Tomoki Chiba

Publications

• Complementary Critical Functions of Zfy1 and Zfy2 in Mouse Spermatogenesis and Reproduction
  PLoS Genetics. Jan, 2017  |   Pubmed ID: 28114340
• CACUL1/CAC1 Attenuates P53 Activity Through PML Post-translational Modification
  Biochemical and Biophysical Research Communications. Jan, 2017  |   Pubmed ID: 27889610
• Structural Changes in Molluscan Community over a 15-Year Period Before and After the 2011 Great East Japan Earthquake and Subsequent Tsunami Around Matsushima Bay, Miyagi Prefecture, Northeastern Japan
  PloS One. 2016  |   Pubmed ID: 27936182
• USP15 Stabilizes the Transcription Factor Nrf1 in the Nucleus, Promoting the Proteasome Gene Expression
  Biochemical and Biophysical Research Communications. Sep, 2016  |   Pubmed ID: 27416755
• SCFFbl12 Increases P21Waf1/Cip1 Expression Level Through Atypical Ubiquitin Chain Synthesis
  Molecular and Cellular Biology. Aug, 2016  |   Pubmed ID: 27215384
• Proteasome Activators, PA28γ and PA200, Play Indispensable Roles in Male Fertility
  Scientific Reports. Mar, 2016  |   Pubmed ID: 27003159
• KIAA0368-deficiency Affects Disassembly of 26S Proteasome Under Oxidative Stress Condition
  Journal of Biochemistry. Jun, 2016  |   Pubmed ID: 26802743
• CACUL1/CAC1 Regulates the Antioxidant Response by Stabilizing Nrf2
  Scientific Reports. Aug, 2015  |   Pubmed ID: 26238671
• TALEN-Mediated Gene Disruption on Y Chromosome Reveals Critical Role of EIF2S3Y in Mouse Spermatogenesis
  Stem Cells and Development. May, 2015  |   Pubmed ID: 25579647
• Transcription Activator-like Effector Nuclease-mediated Transduction of Exogenous Gene into IL2RG Locus
  Scientific Reports. May, 2014  |   Pubmed ID: 24853770
• Role of Nuclear IκBs in Inflammation Regulation
  Biomolecular Concepts. Apr, 2013  |   Pubmed ID: 25436575
• Myeloma Overexpressed 2 (Myeov2) Regulates L11 Subnuclear Localization Through Nedd8 Modification
  PloS One. 2013  |   Pubmed ID: 23776465
• Acetylation-mediated Proteasomal Degradation of Core Histones During DNA Repair and Spermatogenesis
  Cell. May, 2013  |   Pubmed ID: 23706739
• Brap2 Regulates Temporal Control of NF-κB Localization Mediated by Inflammatory Response
  PloS One. 2013  |   Pubmed ID: 23554956
• Sepsis-induced Hypercytokinemia and Lymphocyte Apoptosis in Aging-accelerated Klotho Knockout Mice
  Shock (Augusta, Ga.). Mar, 2013  |   Pubmed ID: 23364432
• Reduction of Immunocompetent T Cells Followed by Prolonged Lymphopenia in Severe Sepsis in the Elderly
  Critical Care Medicine. Mar, 2013  |   Pubmed ID: 23328259
• Spermatogenesis Arrest Caused by Conditional Deletion of Hsp90α in Adult Mice
  Biology Open. Oct, 2012  |   Pubmed ID: 23213375
• Reciprocal Control of G1-phase Progression is Required for Th-POK/Runx3-mediated CD4/8 Thymocyte Cell Fate Decision
  Journal of Immunology (Baltimore, Md. : 1950). Nov, 2012  |   Pubmed ID: 23018457
• A Method for Inducing Antigen-specific IgG Production by in Vitro Immunization
  Journal of Immunological Methods. Dec, 2012  |   Pubmed ID: 22974834
• Guidelines for the Use and Interpretation of Assays for Monitoring Autophagy
  Autophagy. Apr, 2012  |   Pubmed ID: 22966490
