Stephanie D. Byrum

Publications

• Severe Acute Respiratory Syndrome Coronavirus-2 Lambda Variant Collected from a Child from Arkansas and Sequenced
  Microbiology Resource Announcements. Feb, 2023  |   Pubmed ID: 36779742
• Expression of Integrin β-7 is Epigenetically Enhanced in Multiple Myeloma Subgroups with High-risk Cytogenetics
  Clinical Epigenetics. Feb, 2023  |   Pubmed ID: 36737807
• Neoplastic Signatures: Comparative Proteomics of Canine Hepatobiliary Neuroendocrine Tumors to Normal Niche Tissue
  PloS One. 2023  |   Pubmed ID: 36696389
• Repurposing Live Attenuated Trivalent MMR Vaccine As Cost-effective Cancer Immunotherapy
  Frontiers in Oncology. 2022  |   Pubmed ID: 36457491
• In Vivo Transcriptional Analysis of Mice Infected with Leishmania Major Unveils Cellular Heterogeneity and Altered Transcriptomic Profiling at Single-cell Resolution
  PLoS Neglected Tropical Diseases. Jul, 2022  |   Pubmed ID: 35789215
• Effect of Excess Weight and Insulin Resistance on DNA Methylation in Prepubertal Children
  Scientific Reports. May, 2022  |   Pubmed ID: 35589784
• Discovery of a Dual WDR5 and Ikaros PROTAC Degrader As an Anti-cancer Therapeutic
  Oncogene. Jun, 2022  |   Pubmed ID: 35525905
• Proteomic Profiling of Tear Fluid As a Promising Non-invasive Screening Test for Colon Cancer
  American Journal of Surgery. Jul, 2022  |   Pubmed ID: 35354531
• Deficiency of N-glycanase 1 Perturbs Neurogenesis and Cerebral Development Modeled by Human Organoids
  Cell Death & Disease. Mar, 2022  |   Pubmed ID: 35322011
• Circulating Exosomal MicroRNAs As Predictive Biomarkers of Neoadjuvant Chemotherapy Response in Breast Cancer
  Current Oncology (Toronto, Ont.). Jan, 2022  |   Pubmed ID: 35200555
• Proteomics Indicates Lactate Dehydrogenase Is Prognostic in Acetaminophen-Induced Acute Liver Failure Patients and Reveals Altered Signaling Pathways
  Toxicological Sciences : an Official Journal of the Society of Toxicology. Apr, 2022  |   Pubmed ID: 35172013
• Ionizing Radiation Activates Mitochondrial Function in Osteoclasts and Causes Bone Loss in Young Adult Male Mice
  International Journal of Molecular Sciences. Jan, 2022  |   Pubmed ID: 35054859
• A NSD3-targeted PROTAC Suppresses NSD3 and CMyc Oncogenic Nodes in Cancer Cells
  Cell Chemical Biology. Mar, 2022  |   Pubmed ID: 34469831
• HIF-α Activation Impacts Macrophage Function During Murine Infection
  Pathogens (Basel, Switzerland). Dec, 2021  |   Pubmed ID: 34959539
• The Effects of 5-Fluorouracil/Leucovorin Chemotherapy on Cognitive Function in Male Mice
  Frontiers in Molecular Biosciences. 2021  |   Pubmed ID: 34778377
• Raman Spectroscopy and Machine Learning Reveals Early Tumor Microenvironmental Changes Induced by Immunotherapy
  Cancer Research. Nov, 2021  |   Pubmed ID: 34645610
• Phosphoproteomics Provides Novel Insights into the Response of Primary Acute Lymphoblastic Leukemia Cells to Microtubule Depolymerization in G1 Phase of the Cell Cycle
  ACS Omega. Sep, 2021  |   Pubmed ID: 34604676
• Anti-PD-1/L1 Lead-in Before MAPK Inhibitor Combination Maximizes Antitumor Immunity and Efficacy
  Cancer Cell. Oct, 2021  |   Pubmed ID: 34416167
• Phase Separation Drives Aberrant Chromatin Looping and Cancer Development
  Nature. Jul, 2021  |   Pubmed ID: 34163069
• Multi-omics Data Integration Reveals Correlated Regulatory Features of Triple Negative Breast Cancer
