Steven B. Haase Department of Biology Duke University Biography Publications Institution JoVE Articles Steven B. Haase has not added a biography. If you are Steven B. Haase and would like to personalize this page please email our Author Liaison for assistance. Publications The Parasite Intraerythrocytic Cycle and Human Circadian Cycle Are Coupled During Malaria Infection Proceedings of the National Academy of Sciences of the United States of America. Jun, 2023 | Pubmed ID: 37279274 Learning Perturbation-inducible Cell States from Observability Analysis of Transcriptome Dynamics Nature Communications. May, 2023 | Pubmed ID: 37253722 Robustness and Reproducibility of Simple and Complex Synthetic Logic Circuit Designs Using a DBTL Loop Synthetic Biology (Oxford, England). 2023 | Pubmed ID: 37073283 Highly-automated, High-throughput Replication of Yeast-based Logic Circuit Design Assessments Synthetic Biology (Oxford, England). 2022 | Pubmed ID: 36285185 Experimental Guidance for Discovering Genetic Networks Through Hypothesis Reduction on Time Series PLoS Computational Biology. Oct, 2022 | Pubmed ID: 36215333 Predictive Values of Time-dense SARS-CoV-2 Wastewater Analysis in University Campus Buildings The Science of the Total Environment. Aug, 2022 | Pubmed ID: 35469858 Conservation of Dynamic Characteristics of Transcriptional Regulatory Elements in Periodic Biological Processes BMC Bioinformatics. Mar, 2022 | Pubmed ID: 35300586 Association of COVID-19 Quarantine Duration and Postquarantine Transmission Risk in 4 University Cohorts JAMA Network Open. Feb, 2022 | Pubmed ID: 35212750 Assessment of Simulated Surveillance Testing and Quarantine in a SARS-CoV-2-Vaccinated Population of Students on a University Campus JAMA Health Forum. Oct, 2021 | Pubmed ID: 35977169 Inference of Gene Regulatory Network Uncovers the Linkage Between Circadian Clock and Crassulacean Acid Metabolism in Cells. 08, 2021 | Pubmed ID: 34571864 Improved Data Sets and Evaluation Methods for the Automatic Prediction of DNA-binding Proteins Bioinformatics (Oxford, England). Aug, 2021 | Pubmed ID: 34415301 An Intrinsic Oscillator Drives the Blood Stage Cycle of the Malaria Parasite Science (New York, N.Y.). 05, 2020 | Pubmed ID: 32409472 Using Extremal Events to Characterize Noisy Time Series Journal of Mathematical Biology. 04, 2020 | Pubmed ID: 32008103 The Cell-cycle Transcriptional Network Generates and Transmits a Pulse of Transcription Once Each Cell Cycle Cell Cycle (Georgetown, Tex.). 02, 2019 | Pubmed ID: 30668223 Layers of Regulation of Cell-cycle Gene Expression in the Budding Yeast Saccharomyces Cerevisiae Molecular Biology of the Cell. 11, 2018 | Pubmed ID: 30207828 Reconciling Conflicting Models for Global Control of Cell-cycle Transcription Cell Cycle (Georgetown, Tex.). Oct, 2017 | Pubmed ID: 28934013 Connecting Virulence Pathways to Cell-cycle Progression in the Fungal Pathogen Cryptococcus Neoformans Current Genetics. Oct, 2017 | Pubmed ID: 28265742 Investigating Conservation of the Cell-Cycle-Regulated Transcriptional Program in the Fungal Pathogen, Cryptococcus Neoformans PLoS Genetics. Dec, 2016 | Pubmed ID: 27918582 The Local Edge Machine: Inference of Dynamic Models of Gene Regulation Genome Biology. 10, 2016 | Pubmed ID: 27760556 Checkpoints Couple Transcription Network Oscillator Dynamics to Cell-cycle Progression Genome Biology. Sep, 2014 | Pubmed ID: 25200947 Analyzing Transcription Dynamics During the Budding Yeast Cell Cycle Methods in Molecular Biology (Clifton, N.J.). 2014 | Pubmed ID: 24906319 Cell Cycle-regulated Transcription: Effectively Using a Genomics Toolbox Methods in Molecular Biology (Clifton, N.J.). 