Vitali Sintchenko Centre for Infectious Diseases and Microbiology-Public Health Westmead Hospital Biography Publications Institution JoVE Articles Vitali Sintchenko has not added a biography. If you are Vitali Sintchenko and would like to personalize this page please email our Author Liaison for assistance. Publications Genome Sequencing Links Persistent Outbreak of Legionellosis in Sydney to an Emerging Clone of Legionella Pneumophila ST211 Applied and Environmental Microbiology. Dec, 2017 | Pubmed ID: 29247056 Comparative Genomics of Australian and International Isolates of Salmonella Typhimurium: Correlation of Core Genome Evolution with CRISPR and Prophage Profiles Scientific Reports. Aug, 2017 | Pubmed ID: 28851865 Drug Resistance and Mycobacterium Tuberculosis Strain Diversity in TB/HIV Co-infected Patients in Ho Chi Minh City, Vietnam Journal of Global Antimicrobial Resistance. Sep, 2017 | Pubmed ID: 28743648 Francisella Tularensis Ssp. Holarctica in Ringtail Possums, Australia Emerging Infectious Diseases. 07, 2017 | Pubmed ID: 28628459 Genomic Heterogeneity of Salmonella Enterica Serovar Typhimurium Bacteriuria from Chronic Infection Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. Jul, 2017 | Pubmed ID: 28279807 Characterisation of the Bordetella Pertussis Secretome Under Different Media Journal of Proteomics. Mar, 2017 | Pubmed ID: 28242451 Evolution of Variable Number Tandem Repeats and Its Relationship with Genomic Diversity in Salmonella Typhimurium Frontiers in Microbiology. 2016 | Pubmed ID: 28082952 Transmission of Multi-drug Resistant Tuberculosis in Mongolia is Driven by Beijing Strains of Mycobacterium Tuberculosis Resistant to All First-line Drugs Tuberculosis (Edinburgh, Scotland). Dec, 2016 | Pubmed ID: 27865397 16S-23S Internal Transcribed Spacer Region PCR and Sequencer-Based Capillary Gel Electrophoresis Has Potential As an Alternative to High Performance Liquid Chromatography for Identification of Slowly Growing Nontuberculous Mycobacteria PloS One. 2016 | Pubmed ID: 27749897 Whole Genome Sequencing Demonstrates Limited Transmission Within Identified Mycobacterium Tuberculosis Clusters in New South Wales, Australia PloS One. 2016 | Pubmed ID: 27737005 SnpFilt: A Pipeline for Reference-free Assembly-based Identification of SNPs in Bacterial Genomes Computational Biology and Chemistry. 12, 2016 | Pubmed ID: 27647159 Whole Genome Sequencing of Salmonella Typhimurium Illuminates Distinct Outbreaks Caused by an Endemic Multi-locus Variable Number Tandem Repeat Analysis Type in Australia, 2014 BMC Microbiology. Sep, 2016 | Pubmed ID: 27629541 Better Colonisation of Newly Emerged Bordetella Pertussis in the Co-infection Mouse Model Study Vaccine. 07, 2016 | Pubmed ID: 27346304 Nontoxic Metal-Cyclam Complexes, a New Class of Compounds with Potency Against Drug-Resistant Mycobacterium Tuberculosis Journal of Medicinal Chemistry. Jun, 2016 | Pubmed ID: 27214150 DfrA ThyA Double Deletion in Para-Aminosalicylic Acid-Resistant Mycobacterium Tuberculosis Beijing Strains Antimicrobial Agents and Chemotherapy. Jun, 2016 | Pubmed ID: 27021327 Concordance of Four Commercial Enzyme Immunoassay and Three Immunoblot Formats for the Detection of Lyme Borreliosis Antibodies in Human Serum: the Two-tier Approach Remains Pathology. Apr, 2016 | Pubmed ID: 27020501 Identifying Likely Transmission Pathways Within a 10-Year Community Outbreak of Tuberculosis by High-Depth