Robert A Edwards

Publications

• Probiotic Bacteria Reduce Salmonella Typhimurium Intestinal Colonization by Competing for Iron
  Cell Host & Microbe. Jul, 2013  |   Pubmed ID: 23870311
• Circadian Clock Regulates the Host Response to Salmonella
  Proceedings of the National Academy of Sciences of the United States of America. Jun, 2013  |   Pubmed ID: 23716692
• Explaining Microbial Phenotypes on a Genomic Scale: GWAS for Microbes
  Briefings in Functional Genomics. Jul, 2013  |   Pubmed ID: 23625995
• Multivariate Analysis of Functional Metagenomes
  Frontiers in Genetics. 2013  |   Pubmed ID: 23579547
• Structure and Function of a Cyanophage-encoded Peptide Deformylase
  The ISME Journal. Jun, 2013  |   Pubmed ID: 23407310
• A Bioinformatic Analysis of Ribonucleotide Reductase Genes in Phage Genomes and Metagenomes
  BMC Evolutionary Biology. 2013  |   Pubmed ID: 23391036
• Applying Shannon's Information Theory to Bacterial and Phage Genomes and Metagenomes
  Scientific Reports. 2013  |   Pubmed ID: 23301154
• Intracellular Trafficking of the KV1.3 Potassium Channel is Regulated by the Prodomain of a Matrix Metalloprotease
  The Journal of Biological Chemistry. Mar, 2013  |   Pubmed ID: 23300077
• SEED Servers: High-performance Access to the SEED Genomes, Annotations, and Metabolic Models
  PloS One. 2012  |   Pubmed ID: 23110173
• Reference-independent Comparative Metagenomics Using Cross-assembly: CrAss
  Bioinformatics (Oxford, England). Dec, 2012  |   Pubmed ID: 23074261
• Real Time Metagenomics: Using K-mers to Annotate Metagenomes
  Bioinformatics (Oxford, England). Dec, 2012  |   Pubmed ID: 23047562
• Metabolic Trajectory of Cellular Differentiation in Small Intestine by Phasor Fluorescence Lifetime Microscopy of NADH
  Scientific Reports. 2012  |   Pubmed ID: 22891156
• Microfluidic PCR Combined with Pyrosequencing for Identification of Allelic Variants with Phenotypic Associations Among Targeted Salmonella Genes
  Applied and Environmental Microbiology. Oct, 2012  |   Pubmed ID: 22885744
• Sequencing of Seven Haloarchaeal Genomes Reveals Patterns of Genomic Flux
  PloS One. 2012  |   Pubmed ID: 22848480
• Taxonomic and Functional Microbial Signatures of the Endemic Marine Sponge Arenosclera Brasiliensis
  PloS One. 2012  |   Pubmed ID: 22768320
• Diversification of the Salmonella Fimbriae: a Model of Macro- and Microevolution
  PloS One. 2012  |   Pubmed ID: 22701679
• Genome-wide Study of the Defective Sucrose Fermenter Strain of Vibrio Cholerae from the Latin American Cholera Epidemic
  PloS One. 2012  |   Pubmed ID: 22662140
• MiR-23a Promotes the Transition from Indolent to Invasive Colorectal Cancer
  Cancer Discovery. Jun, 2012  |   Pubmed ID: 22628407
• PhiSpy: a Novel Algorithm for Finding Prophages in Bacterial Genomes That Combines Similarity- and Composition-based Strategies
  Nucleic Acids Research. Sep, 2012  |   Pubmed ID: 22584627
• Genome Sequences of the Ethanol-tolerant Lactobacillus Vini Strains LMG 23202T and JP7.8.9
  Journal of Bacteriology. Jun, 2012  |   Pubmed ID: 22582376
• Genome Sequence of the Bacterioplanktonic, Mixotrophic Vibrio Campbellii Strain PEL22A, Isolated in the Abrolhos Bank
  Journal of Bacteriology. May, 2012  |   Pubmed ID: 22535939
• Muscle Sarcomas and Alopecia in A/J Mice Chronically Treated with Nicotine
  Life Sciences. Nov, 2012  |   Pubmed ID: 22521759
• Draft Genome Sequence of the Shrimp Pathogen Vibrio Harveyi CAIM 1792
  Journal of Bacteriology. Apr, 2012  |   Pubmed ID: 22461546
• Zinc Sequestration by the Neutrophil Protein Calprotectin Enhances Salmonella Growth in the Inflamed Gut
  Cell Host & Microbe. Mar, 2012  |   Pubmed ID: 22423963
• PhiSiGns: an Online Tool to Identify Signature Genes in Phages and Design PCR Primers for Examining Phage Diversity
  BMC Bioinformatics. 2012  |   Pubmed ID: 22385976
• TNF-α Induces Up-Regulation of EGFR Expression and Signaling in Human Colonic Myofibroblasts
  American Journal of Physiology. Gastrointestinal and Liver Physiology. Feb, 2012  |   Pubmed ID: 22301110
• Characterization of the ELPhiS Prophage from Salmonella Enterica Serovar Enteritidis Strain LK5
  Applied and Environmental Microbiology. Jan, 2012  |   Pubmed ID: 22247173