• Smad7-deficient Mice Show Growth Retardation with Reduced Viability
  Journal of Biochemistry. Jun, 2012  |   Pubmed ID: 22383537
• IκBL, a Novel Member of the Nuclear IκB Family, Inhibits Inflammatory Cytokine Expression
  FEBS Letters. Nov, 2011  |   Pubmed ID: 22024480
• Cell Activation by CpG ODN Leads to Improved Electrofusion in Hybridoma Production
  Journal of Immunological Methods. Oct, 2011  |   Pubmed ID: 21878337
• Ubiquitin Ligase Activity of Cul3-KLHL7 Protein is Attenuated by Autosomal Dominant Retinitis Pigmentosa Causative Mutation
  The Journal of Biological Chemistry. Sep, 2011  |   Pubmed ID: 21828050
• PA28 and the Proteasome Immunosubunits Play a Central and Independent Role in the Production of MHC Class I-binding Peptides in Vivo
  European Journal of Immunology. Apr, 2011  |   Pubmed ID: 21360704
• Interplay of Transcription Factors in T-cell Differentiation and Function: the Role of Runx
  Immunology. Feb, 2011  |   Pubmed ID: 21091910
• Bioluminescence Assay for Detecting Cell Surface Membrane Protein Expression
  Assay and Drug Development Technologies. Feb, 2011  |   Pubmed ID: 20836709
• Induction of Th1-biased Cytokine Production by Alpha-carba-GalCer, a Neoglycolipid Ligand for NKT Cells
  International Immunology. Apr, 2010  |   Pubmed ID: 20181652
• The Mechanism of Poly-NEDD8 Chain Formation in Vitro
  Biochemical and Biophysical Research Communications. Apr, 2009  |   Pubmed ID: 19245792
• [Recognition of CD1d/glycolipid Antigen Complex by NKT Cells and Mechanisms in Immune Regulation]
  Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. Sep, 2008  |   Pubmed ID: 21089371
• PML Activates Transcription by Protecting HIPK2 and P300 from SCFFbx3-mediated Degradation
  Molecular and Cellular Biology. Dec, 2008  |   Pubmed ID: 18809579
• Hsp90-mediated Assembly of the 26 S Proteasome is Involved in Major Histocompatibility Complex Class I Antigen Processing
  The Journal of Biological Chemistry. Oct, 2008  |   Pubmed ID: 18703510
• A New Ubiquitin Ligase Involved in P57KIP2 Proteolysis Regulates Osteoblast Cell Differentiation
  EMBO Reports. Sep, 2008  |   Pubmed ID: 18660753
• Allele-selective Effect of PA28 in MHC Class I Antigen Processing
  Journal of Immunology (Baltimore, Md. : 1950). Aug, 2008  |   Pubmed ID: 18641301
• Muscle RING-finger Protein-1 (MuRF1) As a Connector of Muscle Energy Metabolism and Protein Synthesis
  Journal of Molecular Biology. Mar, 2008  |   Pubmed ID: 18222470
• SCRAPPER-dependent Ubiquitination of Active Zone Protein RIM1 Regulates Synaptic Vesicle Release
  Cell. Sep, 2007  |   Pubmed ID: 17803915
• Dioxin Receptor is a Ligand-dependent E3 Ubiquitin Ligase
  Nature. Mar, 2007  |   Pubmed ID: 17392787
• TBP-interacting Protein 120B (TIP120B)/cullin-associated and Neddylation-dissociated 2 (CAND2) Inhibits SCF-dependent Ubiquitination of Myogenin and Accelerates Myogenic Differentiation
  The Journal of Biological Chemistry. Mar, 2007  |   Pubmed ID: 17242400
• Direct Interactions Between NEDD8 and Ubiquitin E2 Conjugating Enzymes Upregulate Cullin-based E3 Ligase Activity
  Nature Structural & Molecular Biology. Feb, 2007  |   Pubmed ID: 17206147