Whole Genome Sequencing PloS One. 2016 | Pubmed ID: 26938641 Genomic Dissection of Australian Bordetella Pertussis Isolates from the 2008-2012 Epidemic The Journal of Infection. Apr, 2016 | Pubmed ID: 26826518 Genotype Heterogeneity of Mycobacterium Tuberculosis Within Geospatial Hotspots Suggests Foci of Imported Infection in Sydney, Australia Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 06, 2016 | Pubmed ID: 26187743 Antibiotic Susceptibility of Diverse Mycobacterium Abscessus Complex Strains in New South Wales, Australia Pathology. Dec, 2015 | Pubmed ID: 26517625 Pertactin Negative Bordetella Pertussis Demonstrates Higher Fitness Under Vaccine Selection Pressure in a Mixed Infection Model Vaccine. Nov, 2015 | Pubmed ID: 26432908 It Is Not All About Single Nucleotide Polymorphisms: Comparison of Mobile Genetic Elements and Deletions in Listeria Monocytogenes Genomes Links Cases of Hospital-Acquired Listeriosis to the Environmental Source Journal of Clinical Microbiology. Nov, 2015 | Pubmed ID: 26311854 Genomic Variability of Serial Human Isolates of Salmonella Enterica Serovar Typhimurium Associated with Prolonged Carriage Journal of Clinical Microbiology. Nov, 2015 | Pubmed ID: 26311853 Epidemiology of Peripheral Lymph Node Tuberculosis and Genotyping of M. Tuberculosis Strains: A Case-Control Study PloS One. 2015 | Pubmed ID: 26177546 Editorial: Laboratory Preparedness for Ebolavirus Disease Pathology. Aug, 2015 | Pubmed ID: 26126052 Genomic Epidemiology of Clostridium Botulinum Isolates from Temporally Related Cases of Infant Botulism in New South Wales, Australia Journal of Clinical Microbiology. Sep, 2015 | Pubmed ID: 26109442 Defining the Core Genome of Salmonella Enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing Journal of Clinical Microbiology. Aug, 2015 | Pubmed ID: 26019201 Genome Sequencing Reveals Novel Deletions Associated with Secondary Resistance to Pyrazinamide in MDR Mycobacterium Tuberculosis The Journal of Antimicrobial Chemotherapy. Sep, 2015 | Pubmed ID: 25977398 The Role of Pathogen Genomics in Assessing Disease Transmission BMJ (Clinical Research Ed.). May, 2015 | Pubmed ID: 25964672 Intercontinental Dissemination of Azithromycin-resistant Shigellosis Through Sexual Transmission: a Cross-sectional Study The Lancet. Infectious Diseases. Aug, 2015 | Pubmed ID: 25936611 Proficiency Testing for Bacterial Whole Genome Sequencing: an End-user Survey of Current Capabilities, Requirements and Priorities BMC Infectious Diseases. Apr, 2015 | Pubmed ID: 25887164 Delineating Community Outbreaks of Salmonella Enterica Serovar Typhimurium by Use of Whole-genome Sequencing: Insights into Genomic Variability Within an Outbreak Journal of Clinical Microbiology. Apr, 2015 | Pubmed ID: 25609719 Added Value of Whole-genome Sequencing for Management of Highly Drug-resistant TB The Journal of Antimicrobial Chemotherapy. Apr, 2015 | Pubmed ID: 25492392 Investigating Genome Reduction of Bordetella Pertussis Using a Multiplex PCR-based Reverse Line Blot Assay (mPCR/RLB) BMC Research Notes. Oct, 2014 | Pubmed ID: 25319278 Clinical Microbiology Informatics Clinical Microbiology Reviews. Oct, 2014 | Pubmed ID: 25278581 Temporal Dynamics of Mycobacterium Tuberculosis Genotypes in New South Wales, Australia BMC Infectious Diseases. Aug, 2014 | Pubmed ID: 25149181 Fluoroquinolone Resistance in Non-multidrug-resistant Tuberculosis-a Surveillance Study in New South