Raluca Gordan Center for Genomic and Computational Biology, Department of Biostatistics and Bioinformatics Duke University Biography Publications Institution JoVE Articles Raluca Gordan has not added a biography. If you are Raluca Gordan and would like to personalize this page please email our Author Liaison for assistance. Publications Unexpected Implications of STAT3 Acetylation Revealed by Genetic Encoding of Acetyl-lysine Biochimica Et Biophysica Acta. General Subjects. Sep, 2019 | Pubmed ID: 31170499 QBiC-Pred: Quantitative Predictions of Transcription Factor Binding Changes Due to Sequence Variants Nucleic Acids Research. Jul, 2019 | Pubmed ID: 31114870 DNA Sequence Context Controls the Binding and Processivity of the T7 DNA Primase IScience. Apr, 2018 | Pubmed ID: 30428370 Genetic Variation Determines VEGF-A Plasma Levels in Cancer Patients Scientific Reports. 11, 2018 | Pubmed ID: 30397360 The Vitamin D Receptor Gene As a Determinant of Survival in Pancreatic Cancer Patients: Genomic Analysis and Experimental Validation PloS One. 2018 | Pubmed ID: 30107003 Toward Deciphering the Mechanistic Role of Variations in the Rep1 Repeat Site in the Transcription Regulation of SNCA Gene Neurogenetics. Aug, 2018 | Pubmed ID: 29730780 Divergence in DNA Specificity Among Paralogous Transcription Factors Contributes to Their Differential In Vivo Binding Cell Systems. Apr, 2018 | Pubmed ID: 29605182 Incomplete MyoD-induced Transdifferentiation is Associated with Chromatin Remodeling Deficiencies Nucleic Acids Research. Nov, 2017 | Pubmed ID: 28977539 Inkjet-printed Point-of-care Immunoassay on a Nanoscale Polymer Brush Enables Subpicomolar Detection of Analytes in Blood Proceedings of the National Academy of Sciences of the United States of America. 08, 2017 | Pubmed ID: 28784765 Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding Research in Computational Molecular Biology : ... Annual International Conference, RECOMB ... : Proceedings. RECOMB (Conference : 2005-). May, 2017 | Pubmed ID: 28691125 Whole-Genome and Epigenomic Landscapes of Etiologically Distinct Subtypes of Cholangiocarcinoma Cancer Discovery. 10, 2017 | Pubmed ID: 28667006 Expression Level is a Key Determinant of E2F1-mediated Cell Fate Cell Death and Differentiation. 04, 2017 | Pubmed ID: 28211871 Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade Through Opposing Activities of Both Activators and Repressors Developmental Cell. 12, 2016 | Pubmed ID: 27923776 Transcription Factor-DNA Binding Motifs in Saccharomyces Cerevisiae: Tools and Resources Cold Spring Harbor Protocols. 11, 2016 | Pubmed ID: 27803259 Punctuated Evolution and Transitional Hybrid Network in an Ancestral Cell Cycle of Fungi ELife. 05, 2016 | Pubmed ID: 27162172 HDAC Inhibitors Cause Site-specific Chromatin Remodeling at PU.1-bound Enhancers in K562 Cells Epigenetics & Chromatin. 2016 | Pubmed ID: 27087856 Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes PLoS Computational Biology. Aug, 2015 | Pubmed ID: 26285121 Quantitative Modeling of Transcription Factor Binding Specificities Using DNA Shape Proceedings of the National Academy of Sciences of the United States of America. Apr, 2015 | Pubmed ID: 25775564 Human-chimpanzee Differences in a FZD8 Enhancer Alter Cell-cycle Dynamics in the Developing Neocortex Current Biology : CB. Mar, 2015 | Pubmed ID: 25702574 Protein-DNA Binding in the Absence of Specific Base-pair Recognition Proceedings of the National Academy of Sciences of the United States of America. Dec, 2014 | Pubmed ID: 25313048 Sequence Specificity Incompletely Defines the Genome-wide Occupancy of Myc Genome Biology. 2014 | Pubmed ID: 25287278 Absence of a Simple Code: How Transcription Factors Read the Genome Trends in Biochemical Sciences. Sep, 2014 | Pubmed ID: 25129887 COUGER--co-factors Associated with Uniquely-bound Genomic Regions Nucleic Acids Research. Jul, 2014 | Pubmed ID: 24861628 Protein-DNA Binding: Complexities and Multi-protein Codes Nucleic Acids Research. Feb, 2014 | Pubmed ID: 24243859 TFBSshape: a Motif Database for DNA Shape Features of Transcription Factor Binding Sites Nucleic Acids Research. Jan, 2014 | Pubmed ID: 24214955 Stability Selection for Regression-based Models of Transcription Factor-DNA Binding Specificity Bioinformatics (Oxford, England). Jul, 2013 | Pubmed ID: 23812975 Genomic Regions Flanking E-box Binding Sites Influence DNA Binding Specificity of BHLH Transcription Factors Through DNA Shape Cell Reports. Apr, 2013 | Pubmed ID: 23562153 Identification of Cell Cycle-regulated, Putative Hyphal Genes in Candida Albicans Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2012 | Pubmed ID: 22174285 Identification of Tat-SF1 Cellular Targets by Exon Array Analysis Reveals Dual Roles in Transcription and Splicing RNA (New York, N.Y.). Apr, 2011 | Pubmed ID: 21282347 Finding Regulatory DNA Motifs Using Alignment-free Evolutionary Conservation Information Nucleic Acids Research. Apr, 2010 | Pubmed ID: 20047961 Drosophila ORC Localizes to Open Chromatin and Marks Sites of Cohesin Complex Loading Genome Research. Feb, 2010 | Pubmed ID: 19996087 Distinguishing Direct Versus Indirect Transcription Factor-DNA Interactions Genome Research. Nov, 2009 | Pubmed ID: 19652015 Using DNA Duplex Stability Information for Transcription Factor Binding Site Discovery Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2008 | Pubmed ID: 18229707 A Nucleosome-guided Map of Transcription Factor Binding Sites in Yeast PLoS Computational Biology. Nov, 2007 | Pubmed ID: 17997593 Informative Priors Based on Transcription Factor Structural Class Improve De Novo Motif Discovery Bioinformatics (Oxford, England). Jul, 2006 | Pubmed ID: 16873497 DNA-sekvens genkendelse af DNA Primase ved hjælp af Primase profilering med høj gennemløb Stefan Ilic1, Shira Cohen1, Ariel Afek2, Raluca Gordan2, David B. Lukatsky1, Barak Akabayov1 1Department of Chemistry, Ben-Gurion University of the Negev, 2Center for Genomic and Computational Biology, Department of Biostatistics and Bioinformatics, Duke University JoVE 59737 Biochemistry
DNA-sekvens genkendelse af DNA Primase ved hjælp af Primase profilering med høj gennemløb Stefan Ilic1, Shira Cohen1, Ariel Afek2, Raluca Gordan2, David B. Lukatsky1, Barak Akabayov1 1Department of Chemistry, Ben-Gurion University of the Negev, 2Center for Genomic and Computational Biology, Department of Biostatistics and Bioinformatics, Duke University JoVE 59737 Biochemistry