input = getDirectory("Choose the directory where the TIFF files are");
psf = File.openDialog("Select where the PSF file is stored");

output = input + "deconvolved_25it/";

File.makeDirectory(output) 

setBatchMode(true); 
list = getFileList(input);
for (i = 0; i < list.length; i++) 
        if (endsWith(list[i],'.tif')) 
        	decon(input, output, list[i], psf);
setBatchMode(false);

function decon(input,output,filename,pathToPsf) {
	//--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
	// WPL
	//--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
	pathToBlurredImage = input + filename;
	pathToDeblurredImage = output + filename;
	boundary = "REFLEXIVE"; //available options: REFLEXIVE, PERIODIC, ZERO
	resizing = "AUTO"; // available options: AUTO, MINIMAL, NEXT_POWER_OF_TWO
	output = "SAME_AS_SOURCE"; // available options: SAME_AS_SOURCE, BYTE, SHORT, FLOAT
	precision = "SINGLE"; //available options: SINGLE, DOUBLE
	threshold = "-1"; //if -1, then disabled
	maxIters = "25";
	nOfThreads = "8";
	showIter = "true";
	gamma = "0";
	filterXY = "1.0";
	filterZ = "1.0";
	normalize = "false";
	logMean = "false";
	antiRing = "true";
	changeThreshPercent = "0.01";
	db = "false";
	detectDivergence = "true";
	call("edu.emory.mathcs.restoretools.iterative.ParallelIterativeDeconvolution3D.deconvolveWPL", pathToBlurredImage, pathToPsf, pathToDeblurredImage, boundary, resizing, output, precision, threshold, maxIters, nOfThreads, showIter, gamma, filterXY, filterZ, normalize, logMean, antiRing, changeThreshPercent, db, detectDivergence);
}