2014 | Pubmed ID: 24906306 Topology and Control of the Cell-cycle-regulated Transcriptional Circuitry Genetics. Jan, 2014 | Pubmed ID: 24395825 Design and Analysis of Large-scale Biological Rhythm Studies: a Comparison of Algorithms for Detecting Periodic Signals in Biological Data Bioinformatics (Oxford, England). Dec, 2013 | Pubmed ID: 24058056 Branching Process Deconvolution Algorithm Reveals a Detailed Cell-cycle Transcription Program Proceedings of the National Academy of Sciences of the United States of America. Mar, 2013 | Pubmed ID: 23388635 New and Redesigned PRS Plasmid Shuttle Vectors for Genetic Manipulation of Saccharomycescerevisiae G3 (Bethesda, Md.). May, 2012 | Pubmed ID: 22670222 Parametric Modeling of Cellular State Transitions As Measured with Flow Cytometry BMC Bioinformatics. Apr, 2012 | Pubmed ID: 22537009 Populous: a Tool for Building OWL Ontologies from Templates BMC Bioinformatics. Jan, 2012 | Pubmed ID: 22373396 Cyclin-dependent Kinases Are Regulators and Effectors of Oscillations Driven by a Transcription Factor Network Molecular Cell. Mar, 2012 | Pubmed ID: 22306294 A Generalized Model for Multi-marker Analysis of Cell Cycle Progression in Synchrony Experiments Bioinformatics (Oxford, England). Jul, 2011 | Pubmed ID: 21685084 B-cyclin/CDKs Regulate Mitotic Spindle Assembly by Phosphorylating Kinesins-5 in Budding Yeast PLoS Genetics. May, 2010 | Pubmed ID: 20463882 Cohesin: It's Not Just for Chromosomes Anymore Cell Cycle (Georgetown, Tex.). May, 2010 | Pubmed ID: 20436287 A Branching Process Model for Flow Cytometry and Budding Index Measurements in Cell Synchrony Experiments The Annals of Applied Statistics. 2009 | Pubmed ID: 21853014 Transcription Networks and Cyclin/CDKs: the Yin and Yang of Cell Cycle Oscillators Cell Cycle (Georgetown, Tex.). Sep, 2008 | Pubmed ID: 18758238 Intrinsic and Cyclin-dependent Kinase-dependent Control of Spindle Pole Body Duplication in Budding Yeast Molecular Biology of the Cell. Aug, 2008 | Pubmed ID: 18480404 Global Control of Cell-cycle Transcription by Coupled CDK and Network Oscillators Nature. Jun, 2008 | Pubmed ID: 18463633 Microtubule Organization: Cell Shape is Destiny Current Biology : CB. Apr, 2007 | Pubmed ID: 17407755 A Probabilistic Model for Cell Cycle Distributions in Synchrony Experiments Cell Cycle (Georgetown, Tex.). Feb, 2007 | Pubmed ID: 17329975 Distinct Mechanisms Control the Stability of the Related S-phase Cyclins Clb5 and Clb6 Molecular and Cellular Biology. Mar, 2006 | Pubmed ID: 16508019 Cell Cycle Analysis of Budding Yeast Using SYTOX Green Current Protocols in Cytometry. Nov, 2004 | Pubmed ID: 18770800 Alignment of Synchronized Time-Series Data Using the Characterizing Loss of Cell Cycle Synchrony Model for Cross-Experiment Comparisons (Video) | JoVE Sophia A. Campione1, Christina M. Kelliher2, David A. Orlando3, Trung Q. Tran4, Steven B. Haase1 1Department of Biology, Duke University, 2Department of Biology, University of Massachusetts, 3Orlando Data Science LLC, 4Department of Computer Science, Duke University JoVE 65466 Biology Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline Robert C. Moseley1, Sophia Campione1, Bree Cummins2, Francis Motta3, Steven B. Haase1 1Department of Biology, Duke University, 2Department of Mathematical Sciences, Montana State University, 3Department of Mathematical Sciences, Florida Atlantic University JoVE 63084 Biology
Alignment of Synchronized Time-Series Data Using the Characterizing Loss of Cell Cycle Synchrony Model for Cross-Experiment Comparisons (Video) | JoVE Sophia A. Campione1, Christina M. Kelliher2, David A. Orlando3, Trung Q. Tran4, Steven B. Haase1 1Department of Biology, Duke University, 2Department of Biology, University of Massachusetts, 3Orlando Data Science LLC, 4Department of Computer Science, Duke University JoVE 65466 Biology
Inherent Dynamics Visualizer, an Interactive Application for Evaluating and Visualizing Outputs from a Gene Regulatory Network Inference Pipeline Robert C. Moseley1, Sophia Campione1, Bree Cummins2, Francis Motta3, Steven B. Haase1 1Department of Biology, Duke University, 2Department of Mathematical Sciences, Montana State University, 3Department of Mathematical Sciences, Florida Atlantic University JoVE 63084 Biology
