Unraveling the Unseen Players in the Ocean - A Field Guide to Water Chemistry and Marine Microbiology
1Department of Biology, San Diego State University, 2Scripps Institution of Oceanography, University of California San Diego
Environment
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Environment
The WinCF Model - An Inexpensive and Tractable Microcosm of a Mucus Plugged Bronchiole to Study the Microbiology of Lung Infections
1Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, 2Department of Mechanical and Aerospace Engineering, University of California, San Diego
Immunology and Infection
Aseptic Laboratory Techniques: Plating Methods
1Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles
Biology
Whole Genome Sequencing of Candida glabrata for Detection of Markers of Antifungal Drug Resistance
1Centre for Infectious Diseases and Microbiology-Public Health, Westmead Hospital, 2Centre for Infectious Diseases and Microbiology Laboratory Services, ICPMR, 3Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, 4Department of Microbiology and Infectious Diseases, Canberra Hospital and Health Services, Australian National University Medical School, 5Infection Management Services, Australian National University Medical School, 6Department of Microbiology and Infectious Diseases, St. Vincent's Hospital, 7Department of Infectious Diseases, Peter MacCallum Cancer Centre
Medicine
High-Resolution Comparison of Bacterial Conjugation Frequencies
1Applied Chemistry and Biochemical Engineering Course, Department of Engineering, Graduate School of Integrated Science and Technology, Shizuoka University, 2Department of Bioscience, Graduated School of Science and Technology, Shizuoka University, 3Japan Collection of Microorganisms, RIKEN BioResource Research Center
JoVE In-Press
An Anaerobic Biosensor Assay for the Detection of Mercury and Cadmium
1Department of Biology, University of Ottawa
JoVE In-Press
Novel Diagnostics in Revision Arthroplasty: Implant Sonication and Multiplex Polymerase Chain Reaction
1Institute of Medical Microbiology, Immunology and Parasitology, University Hospital Bonn, 2Department of Orthopaedics and Trauma Surgery, University Hospital Bonn, 3Division of EU Cooperation/Microbiology, Paul-Ehrlich-Institute
Medicine
Identification of Rare Bacterial Pathogens by 16S rRNA Gene Sequencing and MALDI-TOF MS
1Institut für Medizinische Mikrobiologie und Hygiene, Medizinische Fakultät Carl Gustav Carus, TU Dresden, 2Institut für Virologie, Medizinische Fakultät Carl Gustav Carus, TU Dresden
Immunology and Infection
A Reference Broth Microdilution Method for Dalbavancin In Vitro Susceptibility Testing of Bacteria that Grow Aerobically
1Laboratory Specialists, Inc, 2Clinical Microbiology, Actavis plc
Immunology and Infection
Subtyping of Campylobacter jejuni ssp. doylei Isolates Using Mass Spectrometry-based PhyloProteomics (MSPP)
1Institut für Medizinische Mikrobiologie, Universitätsmedizin Göttingen
Genetics
Estimating Sediment Denitrification Rates Using Cores and N2O Microsensors
1Campus UAB, CREAF, 2Center for Advanced Studies of Blanes, (CEAB, CSIC), 3CSIC
JoVE In-Press
Evaluating Virulence and Pathogenesis of Aeromonas Infection in a Caenorhabditis Elegans Model
1Institute of Basic Medical Sciences, College of Medicine, National Cheng Kung University, 2Department of Internal Medicine, National Cheng Kung University Hospital, College of Medicine, National Cheng Kung University, 3Department of Biochemistry and Molecular Biology, College of Medicine, National Cheng Kung University, 4Department of Microbiology and Immunology, College of Medicine, National Cheng Kung University
JoVE In-Press
A Zebrafish Embryo Model for In Vivo Visualization and Intravital Analysis of Biomaterial-Associated Staphylococcus Aureus Infection
1Amsterdam UMC, University of Amsterdam, Department of Medical Microbiology, Amsterdam Infection and Immunity Institute, 2MIRA Institute for Biomedical Technology and Technical Medicine, Department of Biomaterials Science and Technology, University of Twente, 3Department of Biomedical Engineering, W.J. Kolff Institute, University Medical Center Groningen, University of Groningen, 4Institute of Biology, Leiden University
JoVE In-Press
Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples
1Department of Biology, San Diego State University, 2DOE Joint Genome Institute, 3Department of Molecular, Cellular and Developmental Biology, University of Colorado, 4Department of Pediatrics, School of Medicine, University of Colorado
Biology
Intracranial Subarachnoidal Route of Infection for Investigating Roles of Streptococcus suis Biofilms in Meningitis in a Mouse Infection Model