  Molecular Omics. Oct, 2021  |   Pubmed ID: 34142686
• PTMViz: a Tool for Analyzing and Visualizing Histone Post Translational Modification Data
  BMC Bioinformatics. May, 2021  |   Pubmed ID: 34039258
• PHF19 Inhibition As a Therapeutic Target in Multiple Myeloma
  Current Research in Translational Medicine. Jul, 2021  |   Pubmed ID: 33894670
• Inhibition of Tryptophan 2,3-dioxygenase Impairs DNA Damage Tolerance and Repair in Glioma Cells
  NAR Cancer. Jun, 2021  |   Pubmed ID: 33870196
• Cistrome Analysis of YY1 Uncovers a Regulatory Axis of YY1:BRD2/4-PFKP During Tumorigenesis of Advanced Prostate Cancer
  Nucleic Acids Research. May, 2021  |   Pubmed ID: 33849067
• A Conserved BAH Module Within Mammalian BAHD1 Connects H3K27me3 to Polycomb Gene Silencing
  Nucleic Acids Research. May, 2021  |   Pubmed ID: 33823544
• Cognitive Impairment Resulting from Treatment with Docetaxel, Doxorubicin, and Cyclophosphamide
  Brain Research. 06, 2021  |   Pubmed ID: 33705788
• Dysbiotic Stress Increases the Sensitivity of the Tumor Vasculature to Radiotherapy and C-Met Inhibitors
  Angiogenesis. Aug, 2021  |   Pubmed ID: 33629198
• Differences in Cell Death in Methionine Versus Cysteine Depletion
  Environmental and Molecular Mutagenesis. Mar, 2021  |   Pubmed ID: 33615565
• ZMYND11-MBTD1 Induces Leukemogenesis Through Hijacking NuA4/TIP60 Acetyltransferase Complex and a PWWP-mediated Chromatin Association Mechanism
  Nature Communications. Feb, 2021  |   Pubmed ID: 33594072
• Control of the Anterior Pituitary Cell Lineage Regulator POU1F1 by the Stem Cell Determinant Musashi
  Endocrinology. Mar, 2021  |   Pubmed ID: 33373440
• Multi-omics Data Integration Considerations and Study Design for Biological Systems and Disease
  Molecular Omics. Apr, 2021  |   Pubmed ID: 33347526
• Durable Suppression of Acquired MEK Inhibitor Resistance in Cancer by Sequestering MEK from ERK and Promoting Antitumor T-cell Immunity
  Cancer Discovery. Mar, 2021  |   Pubmed ID: 33318037
• SarA Plays a Predominant Role in Controlling the Production of Extracellular Proteases in the Diverse Clinical Isolates of LAC and UAMS-1
  Virulence. Dec, 2020  |   Pubmed ID: 33258416
• Activation-induced Cytidine Deaminase Localizes to G-quadruplex Motifs at Mutation Hotspots in Lymphoma
  NAR Cancer. Dec, 2020  |   Pubmed ID: 33094287
• ProteiNorm - A User-Friendly Tool for Normalization and Analysis of TMT and Label-Free Protein Quantification
  ACS Omega. Oct, 2020  |   Pubmed ID: 33073088
• Epigenetic Control of Protects Tumor-Infiltrating Lymphocytes from Metabolic Exhaustion
  Cancer Research. Nov, 2020  |   Pubmed ID: 33004350
• Spaceflight Induces Oxidative Damage to Blood-brain Barrier Integrity in a Mouse Model
  FASEB Journal : Official Publication of the Federation of American Societies for Experimental Biology. Nov, 2020  |   Pubmed ID: 32981077
• Cranial Irradiation Impairs Juvenile Social Memory and Modulates Hippocampal Physiology
  Brain Research. 12, 2020  |   Pubmed ID: 32896524
• Proteogenomic Analysis of Melanoma Brain Metastases from Distinct Anatomical Sites Identifies Pathways of Metastatic Progression
  Acta Neuropathologica Communications. Sep, 2020  |   Pubmed ID: 32891176
• Neonatal Diet Impacts Circulatory MiRNA Profile in a Porcine Model
  Frontiers in Immunology. 2020  |   Pubmed ID: 32655560
• ProteoViz: a Tool for the Analysis and Interactive Visualization of Phosphoproteomics Data