• PHACTS, a Computational Approach to Classifying the Lifestyle of Phages
  Bioinformatics (Oxford, England). Jan, 2012  |   Pubmed ID: 22238260
• Phage-bacteria Relationships and CRISPR Elements Revealed by a Metagenomic Survey of the Rumen Microbiome
  Environmental Microbiology. Jan, 2012  |   Pubmed ID: 22004549
• Genome Sequence of the Human Pathogen Vibrio Cholerae Amazonia
  Journal of Bacteriology. Oct, 2011  |   Pubmed ID: 21952545
• Cytokine-induced Alterations of α7 Nicotinic Receptor in Colonic CD4 T Cells Mediate Dichotomous Response to Nicotine in Murine Models of Th1/Th17- Versus Th2-mediated Colitis
  Journal of Immunology (Baltimore, Md. : 1950). Sep, 2011  |   Pubmed ID: 21784975
• Linking Lipid Metabolism to the Innate Immune Response in Macrophages Through Sterol Regulatory Element Binding Protein-1a
  Cell Metabolism. May, 2011  |   Pubmed ID: 21531336
• Mutation of NIMA-related Kinase 1 (NEK1) Leads to Chromosome Instability
  Molecular Cancer. 2011  |   Pubmed ID: 21214959
• Accessing the SEED Genome Databases Via Web Services API: Tools for Programmers
  BMC Bioinformatics. 2010  |   Pubmed ID: 20546611
• Transposases Are the Most Abundant, Most Ubiquitous Genes in Nature
  Nucleic Acids Research. Jul, 2010  |   Pubmed ID: 20215432
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  Cancer Research. Feb, 2010  |   Pubmed ID: 20145124
• Bovine Serum Albumin Glutaraldehyde for Completely Sutureless Laparoscopic Heminephrectomy in a Survival Porcine Model
  Journal of Endourology / Endourological Society. Mar, 2010  |   Pubmed ID: 20059350
• Lysogeny and Sporulation in Bacillus Isolates from the Gulf of Mexico
  Applied and Environmental Microbiology. Feb, 2010  |   Pubmed ID: 20008174
• The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes
  PLoS Computational Biology. Dec, 2009  |   Pubmed ID: 20011103
• Epigenetic Repression of DNA Mismatch Repair by Inflammation and Hypoxia in Inflammatory Bowel Disease-associated Colorectal Cancer
  Cancer Research. Aug, 2009  |   Pubmed ID: 19638594
• Metagenomic Analysis of Stressed Coral Holobionts
  Environmental Microbiology. Aug, 2009  |   Pubmed ID: 19397678
• Evaluation of the Outcomes of Electrosurgical Induced Bowel Injury Treated with Tissue Glue/sealant Versus Sutured Repair in a Rabbit Model
  Journal of Endourology / Endourological Society. Mar, 2009  |   Pubmed ID: 19275489
• The 'buoy' Stent: Evaluation of a Prototype Indwelling Ureteric Stent in a Porcine Model
  BJU International. Jul, 2009  |   Pubmed ID: 19154469
• Comparative Study of in Vivo Lymphatic Sealing Capability of the Porcine Thoracic Duct Using Laparoscopic Dissection Devices
  The Journal of Urology. Jan, 2009  |   Pubmed ID: 19010491
• Metagenomic Analysis Indicates That Stressors Induce Production of Herpes-like Viruses in the Coral Porites Compressa
  Proceedings of the National Academy of Sciences of the United States of America. Nov, 2008  |   Pubmed ID: 19017800
• Comparative Metagenomics Reveals Host Specific Metavirulomes and Horizontal Gene Transfer Elements in the Chicken Cecum Microbiome
  PloS One. 2008  |   Pubmed ID: 18698407
• Bone Marrow Stem Cells for Urologic Tissue Engineering
  World Journal of Urology. Aug, 2008  |   Pubmed ID: 18654786
• Taxonomic Composition and Gene Content of a Methane-producing Microbial Community Isolated from a Biogas Reactor
  Journal of Biotechnology. Aug, 2008  |   Pubmed ID: 18611419
• Viral Diversity and Dynamics in an Infant Gut
  Research in Microbiology. Jun, 2008  |   Pubmed ID: 18541415
• Viral Communities Associated with Healthy and Bleaching Corals
  Environmental Microbiology. Sep, 2008  |   Pubmed ID: 18479440
• Role for Epithelial Dysregulation in Early-onset Colitis-associated Colon Cancer in Gi2-alpha-/- Mice
  Inflammatory Bowel Diseases. Jul, 2008  |   Pubmed ID: 18340649
• Functional Metagenomic Profiling of Nine Biomes
  Nature. Apr, 2008  |   Pubmed ID: 18337718
• Comparison of Healing After Cystotomy and Repair with Fibrin Glue and Sutured Closure in the Porcine Model
  Journal of Endourology / Endourological Society. Jan, 2008  |   Pubmed ID: 18315486