1College of Veterinary Medicine, Nanjing Agricultural University, 2Key Lab of Animal Bacteriology, Ministry of Agriculture, 3OIE Reference Lab for Swine Streptococcosis, 4School of Medicine, Tsinghua University, 5Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses
Immunology and Infection
Assaying for Inorganic Polyphosphate in Bacteria
1Department of Microbiology, University of Alabama at Birmingham, 2Division of Infectious Diseases, University of Alabama at Birmingham
JoVE In-Press
Identification of Virulence Markers of Mycobacterium abscessus for Intracellular Replication in Phagocytes
12I, UVSQ, INSERM UMR1173, Université Paris-Saclay, 2Institut Pasteur, Unité de Pathogénomique Mycobactérienne
JoVE In-Press
Phenotypic Analysis of Rodent Malaria Parasite Asexual and Sexual Blood Stages and Mosquito Stages
1Beykoz Institute of Life Sciences and Biotechnology, Bezmialem Vakif University, 2School of Public Health and Tropical Medicine, Department of Tropical Medicine, Tulane University
JoVE In-Press
Development of an Electrochemical DNA Biosensor to Detect a Foodborne Pathogen
1Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 2Laboratory of Functional Device, Institute of Advanced Technology, Universiti Putra Malaysia, 3Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, 4La Trobe Institute for Molecular Science, La Trobe University
Bioengineering
Use of a High-throughput In Vitro Microfluidic System to Develop Oral Multi-species Biofilms
1Department of Epidemiology, School of Public Health, The University of Michigan, 2Centre for Oral Health Research, School of Dental Sciences, Newcastle University
Bioengineering
Characterizing Microbiome Dynamics – Flow Cytometry Based Workflows from Pure Cultures to Natural Communities
1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research - UFZ
Environment
A Robust Pneumonia Model in Immunocompetent Rodents to Evaluate Antibacterial Efficacy against S. pneumoniae, H. influenzae, K. pneumoniae, P. aeruginosa or A. baumannii
1Antibacterial Discovery Performance Unit, GlaxoSmithKline
Immunology and Infection
Growing Magnetotactic Bacteria of the Genus Magnetospirillum: Strains MSR-1, AMB-1 and MS-1
1Department of Physics & Astronomy, McMaster University, 2School of Life Sciences, University of Nevada Las Vegas
JoVE In-Press
Deciphering and Imaging Pathogenesis and Cording of Mycobacterium abscessus in Zebrafish Embryos
1Dynamique des Interactions Membranaires Normales et Pathologiques, CNRS, UMR 535, Université Montpellier, 2Centre d'études d'agents Pathogènes et Biotechnologies pour la Santé, CNRS, FRE 3689, Université Montpellier, 3Unité de Formation et de Recherche des Sciences de la Santé, EA3647-EPIM, Université Versailles St Quentin
Immunology and Infection
Oral Biofilm Formation on Different Materials for Dental Implants
1Department of Dental Materials and Prosthodontics, School of Dentistry of Ribeirão Preto, University of São Paulo, 2Department of Restorative Dentistry, School of Dentistry of Ribeirão Preto, University of São Paulo
Medicine
A Whole Cell Bioreporter Approach to Assess Transport and Bioavailability of Organic Contaminants in Water Unsaturated Systems
1Department of Environmental Microbiology, Helmholtz Centre for Environmental Research - UFZ, 2Department of River Ecology, Helmholtz Centre for Environmental Research - UFZ
Environment
Aseptic Laboratory Techniques: Volume Transfers with Serological Pipettes and Micropipettors
1Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles
Biology
A Protein Microarray Assay for Serological Determination of Antigen-specific Antibody Responses Following Clostridium difficile Infection
1Breast Surgery Group, Division of Medical Sciences and Graduate Entry Medicine, School of Medicine, Queen's Medical Centre, University of Nottingham, 2Medical Microbiology and Immunology Department, Faculty of Medicine, Mansoura University, 3Nottingham Digestive Diseases Centre and NIHR Nottingham Digestive Diseases Biomedical Research Centre, School of Medicine, Queen's Medical Centre, University of Nottingham
Immunology and Infection
Isolation and Analysis of Microbial Communities in Soil, Rhizosphere, and Roots in Perennial Grass Experiments
1Department of Agronomy and Horticulture and Center for Plant Science Innovation, University of Nebraska-Lincoln, 2USDA-ARS, Wheat, Sorghum and Forage Research Unit, University of Nebraska-Lincoln East Campus
Environment
Detection of Foodborne Bacterial Pathogens from Individual Filth Flies
1Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration
Environment