  Molecular Omics. Aug, 2020  |   Pubmed ID: 32347222
• Assessing the Effects of Redox Modifier MnTnBuOE-2-PyP 5+ on Cognition and Hippocampal Physiology Following Doxorubicin, Cyclophosphamide, and Paclitaxel Treatment
  International Journal of Molecular Sciences. Mar, 2020  |   Pubmed ID: 32182883
• Respiratory Defects in the KO Mouse Model of Osteogenesis Imperfecta
  American Journal of Physiology. Lung Cellular and Molecular Physiology. Apr, 2020  |   Pubmed ID: 32022592
• Exploiting Correlations Between Protein Abundance and the Functional Status of and To Identify Virulence Factors of Potential Importance in the Pathogenesis of Osteomyelitis
  ACS Infectious Diseases. Feb, 2020  |   Pubmed ID: 31722523
• Cold Storage Increases Albumin and Advanced Glycation-End Product-Albumin Levels in Kidney Transplants: A Possible Cause for Exacerbated Renal Damage
  Transplantation Direct. Jun, 2019  |   Pubmed ID: 31723591
• Continuous Developmental and Early Life Trichloroethylene Exposure Promoted DNA Methylation Alterations in Polycomb Protein Binding Sites in Effector/Memory CD4 T Cells
  Frontiers in Immunology. 2019  |   Pubmed ID: 31555266
• Proteomic Measures of Gamma Oscillations
  Heliyon. Aug, 2019  |   Pubmed ID: 31497668
• Effect of Sulforaphane and 5-Aza-2'-Deoxycytidine on Melanoma Cell Growth
  Medicines (Basel, Switzerland). Jun, 2019  |   Pubmed ID: 31252639
• Characterization of Mouse Ocular Response to a 35-day Spaceflight Mission: Evidence of Blood-retinal Barrier Disruption and Ocular Adaptations
  Scientific Reports. 06, 2019  |   Pubmed ID: 31160660
• Musashi Interaction with Poly(A)-binding Protein is Required for Activation of Target MRNA Translation
  The Journal of Biological Chemistry. Jul, 2019  |   Pubmed ID: 31152063
• Local and Relayed Effects of Deep Brain Stimulation of the Pedunculopontine Nucleus
  Brain Sciences. Mar, 2019  |   Pubmed ID: 30889866
• Proteomic Characterization of the Arsenic Response Locus in S. Cerevisiae
  Epigenetics. Feb, 2019  |   Pubmed ID: 30739529
• Metaproteomics Reveals Potential Mechanisms by Which Dietary Resistant Starch Supplementation Attenuates Chronic Kidney Disease Progression in Rats
  PloS One. 2019  |   Pubmed ID: 30699108
• Loss of E-Cadherin Inhibits CD103 Antitumor Activity and Reduces Checkpoint Blockade Responsiveness in Melanoma
  Cancer Research. Mar, 2019  |   Pubmed ID: 30674537
• RNA-Seq Analysis of Spinal Cord Tissues from HPFN1 Transgenic Mouse Model of ALS at Pre-symptomatic and End-Stages of Disease
  Scientific Reports. Sep, 2018  |   Pubmed ID: 30213953
• Label-Free Proteomic Approach to Characterize Protease-Dependent and -Independent Effects of SarA Inactivation on the Staphylococcus Aureus Exoproteome
  Journal of Proteome Research. Oct, 2018  |   Pubmed ID: 30209945
• Impact of Spaceflight and Artificial Gravity on the Mouse Retina: Biochemical and Proteomic Analysis
  International Journal of Molecular Sciences. Aug, 2018  |   Pubmed ID: 30154332
• Proteomic Changes in Mouse Spleen After Radiation-Induced Injury and Its Modulation by Gamma-Tocotrienol
  Radiation Research. Nov, 2018  |   Pubmed ID: 30070965
• Vulvar Squamous Cell Carcinoma Aggressiveness is Associated with Differential Expression of Collagen and STAT1
  Clinical Proteomics. 2017  |   Pubmed ID: 29225558
• Indicators of Responsiveness to Immune Checkpoint Inhibitors
  Scientific Reports. Apr, 2017  |   Pubmed ID: 28400597