Wales, Australia, and a Review of Global Resistance Rates International Journal of Infectious Diseases : IJID : Official Publication of the International Society for Infectious Diseases. Sep, 2014 | Pubmed ID: 25086437 Use of the 5' Untranslated Region and VP1 Region to Examine the Molecular Diversity in Enterovirus B Species Journal of Medical Microbiology. Oct, 2014 | Pubmed ID: 25038138 Improved Identification of Rapidly Growing Mycobacteria by a 16S-23S Internal Transcribed Spacer Region PCR and Capillary Gel Electrophoresis PloS One. 2014 | Pubmed ID: 25013955 Pathogen Genome Bioinformatics Methods in Molecular Biology (Clifton, N.J.). 2014 | Pubmed ID: 24870136 Rapid Increase in Pertactin-deficient Bordetella Pertussis Isolates, Australia Emerging Infectious Diseases. Apr, 2014 | Pubmed ID: 24655754 Potent Antimycobacterial Activity of the Pyridoxal Isonicotinoyl Hydrazone Analog 2-pyridylcarboxaldehyde Isonicotinoyl Hydrazone: a Lipophilic Transport Vehicle for Isonicotinic Acid Hydrazide Molecular Pharmacology. Feb, 2014 | Pubmed ID: 24243647 Effectiveness of Hospital-wide Methicillin-resistant Staphylococcus Aureus (MRSA) Infection Control Policies Differs by Ward Specialty PloS One. 2013 | Pubmed ID: 24340085 The Use of Mycobacterial Interspersed Repetitive Unit Typing and Whole Genome Sequencing to Inform Tuberculosis Prevention and Control Activities New South Wales Public Health Bulletin. Jul, 2013 | Pubmed ID: 23849021 Software for Selecting the Most Informative Sets of Genomic Loci for Multi-target Microbial Typing BMC Bioinformatics. May, 2013 | Pubmed ID: 23635100 Quantitative Estimation of the Stability of Methicillin-resistant Staphylococcus Aureus Strain-typing Systems by Use of Kaplan-Meier Survival Analysis Journal of Clinical Microbiology. Jan, 2013 | Pubmed ID: 23100339 Assignment of RecA Reference Sequence Types for Enhanced Identification of the Burkholderia Cepacia Complex Pathology. Jun, 2012 | Pubmed ID: 28193343 Francisella Tularensis Subspecies Holarctica, Tasmania, Australia, 2011 Emerging Infectious Diseases. Sep, 2012 | Pubmed ID: 22931809 Prospective Genotyping of Hospital-acquired Methicillin-resistant Staphylococcus Aureus Isolates by Use of a Novel, Highly Discriminatory Binary Typing System Journal of Clinical Microbiology. Nov, 2012 | Pubmed ID: 22895043 Linear Normalised Hash Function for Clustering Gene Sequences and Identifying Reference Sequences from Multiple Sequence Alignments Microbial Informatics and Experimentation. Jan, 2012 | Pubmed ID: 22587938 Impact of a Web-based Personally Controlled Health Management System on Influenza Vaccination and Health Services Utilization Rates: a Randomized Controlled Trial Journal of the American Medical Informatics Association : JAMIA. Sep-Oct, 2012 | Pubmed ID: 22582203 Protocol for a Randomised Controlled Trial Examining the Impact of a Web-based Personally Controlled Health Management System on the Uptake of Influenza Vaccination Rates BMC Health Services Research. Apr, 2012 | Pubmed ID: 22462549 Improving Resolution of Public Health Surveillance for Human Salmonella Enterica Serovar Typhimurium Infection: 3 Years of Prospective Multiple-locus Variable-number Tandem-repeat Analysis (MLVA) BMC Infectious Diseases. Mar, 2012 | Pubmed ID: 22462487 选择与演变的百日咳百日咳毒素启动子区 PtxP3 等位基因的出现。 Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. Jan, 2012 | Pubmed ID: 22293463 噬菌体类型和单核苷酸多态性分型的鼠伤寒沙门氏菌力钩端螺旋体的遗传关系。 