Xiangyu Deng

Publications

• Quasi-metagenomics and Realtime Sequencing Aided Detection and Subtyping of from Food Samples
  Applied and Environmental Microbiology. Dec, 2017  |   Pubmed ID: 29196295
• Salmonella Survival During Thermal Dehydration of Fresh Garlic and Storage of Dehydrated Garlic Products
  International Journal of Food Microbiology. Dec, 2017  |   Pubmed ID: 29024904
• A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens
  Frontiers in Microbiology. 2017  |   Pubmed ID: 28348549
• Rapid Detection of Salmonella in Raw Chicken Breast Using Real-time PCR Combined with Immunomagnetic Separation and Whole Genome Amplification
  Food Microbiology. May, 2017  |   Pubmed ID: 27884771
• Distinct Salmonella Enteritidis Lineages Associated with Enterocolitis in High-income Settings and Invasive Disease in Low-income Settings
  Nature Genetics. 10, 2016  |   Pubmed ID: 27548315
• Genomic Epidemiology: Whole-Genome-Sequencing-Powered Surveillance and Outbreak Investigation of Foodborne Bacterial Pathogens
  Annual Review of Food Science and Technology. 2016  |   Pubmed ID: 26772415
• The Food Industry's Current and Future Role in Preventing Microbial Foodborne Illness Within the United States
  Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America. Jul, 2015  |   Pubmed ID: 25824814
• Salmonella Serotype Determination Utilizing High-throughput Genome Sequencing Data
  Journal of Clinical Microbiology. May, 2015  |   Pubmed ID: 25762776
• Comparative Analysis of Subtyping Methods Against a Whole-genome-sequencing Standard for Salmonella Enterica Serotype Enteritidis
  Journal of Clinical Microbiology. Jan, 2015  |   Pubmed ID: 25378576
• Genomic Epidemiology of Salmonella Enterica Serotype Enteritidis Based on Population Structure of Prevalent Lineages
  Emerging Infectious Diseases. Sep, 2014  |   Pubmed ID: 25147968