• Isolation and Characterization of Phage-displayed Single Chain Antibodies Recognizing Nonreducing Terminal Mannose Residues. 1. A New Strategy for Generation of Anti-carbohydrate Antibodies
  Biochemistry. Jan, 2007  |   Pubmed ID: 17198396
• SUMO-specific Protease SUSP4 Positively Regulates P53 by Promoting Mdm2 Self-ubiquitination
  Nature Cell Biology. Dec, 2006  |   Pubmed ID: 17086174
• Decline of Striatal Dopamine Release in Parkin-deficient Mice Shown by Ex Vivo Autoradiography
  Journal of Neuroscience Research. Nov, 2006  |   Pubmed ID: 16941649
• [Physiological Role in Constitutive Autophagy]
  Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. Aug, 2006  |   Pubmed ID: 16922430
• [NEDD8 Conjugation System]
  Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. Aug, 2006  |   Pubmed ID: 16922375
• Analysis of Knock-out Mice to Determine the Role of HPC-1/syntaxin 1A in Expressing Synaptic Plasticity
  The Journal of Neuroscience : the Official Journal of the Society for Neuroscience. May, 2006  |   Pubmed ID: 16723534
• Loss of Autophagy in the Central Nervous System Causes Neurodegeneration in Mice
  Nature. Jun, 2006  |   Pubmed ID: 16625205
• Depletion of Hsp90beta Induces Multiple Defects in B Cell Receptor Signaling
  The Journal of Biological Chemistry. Jun, 2006  |   Pubmed ID: 16617057
• The Ubiquitin-proteasome System Plays Essential Roles in Presenting an 8-mer CTL Epitope Expressed in APC to Corresponding CD8+ T Cells
  International Immunology. May, 2006  |   Pubmed ID: 16569681
• BTB Domain-containing Speckle-type POZ Protein (SPOP) Serves As an Adaptor of Daxx for Ubiquitination by Cul3-based Ubiquitin Ligase
  The Journal of Biological Chemistry. May, 2006  |   Pubmed ID: 16524876
• The Involvement of Immunoproteasomes in Induction of MHC Class I-restricted Immunity Targeting Toxoplasma SAG1
  Microbes and Infection. Apr, 2006  |   Pubmed ID: 16515877
• Excess Peroxisomes Are Degraded by Autophagic Machinery in Mammals
  The Journal of Biological Chemistry. Feb, 2006  |   Pubmed ID: 16332691
• 14-3-3eta is a Novel Regulator of Parkin Ubiquitin Ligase
  The EMBO Journal. Jan, 2006  |   Pubmed ID: 16096643
• [Regulation of the Protein Degradation Pathway by the Ubiquitin Family: Its Implication in Neurodegenerative Diseases]
  Rinsho Shinkeigaku = Clinical Neurology. Nov, 2005  |   Pubmed ID: 16447778
• In Vitro Systems for NEDD8 Conjugation by Ubc12
  Methods in Enzymology. 2005  |   Pubmed ID: 16275320
• [Biology of the Reversible Protein Ubiquitination]
  Seikagaku. The Journal of Japanese Biochemical Society. Jun, 2005  |   Pubmed ID: 16022430
• Multiple Roles of Rbx1 in the VBC-Cul2 Ubiquitin Ligase Complex
  Genes to Cells : Devoted to Molecular & Cellular Mechanisms. Jul, 2005  |   Pubmed ID: 15966899
• Differential Expression Regulation of the Alpha and Beta Subunits of the PA28 Proteasome Activator in Mature Dendritic Cells
  Journal of Immunology (Baltimore, Md. : 1950). Jun, 2005  |   Pubmed ID: 15944286
• Common Anti-apoptotic Roles of Parkin and Alpha-synuclein in Human Dopaminergic Cells
  Biochemical and Biophysical Research Communications. Jun, 2005  |   Pubmed ID: 15896322
• Impairment of Starvation-induced and Constitutive Autophagy in Atg7-deficient Mice