Journal of Clinical Microbiology. Jan, 2012 | Pubmed ID: 22205813 Translational Web Robots for Pathogen Genome Analysis Microbial Informatics and Experimentation. Oct, 2011 | Pubmed ID: 22587672 红色诺卡氏菌物种的相似性和 16S RRNA 基因序列数据的聚类分析的定义参考序列。 PloS One. 2011 | Pubmed ID: 21687706 系统发育配置文件计算细菌全基因组分析揭示了无乳链球菌潜在致病基因。 PloS One. 2011 | Pubmed ID: 21483735 改进的大头茶、 红球菌和 Tsukamurella 由 5' 端 16S RRNA 基因测序的物种的识别。 Pathology. Jan, 2011 | Pubmed ID: 21240067 编辑器的选择: 异烟肼耐药的牛型结核分枝杆菌结果用于特异性免疫治疗膀胱癌的影响。 Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America. Jan, 2011 | Pubmed ID: 21148524 深入了解百日咳从比较基因组分析的演变: 疫苗驱动选择的证据。 Molecular Biology and Evolution. Jan, 2011 | Pubmed ID: 20833694 Bug 在公告中的早餐: 生物安全和传染性疾病。 New South Wales Public Health Bulletin. May-Jun, 2010 | Pubmed ID: 21604605 SecA1 基因序列多态性物种鉴定红色诺卡氏菌菌种和菌种内遗传多样性的承认。 Journal of Clinical Microbiology. Nov, 2010 | Pubmed ID: 20810768 在株耐甲氧西林葡萄球菌金黄色葡萄球菌卡带染色体 Mec 型四意外的多样性。 Journal of Clinical Microbiology. Oct, 2010 | Pubmed ID: 20686095 耐甲氧西林葡萄球菌金黄色医院所使用的传输源性噬菌体的开放读框键入 PCR 和反向线印迹检测,从而增强的快速鉴定。 Journal of Clinical Microbiology. Aug, 2010 | Pubmed ID: 20519463 三年的发病率低人群中结核分枝杆菌基因型的纵向研究。 Pathology. Apr, 2010 | Pubmed ID: 20350221 PubMed 全联想研究传染病。 PloS One. 2010 | Pubmed ID: 20224767 波氏杆菌百日咳无性系由多位点数目可变串联重复分析确定。 Emerging Infectious Diseases. Feb, 2010 | Pubmed ID: 20113564 反向行杂交和 16S-23 型飞机 RRNA 基因间隔区区的五个新出现的红色诺卡氏菌致病性物种的 DNA 测序研究。 Journal of Medical Microbiology. May, 2010 | Pubmed ID: 20110385 通过针对 16S RRNA 和 16S-23 型飞机 RRNA 的反向线斑点杂交技术鉴定致病性红色诺卡氏菌基因间隔区。 Journal of Clinical Microbiology. Feb, 2010 | Pubmed ID: 19955277 常用的标志物无乳链球菌似乎没有预测致病的分子流行病学研究。 Pathology. 2009 | Pubmed ID: 19900108 流感爆发期间 2008 年悉尼世界青年日: 该实用程序的实验室测试和对大规模集会爆发遏制的病例定义。 PloS One. 2009 | Pubmed ID: 19727401 分配参考 5' 端 16S RDNA 序列和诺卡氏种特异性序列多态性提高了物种鉴定的菌。 The Open Microbiology Journal. 2009 | Pubmed ID: 19639036 滚圆放大和特异性 PCR 快速检测 KatG 和因哈基因突变在结核分枝杆菌。 International Journal of Medical Microbiology : IJMM. Dec, 2009 | Pubmed ID: 19604720 新多重 Pcr 反向线印迹杂交 (mPCR/RLB) 测定快速的金黄色葡萄球菌卡带染色体 Mec (SCCmec) 打字。 Journal of Medical Microbiology. Aug, 2009 | Pubmed ID: 19528184 非结核分枝杆菌感染: 与高效液相色谱法和 16S RRNA 基因测序相比基因型结核分枝杆菌 CM/AS 测定的实用程序。 Journal of Medical Microbiology. Jul, 2009 | Pubmed ID: 19502366 实验室指导检测疾病爆发: 三代的监控系统。 Archives of Pathology & Laboratory Medicine. Jun, 2009 | Pubmed ID: 19492884 快速、 准确的百日咳针对使用实时 Pcr 技术和高分辨率融化分析脱细胞疫苗抗原基因分型。 Journal of Microbiological Methods. Jun, 2009 | Pubmed ID: 19341769 在硅确定优先次序的候选基因的原核基因功能发现: 系统发育的配置文件的应用程序。 BMC Bioinformatics. 2009 | Pubmed ID: 19292914 生物信息学对协助传染病的控制。 BMC Bioinformatics. 2009 | Pubmed ID: 19208185 使用可扩展的基因型聚类新兴出现 Biosurveillance。 Journal of Biomedical Informatics. Feb, 2009 | Pubmed ID: 18723122 百日咳的抬头: 对诊断和监测的影响。 New South Wales Public Health Bulletin. Jul-Aug, 2008 | Pubmed ID: 19007547 抗生素处方的决策支持系统。 Current Opinion in Infectious Diseases. Dec, 2008 | Pubmed ID: 18988320 全基因组的单核苷酸多态性在百日咳使用比较基因组测序分析。 Research in Microbiology. Nov-Dec, 2008 | Pubmed ID: 18790049 在临床生物信息学发展决策支持系统。 Methods in Molecular Medicine. 2008 | Pubmed ID: 18453098 临床医师的信息需求和决策支持受不同型号的照顾?实验研究。 Studies in Health Technology and Informatics. 2007 | Pubmed ID: 17911845 正在对红霉素波氏杆菌百日咳敏感性改变吗?MIC 澳大利亚株 1971年-2006 年之间的趋势。 The Journal of Antimicrobial Chemotherapy. Nov, 2007 | Pubmed ID: 17827145 单和多位点序列分型与表征的耐甲氧西林金黄色葡萄球菌毒素基因的分析比较。 Journal of Clinical Microbiology. Oct, 2007 | Pubmed ID: 17715374 我们正在测量右端点吗?电脑化的决定造成的影响的变量支持对病人预后: 有系统的审查。 