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Chapter 15

Studying DNA and RNA

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Overview Scientists create recombinant DNA by combining DNA from different sources—often, other species—in the laboratory. DNA cloning allows …
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DNA isolation protocols can be fast and straightforward or complex and time-consuming depending on the type and quality of DNA required for further …
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Agarose gel electrophoresis is a laboratory technique commonly used to separate DNA fragments by size. However, it can also be used to isolate and purify …
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DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize …
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Agarose gel electrophoresis is very useful in separating DNA fragments by size. Running a DNA ladder containing fragments of the known length alongside …
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Microarrays are high-throughput and relatively inexpensive assays that can be automated to analyze large quantities of data at a time. They are used in …
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Overview Only genes that are transcribed into messenger RNA (mRNA) are active, or expressed. Scientists can, therefore, extract the mRNA from cells to …
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Fluorescence in situ hybridization, or FISH, was developed in the early 1980s and has quickly become one of the most widely used techniques in …
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Overview The polymerase chain reaction, or PCR, is a widely used technique for copying segments of DNA. Due to exponential amplification, PCR can produce …
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Real-time reverse transcription-polymerase chain reaction, or Real-time RT-PCR, is an analytical tool used to determine the expression level of target …
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Rapid Amplification of cDNA Ends, or RACE, is one of the most effective methods to obtain a full-length cDNA from an mRNA sequence between a known …
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DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at …
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The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and …
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RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the …
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The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base …
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Restriction enzymes are bacterial enzymes used to cut DNA in a sequence-specific manner. To cleave DNA, they bind to specific palindromic sequences called …
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In the same year as the discovery of the Sanger sequencing method, another group of scientists, Allan Maxam and Walter Gilbert, demonstrated their …
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Fluorescent in situ hybridization (FISH) is a molecular technique which enables the detection of nucleic acids in cells. DNA FISH is often used in …
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Relative to the issues of off-target effects and the difficulty of inserting a long DNA fragment in the application of designer nucleases for genome …
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Photolithography is a powerful technique for the synthesis of DNA oligonucleotides on glass slides, as it combines the efficiency of phosphoramidite …