  The Journal of Cell Biology. May, 2005  |   Pubmed ID: 15866887
• DDB2, the Xeroderma Pigmentosum Group E Gene Product, is Directly Ubiquitylated by Cullin 4A-based Ubiquitin Ligase Complex
  DNA Repair. May, 2005  |   Pubmed ID: 15811626
• Regulation of Anaphylactic Responses by Phosphatidylinositol Phosphate Kinase Type I {alpha}
  The Journal of Experimental Medicine. Mar, 2005  |   Pubmed ID: 15767368
• Ligand-dependent Switching of Ubiquitin-proteasome Pathways for Estrogen Receptor
  The EMBO Journal. Dec, 2004  |   Pubmed ID: 15538384
• Expression of HIV-1 Accessory Protein Vif is Controlled Uniquely to Be Low and Optimal by Proteasome Degradation
  Microbes and Infection. Jul, 2004  |   Pubmed ID: 15374000
• Oxidative Stress Sensor Keap1 Functions As an Adaptor for Cul3-based E3 Ligase to Regulate Proteasomal Degradation of Nrf2
  Molecular and Cellular Biology. Aug, 2004  |   Pubmed ID: 15282312
• Ubiquitin-fusion Degradation Pathway Plays an Indispensable Role in Naked DNA Vaccination with a Chimeric Gene Encoding a Syngeneic Cytotoxic T Lymphocyte Epitope of Melanocyte and Green Fluorescent Protein
  Immunology. Aug, 2004  |   Pubmed ID: 15270727
• Cullin-based Ubiquitin Ligase and Its Control by NEDD8-conjugating System
  Current Protein & Peptide Science. Jun, 2004  |   Pubmed ID: 15180522
• A Novel Protein-conjugating System for Ufm1, a Ubiquitin-fold Modifier
  The EMBO Journal. May, 2004  |   Pubmed ID: 15071506
• Structural Basis of Sugar-recognizing Ubiquitin Ligase
  Nature Structural & Molecular Biology. Apr, 2004  |   Pubmed ID: 14990996
• The Fusion Oncoprotein PML-RARalpha Induces Endoplasmic Reticulum (ER)-associated Degradation of N-CoR and ER Stress
  The Journal of Biological Chemistry. Mar, 2004  |   Pubmed ID: 14701861
• Proteasome Activator PA28gamma-dependent Nuclear Retention and Degradation of Hepatitis C Virus Core Protein
  Journal of Virology. Oct, 2003  |   Pubmed ID: 12970408
• Fbs2 is a New Member of the E3 Ubiquitin Ligase Family That Recognizes Sugar Chains
  The Journal of Biological Chemistry. Oct, 2003  |   Pubmed ID: 12939278
• A Palmitoylated RING Finger Ubiquitin Ligase and Its Homologue in the Brain Membranes
  Journal of Neurochemistry. Aug, 2003  |   Pubmed ID: 12859687
• CHIP: a Quality-control E3 Ligase Collaborating with Molecular Chaperones
  The International Journal of Biochemistry & Cell Biology. May, 2003  |   Pubmed ID: 12672450
• Conditional Knockdown of Proteasomes Results in Cell-cycle Arrest and Enhanced Expression of Molecular Chaperones Hsp70 and Hsp40 in Chicken DT40 Cells
  The Journal of Biological Chemistry. May, 2003  |   Pubmed ID: 12594202
• E3 Ubiquitin Ligase That Recognizes Sugar Chains
  Nature. Jul, 2002  |   Pubmed ID: 12140560
• Two Distinct Pathways Mediated by PA28 and Hsp90 in Major Histocompatibility Complex Class I Antigen Processing
  The Journal of Experimental Medicine. Jul, 2002  |   Pubmed ID: 12119343
• Antagonistic Regulation of Myogenesis by Two Deubiquitinating Enzymes, UBP45 and UBP69
  Proceedings of the National Academy of Sciences of the United States of America. Jul, 2002  |   Pubmed ID: 12107281