Medical Informatics and the Internet in Medicine. Sep, 2007 | Pubmed ID: 17701828 护理社区获得性肺炎的测试点: 我们有所有的答案吗? The Medical Journal of Australia. Jul, 2007 | Pubmed ID: 17605702 病原分析疾病管理和监督。 Nature Reviews. Microbiology. Jun, 2007 | Pubmed ID: 17487146 澳大利亚青年肺结核的爆发。 The Medical Journal of Australia. Mar, 2007 | Pubmed ID: 17391086 实用程序在接触调查中结核分枝杆菌基因分型: 决策分析。 Tuberculosis (Edinburgh, Scotland). May, 2007 | Pubmed ID: 17161653 决定复杂性影响的程度和类型的决策支持使用。 AMIA ... Annual Symposium Proceedings / AMIA Symposium. AMIA Symposium. 2006 | Pubmed ID: 17238436 在新南威尔士州的结核分枝杆菌基因分型: 从 18 个月的全州的审判结果。 New South Wales Public Health Bulletin. May-Jun, 2006 | Pubmed ID: 17036086 泌尿系结核分枝杆菌牛型亚种山羊由于案例。 Pathology. Aug, 2006 | Pubmed ID: 16916737 抗生素耐药的革兰氏阴性菌的筛选。 The Lancet Infectious Diseases. Jun, 2006 | Pubmed ID: 16728313 掌上电脑为基础的决策支持减少了逗留和抗生素处方中危重病人长度。 Journal of the American Medical Informatics Association : JAMIA. Jul-Aug, 2005 | Pubmed ID: 15802478 比较影响的指导原则、 临床数据和决策支持上订明的决定: 交互式 Web 实验模拟例。 Journal of the American Medical Informatics Association : JAMIA. Jan-Feb, 2004 | Pubmed ID: 14527970 其中临床决定从自动化中受益?任务的复杂性的方法。 International Journal of Medical Informatics. Jul, 2003 | Pubmed ID: 12909183 其中临床决定从自动化中受益?任务的复杂性的方法。 Studies in Health Technology and Informatics. 2002 | Pubmed ID: 15460772 念珠菌光滑全基因组测序检测抗真菌耐药性标志物 Chayanika Biswas*1, Sharon C-A. Chen*1,2,3, Catriona Halliday1,2, Elena Martinez1, Rebecca J. Rockett1, Qinning Wang1, Verlaine J. Timms1, Rajat Dhakal1, Rosemarie Sadsad1, Karina J. Kennedy4, Geoffrey Playford4,5, Deborah J. Marriott6, Monica A. Slavin7, Tania C. Sorrell1,3, Vitali Sintchenko1,2,3 1Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, 2Centre for Infectious Diseases and Microbiology Laboratory Services, ICPMR, 3Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, 4Department of Microbiology and Infectious Diseases, Canberra Hospital and Health Services, Australian National University Medical School, 5Infection Management Services, Australian National University Medical School, 6Department of Microbiology and Infectious Diseases, St. Vincent's Hospital, 7Department of Infectious Diseases, Peter MacCallum Cancer Centre JoVE 56714 Medicine 多重PCR和反向线杂交检测(MPCR / RLB) Matthew V. N. O'Sullivan1, Fei Zhou1, Vitali Sintchenko1, Fanrong Kong1, Gwendolyn L. Gilbert1 1Centre for Infectious Diseases and Microbiology, University of Sydney JoVE 2781 Biology
念珠菌光滑全基因组测序检测抗真菌耐药性标志物 Chayanika Biswas*1, Sharon C-A. Chen*1,2,3, Catriona Halliday1,2, Elena Martinez1, Rebecca J. Rockett1, Qinning Wang1, Verlaine J. Timms1, Rajat Dhakal1, Rosemarie Sadsad1, Karina J. Kennedy4, Geoffrey Playford4,5, Deborah J. Marriott6, Monica A. Slavin7, Tania C. Sorrell1,3, Vitali Sintchenko1,2,3 1Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, 2Centre for Infectious Diseases and Microbiology Laboratory Services, ICPMR, 3Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, 4Department of Microbiology and Infectious Diseases, Canberra Hospital and Health Services, Australian National University Medical School, 5Infection Management Services, Australian National University Medical School, 6Department of Microbiology and Infectious Diseases, St. Vincent's Hospital, 7Department of Infectious Diseases, Peter MacCallum Cancer Centre JoVE 56714 Medicine
多重PCR和反向线杂交检测(MPCR / RLB) Matthew V. N. O'Sullivan1, Fei Zhou1, Vitali Sintchenko1, Fanrong Kong1, Gwendolyn L. Gilbert1 1Centre for Infectious Diseases and Microbiology, University of Sydney JoVE 2781 Biology