• Time- and Radiation-dose Dependent Changes in the Plasma Proteome After Total Body Irradiation of Non-human Primates: Implications for Biomarker Selection
  PloS One. 2017  |   Pubmed ID: 28350824
• 1,3-Butadiene-induced Mitochondrial Dysfunction is Correlated with Mitochondrial CYP2E1 Activity in Collaborative Cross Mice
  Toxicology. Mar, 2017  |   Pubmed ID: 28082109
• Impact of SarA and Phenol-Soluble Modulins on the Pathogenesis of Osteomyelitis in Diverse Clinical Isolates of Staphylococcus Aureus
  Infection and Immunity. Sep, 2016  |   Pubmed ID: 27354444
• ATXN7L3 and ENY2 Coordinate Activity of Multiple H2B Deubiquitinases Important for Cellular Proliferation and Tumor Growth
  Molecular Cell. 05, 2016  |   Pubmed ID: 27132940
• DNA Methylation on N(6)-adenine in Mammalian Embryonic Stem Cells
  Nature. Apr, 2016  |   Pubmed ID: 27027282
• A Quantitative Proteomic Analysis of Urine from Gamma-Irradiated Non-Human Primates
  Journal of Proteomics & Bioinformatics. 2016  |   Pubmed ID: 26962295
• Quantitative Histone Mass Spectrometry Identifies Elevated Histone H3 Lysine 27 (Lys27) Trimethylation in Melanoma
  Molecular & Cellular Proteomics : MCP. Mar, 2016  |   Pubmed ID: 26621846
• Identification of Viral and Host Proteins That Interact with Murine Gammaherpesvirus 68 Latency-Associated Nuclear Antigen During Lytic Replication: a Role for Hsc70 in Viral Replication
  Journal of Virology. Feb, 2016  |   Pubmed ID: 26581985
• Purification of Specific Chromatin Loci for Proteomic Analysis
  Methods in Molecular Biology (Clifton, N.J.). 2015  |   Pubmed ID: 25311124
• A CRISPR-based Approach for Proteomic Analysis of a Single Genomic Locus
  Epigenetics. Sep, 2014  |   Pubmed ID: 25147920
• A PWWP Domain-containing Protein Targets the NuA3 Acetyltransferase Complex Via Histone H3 Lysine 36 Trimethylation to Coordinate Transcriptional Elongation at Coding Regions
  Molecular & Cellular Proteomics : MCP. Nov, 2014  |   Pubmed ID: 25104842
• Mitotic Phosphorylation of Histone H3 Threonine 80
  Cell Cycle (Georgetown, Tex.). 2014  |   Pubmed ID: 24275038
• A Proteomic Study of Human Merkel Cell Carcinoma
  Journal of Proteomics & Bioinformatics. Nov, 2013  |   Pubmed ID: 25284964
• Purification of a Specific Native Genomic Locus for Proteomic Analysis
  Nucleic Acids Research. Nov, 2013  |   Pubmed ID: 24030711
• Quantitative Proteomics Identifies Activation of Hallmark Pathways of Cancer in Patient Melanoma
  Journal of Proteomics & Bioinformatics. Mar, 2013  |   Pubmed ID: 23976835
• Identification of PTHrP(12-48) As a Plasma Biomarker Associated with Breast Cancer Bone Metastasis
  Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association for Cancer Research, Cosponsored by the American Society of Preventive Oncology. May, 2013  |   Pubmed ID: 23462923
• ChAP-MS: a Method for Identification of Proteins and Histone Posttranslational Modifications at a Single Genomic Locus
  Cell Reports. Jul, 2012  |   Pubmed ID: 22840409
• Proteomic Technologies for the Study of Osteosarcoma
  Sarcoma. 2012  |   Pubmed ID: 22550414
• Quantitative Analysis of Histone Exchange for Transcriptionally Active Chromatin
  Journal of Clinical Bioinformatics. 2011  |   Pubmed ID: 21884633
• Accurate and Sensitive Quantitation of the Dynamic Heat Shock Proteome Using Tandem Mass Tags
  Journal of Proteome Research.   |   Pubmed ID: 32027144