Capture Compound Mass Spectrometry - A Powerful Tool to Identify Novel c-di-GMP Effector Proteins
1Focal Area Infection Biology, Biozentrum of the University of Basel, 2Proteomics Core Facility, Biozentrum of the University of Basel
Biology
Collection, Isolation and Enrichment of Naturally Occurring Magnetotactic Bacteria from the Environment
1School of Earth Sciences, The Ohio State University, 2School of Environment & Natural Resources, The Ohio State University, 3Institute of Geology and Geophysics, Chinese Academy of Sciences
Biology
Genetic Manipulation in Δku80 Strains for Functional Genomic Analysis of Toxoplasma gondii
1Department of Microbiology and Immunology, The Geisel School of Medicine at Dartmouth
Immunology and Infection
Measuring Dengue Virus RNA in the Culture Supernatant of Infected Cells by Real-time Quantitative Polymerase Chain Reaction
1Department of Microbiology and Infection Control, Osaka Medical College
JoVE In-Press
Multiplex PCR Assay for Typing of Staphylococcal Cassette Chromosome Mec Types I to V in Methicillin-resistant Staphylococcus aureus
1Centre for Antimicrobial Resistance, Alberta Health Services / Calgary Laboratory Services / University of Calgary, 2Department of Pathology & Laboratory Medicine, University of Calgary, 3Department of Microbiology, Immunology and Infectious Diseases, University of Calgary, 4Department of Medicine, University of Calgary, 5The Calvin, Phoebe and Joan Snyder Institute for Chronic Diseases, University of Calgary
Immunology and Infection
Tick Microbiome Characterization by Next-Generation 16S rRNA Amplicon Sequencing
1Department of Biology, San Francisco State University
Biology
Quantifying Vibrio cholerae Colonization and Diarrhea in the Adult Zebrafish Model
1Department of Microbiology, Immunology, and Biochemistry, Wayne State University School of Medicine
Immunology and Infection
Methods to Inhibit Bacterial Pyomelanin Production and Determine the Corresponding Increase in Sensitivity to Oxidative Stress
1Department of Biological Sciences, University of Wisconsin Milwaukee
Immunology and Infection
ScanLag: High-throughput Quantification of Colony Growth and Lag Time
1Racah Institute of Physics, The Hebrew University of Jerusalem
Immunology and Infection
Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
1Department of Biology, San Diego State University, 2Computational Science Research Center, San Diego State University, 3Bioinformatics and Medical Informatics Research Center, San Diego State University, 4Department of Mathematics and Statistics, San Diego State University, 5Department of Computer Science, San Diego State University, 6Mathematics and Computer Science Division, Argonne National Laboratory, 7SPARC Committee, Broad Institute
Immunology and Infection
Producing Gene Deletions in Escherichia coli by P1 Transduction with Excisable Antibiotic Resistance Cassettes
1Evolution and Genetics, Department of Biosciences, University of Oslo
Genetics
An Aquatic Microbial Metaproteomics Workflow: From Cells to Tryptic Peptides Suitable for Tandem Mass Spectrometry-based Analysis
1Department of Biology, Concordia University
Environment
Guided Protocol for Fecal Microbial Characterization by 16S rRNA-Amplicon Sequencing
1Sheba Medical Center, 2Children's Hospital of Pittsburgh of UPMC, 3Ariel University, 4Cincinnati Children's Hospital Medical Center
Biology
Generation and Multi-phenotypic High-content Screening of Coxiella burnetii Transposon Mutants
1Cell Biology of Bacterial Infections, CNRS, FRE3689, CPBS, Université Montpellier
Immunology and Infection
Discovery of New Intracellular Pathogens by Amoebal Coculture and Amoebal Enrichment Approaches
1Institute of Microbiology, University Hospital Center and University of Lausanne
Immunology and Infection
Mouse Models Of Helicobacter Infection And Gastric Pathologies
1Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, 2Infection and Immunity Program, Monash Biomedicine Discovery Institute and Department of Microbiology, Monash University
JoVE In-Press
Soil Lysimeter Excavation for Coupled Hydrological, Geochemical, and Microbiological Investigations
1Biosphere 2, University of Arizona, 2Department of Soil, Water and Environmental Science, University of Arizona, 3Department of Hydrology and Water Resources, University of Arizona
Environment
DNA Fingerprinting of Mycobacterium leprae Strains Using Variable Number Tandem Repeat (VNTR) - Fragment Length Analysis (FLA)
1Department of Microbiology, Immunology and Pathology, Colorado State University
Immunology and Infection
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