• Biodiversity and Biogeography of Phages in Modern Stromatolites and Thrombolites
  Nature. Mar, 2008  |   Pubmed ID: 18311127
• Microbial Ecology of Four Coral Atolls in the Northern Line Islands
  PloS One. 2008  |   Pubmed ID: 18301735
• Phylogenetic Classification of Short Environmental DNA Fragments
  Nucleic Acids Research. Apr, 2008  |   Pubmed ID: 18285365
• The RAST Server: Rapid Annotations Using Subsystems Technology
  BMC Genomics. 2008  |   Pubmed ID: 18261238
• Bacterial Carbon Processing by Generalist Species in the Coastal Ocean
  Nature. Feb, 2008  |   Pubmed ID: 18223640
• Evidence for Differential Roles for NKG2D Receptor Signaling in Innate Host Defense Against Coronavirus-induced Neurological and Liver Disease
  Journal of Virology. Mar, 2008  |   Pubmed ID: 18094157
• Metagenomic and Small-subunit RRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil
  Applied and Environmental Microbiology. Nov, 2007  |   Pubmed ID: 17827313
• Expression of CXC Chemokine Ligand 10 from the Mouse Hepatitis Virus Genome Results in Protection from Viral-induced Neurological and Liver Disease
  Journal of Immunology (Baltimore, Md. : 1950). Jul, 2007  |   Pubmed ID: 17617609
• Development of Indole Chemistry to Label Tryptophan Residues in Protein for Determination of Tryptophan Surface Accessibility
  Protein Science : a Publication of the Protein Society. Jun, 2007  |   Pubmed ID: 17525468
• Decreased MAPK- and PGE2-dependent IL-11 Production in Gialpha2-/- Colonic Myofibroblasts
  American Journal of Physiology. Gastrointestinal and Liver Physiology. Jun, 2007  |   Pubmed ID: 17332478
• The National Microbial Pathogen Database Resource (NMPDR): a Genomics Platform Based on Subsystem Annotation
  Nucleic Acids Research. Jan, 2007  |   Pubmed ID: 17145713
• The Marine Viromes of Four Oceanic Regions
  PLoS Biology. Nov, 2006  |   Pubmed ID: 17090214
• Finding Novel Genes in Bacterial Communities Isolated from the Environment
  Bioinformatics (Oxford, England). Jul, 2006  |   Pubmed ID: 16873483
• Identification of Trichloroethanol Visualized Proteins from Two-dimensional Polyacrylamide Gels by Mass Spectrometry
  Analytical Chemistry. Apr, 2006  |   Pubmed ID: 16579625
• Using Pyrosequencing to Shed Light on Deep Mine Microbial Ecology
  BMC Genomics. 2006  |   Pubmed ID: 16549033
• An Application of Statistics to Comparative Metagenomics
  BMC Bioinformatics. 2006  |   Pubmed ID: 16549025
• Differential Roles for CXCR3 in CD4+ and CD8+ T Cell Trafficking Following Viral Infection of the CNS
  European Journal of Immunology. Mar, 2006  |   Pubmed ID: 16479546
• Low-molecular-weight Protein Tyrosine Phosphatases of Bacillus Subtilis
  Journal of Bacteriology. Jul, 2005  |   Pubmed ID: 15995210
• Viral Metagenomics
  Nature Reviews. Microbiology. Jun, 2005  |   Pubmed ID: 15886693
• Impaired TGF-beta Responses in Peripheral T Cells of G Alpha I2-/- Mice
  Journal of Immunology (Baltimore, Md. : 1950). May, 2005  |   Pubmed ID: 15879107
• In Vitro Characterization of the Bacillus Subtilis Protein Tyrosine Phosphatase YwqE
  Journal of Bacteriology. May, 2005  |   Pubmed ID: 15866923
• Mosaic Prophages with Horizontally Acquired Genes Account for the Emergence and Diversification of the Globally Disseminated M1T1 Clone of Streptococcus Pyogenes
  Journal of Bacteriology. May, 2005  |   Pubmed ID: 15866915
• Robotic Radical Prostatectomy: a Technique to Reduce PT2 Positive Margins
  Urology. Dec, 2004  |   Pubmed ID: 15596205
• Visible Fluorescent Detection of Proteins in Polyacrylamide Gels Without Staining
  Analytical Biochemistry. Mar, 2004  |   Pubmed ID: 14769330
• Trp-999 of Beta-galactosidase (Escherichia Coli) is a Key Residue for Binding, Catalysis, and Synthesis of Allolactose, the Natural Lac Operon Inducer
  Biochemistry. Feb, 2003  |   Pubmed ID: 12578395
• The Light-induced Reactions of Tryptophan with Halocompounds
  Photochemistry and Photobiology. Apr, 2002  |   Pubmed ID: 12003125
• Comparative Genomics of Closely Related Salmonellae
  Trends in Microbiology. Feb, 2002  |   Pubmed ID: 11827811
• Visualization of Proteins in Acrylamide Gels Using Ultraviolet Illumination
  Analytical Biochemistry. Feb, 2002  |   Pubmed ID: 11811971