |   Pubmed ID: 24977143
• O18Quant: a Semiautomatic Strategy for Quantitative Analysis of High-resolution 16O/18O Labeled Data
  BioMed Research International. 2014  |   Pubmed ID: 24901003
• Multi-perspective Quality Control of Illumina Exome Sequencing Data Using QC3
  Genomics. May-Jun, 2014  |   Pubmed ID: 24703969
• Systematic Assessment of Survey Scan and MS2-based Abundance Strategies for Label-free Quantitative Proteomics Using High-resolution MS Data
  Journal of Proteome Research. Apr, 2014  |   Pubmed ID: 24635752
• Very Low-level Heteroplasmy MtDNA Variations Are Inherited in Humans
  Journal of Genetics and Genomics = Yi Chuan Xue Bao. Dec, 2013  |   Pubmed ID: 24377867
• Large Scale Comparison of Gene Expression Levels by Microarrays and RNAseq Using TCGA Data
  PloS One. 2013  |   Pubmed ID: 23977046
• Serum Proteome Changes in Healthy Subjects with Different Genotypes of NOS1AP in the Chinese Population
  Journal of Diabetes Research. 2013  |   Pubmed ID: 23671866
• Delicate Analysis of Post-translational Modifications on Dishevelled 3
  Journal of Proteome Research. Jul, 2012  |   Pubmed ID: 22612246
• BuildSummary: Using a Group-based Approach to Improve the Sensitivity of Peptide/protein Identification in Shotgun Proteomics
  Journal of Proteome Research. Mar, 2012  |   Pubmed ID: 22217156
• SRMBuilder: a User-friendly Tool for Selected Reaction Monitoring Data Analysis
  Journal of Bioinformatics and Computational Biology. Dec, 2011  |   Pubmed ID: 22144253
• Proteomic Changes in the Photoreceptor Outer Segment Upon Intense Light Exposure
  Journal of Proteome Research. Feb, 2010  |   Pubmed ID: 20020778
• A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics
  Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. Aug, 2009  |   Pubmed ID: 19645593
• A Platform to Standardize, Store, and Visualize Proteomics Experimental Data
  Acta Biochimica Et Biophysica Sinica. Apr, 2009  |   Pubmed ID: 19352541
• On the Estimation of False Positives in Peptide Identifications Using Decoy Search Strategy
  Proteomics. Jan, 2009  |   Pubmed ID: 19053142
• ProteinQuant Suite: a Bundle of Automated Software Tools for Label-free Quantitative Proteomics
  Rapid Communications in Mass Spectrometry : RCM. Dec, 2008  |   Pubmed ID: 18985620
• A Computational Approach to Characterizing Bond Linkages of Glycan Isomers Using Matrix-assisted Laser Desorption/ionization Tandem Time-of-flight Mass Spectrometry
  Rapid Communications in Mass Spectrometry : RCM. Nov, 2008  |   Pubmed ID: 18853404
• Quantitative Comparison of Sarcomeric Phosphoproteomes of Neonatal and Adult Rat Hearts
  American Journal of Physiology. Heart and Circulatory Physiology. Aug, 2008  |   Pubmed ID: 18552161
• Fast and Accurate Identification of Semi-tryptic Peptides in Shotgun Proteomics
  Bioinformatics (Oxford, England). Jan, 2008  |   Pubmed ID: 18033797