| Material | | | |
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| Microforceps | Medicon | 07.60.03 | Used for handling the FTs |
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| Disposable Scalpels - Sterile | Swann-Morton | 0513 | Used for FT dissection |
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| Culture dish, vented, 28 ml (60mm) | Greiner Bio-One | 391-3210 | Used for dissection and for testing fibrin gel formation |
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| Cell culture plates, 12-well | Greiner Bio-One | 392-0049 | Used for FT dissection and whole-mount immunofluorescence |
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| Reagent/centrifuge tube with screw cap, 15 mL | Greiner Bio-One | 391-3477 | |
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| Reagent/centrifuge tube with screw cap, 50 mL | Greiner Bio-One | 525-0384 | |
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| Millex-GV Syringe Filter Unit, 0.22 µm, PVDF | Millipore | SLGV033RS | Used to sterile-filter the fibrinogen solution |
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| Syringe, 10 mL | Braun | 4606108V | Used to sterile-filter the fibrinogen solution |
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| Polypropylene Microcentrifuge Tubes, 1.5 mL | Fisher | FB74031 | |
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| Cell-Culture Treated Multidishes, 24-well | Nunc | 142475 | Used for casting the FT/fibrin gels for native FT characterization and ex vivo culture |
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| Cell culture plates, 96-well, U-bottom | Greiner Bio-One | 392-0019 | Used for whole-mount immunofluorescence |
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| Round/Flat Spatulas, Stainless Steel | VWR | 82027-528 | Used for whole-mount immunofluorescence |
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| Coverslips 22x22mm #1 | Menzel/Fisher | 15727582 | Used for mounting |
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| Microscope slides | Fisher | Kindler K102 | Used for mounting |
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| Absorbent paper | VWR | 115-0202 | Used for mounting |
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| Name | Company | Catalog Number | Comments |
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| Reagents | | | |
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| PBS tablets | Medicago | 09-9400-100 | Used for preparing 1x PBS |
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| Fibrinogen, Plasminogen-Depleted, Human Plasma | Calbiochem | 341578 | |
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| Hanks Balanced Salt Solution | Sigma-Aldrich | H9394-500ML | Used for preparing the fibrinogen and TA solution |
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| Fetal bovine serum | Gibco | 10270106 | Used for preparing the blocking solution |
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| Human Serum | Sigma-Aldrich | H4522 | Aliquoted in -20 °C, thaw before preparing the ex vivo culture media |
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| Gentamicin Sulfate 10mg/ml | Biowest | L0011-100 | |
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| Endothelial cell media MV Kit | Promocell | C-22120 | Contains 500 ml of Endothelial Cell Growth Medium MV, 25 mL of fetal calf serum, 2 mL of endothelial cell growth supplement, 500 μL of recombinant human epidermal growth factor (10 μg/ mL) and 500 μL of hydrocortisone (1 g/ mL) |
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| Sodium azide | Sigma-Aldrich | S2002 | Used for storage of the native and ex vivo cultured FTs. TOXIC: wear protective gloves and/or clothing, and eye and/or face protection. Use in fume hood. |
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| Acetone | Sigma-Aldrich | 32201-2.5L-M | Used to prepare the post-fixation solution. HARMFUL: wear protective gloves and/or clothing. Use in fume hood. |
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| Methanol | Sigma-Aldrich | 32213 | Used to prepare the post-fixation solution. TOXIC: wear protective gloves and/or clothing. Use in fume hood. |
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| Triton X-100 (octyl phenol ethoxylate) | Sigma-Aldrich | T9284 | Used for whole-mount immunofluorescence. HARMFUL: wear protective gloves and/or clothing. |
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| Hoechst 33342, 20mM | Life Technologies | 62249 | For nuclei counterstaining. HARMFUL: wear protective gloves and/or clothing, and eye and/or face protection. |
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| VECTASHIELD Antifade Mounting Medium | Vector Laboratories | H-1000 | Wear protective gloves and/or clothing, and eye protection. Use in fume hood. |
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| VECTASHIELD Antifade Mounting Medium with DAPI | Vector Laboratories | H-1200 | Mounting medium with nuclei counterstaining. Wear protective gloves and/or clothing, and eye protection. Use in fume hood. |
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| Eukitt Quick-hardening mounting medium | Sigma-Aldrich | 03989-100ml | TOXIC: Wear protective gloves and/or clothing, and eye protection. Use in fume hood. |
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| Thrombin from bovine plasma, lyophilized powder | Sigma-Aldrich | T9549-500UN | Dissolve at 100 units/ mL, aliquote and store at -20 °C, avoid repeated freeze/ thaw |
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| Aprotinin from bovine lung, lyophilized powder | Sigma | A3428 | Dissolve at 50 mg/ mL, aliquote and store at -20 °C, avoid repeated freeze/ thaw |
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| Name | Company | Catalog Number | Comments |
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| Growth factors | | | |
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| Recombinant human VEGFA | R&D Systems | 293-VE-010 | 50 ng/ mL final concentration |
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| Recombinant human VEGFC | R&D Systems | 752-VC-025 | 200 ng/ mL final concentration |
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| Recombinant human TGFβ | Millipore | GF346 | 1 ng/ mL final concentration |
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| Recombinant human bFGF | Millipore | 01-106 | 50 ng/ mL final concentration |
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| Name | Company | Catalog Number | Comments |
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| Primary antibodies | | | |
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| CD31 (JC70A) | Dako | M0823 | Used at 1:100 dilution, Donkey anti Mouse Alexa 488 Secondary Ab |
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| CD34 (QBEND10) | Dako | M716501-2 | Used at 1:100 dilution, Donkey anti Mouse Alexa 488 Secondary Ab |
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| CD45 (2B11+PD7/26) | Dako | M070129-2 | Used at 1:100 dilution, Donkey anti Mouse Alexa 488 Secondary Ab |
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| CD68 | ImmunoWay | RLM3161 | Used at 1:100 dilution, Donkey anti Mouse Alexa 488 Secondary Ab |
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| Cleaved caspase-3 (5A1E) | Cell Signalling | 9664 | Used at 1:200 dilution, Goat anti Rabbit Alexa 594 Secondary Ab |
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| ERG (EP111) | Dako | M731429-2 | Used at 1:100 dilution, Goat anti Rabbit Alexa 594 Secondary Ab |
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| GFAP | Dako | Z0334 | Used at 1:100 dilution, Goat anti Rabbit Alexa 594 Secondary Ab |
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| Ki67 | Leica Microsystems | NCL-Ki67p | Used at 1:1500 dilution, Goat anti Rabbit Alexa 594 Secondary Ab |
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| Lyve1 | R&D Systems | AF2089 | Used at 1:100 dilution, Donkey anti Goat Alexa 568 Secondary Ab |
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| NG2 | Millipore | AB5320 | Used at 1:100 dilution, Goat anti Rabbit Alexa 594 Secondary Ab |
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| Prox1 | ReliaTech | 102-PA32 | Used at 1:200 dilution, Goat anti Rabbit Alexa 568 Secondary Ab |
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| Prox1 | R&D Systems | AF2727 | Used at 1:40 dilution, Chicken anti Goat Alexa 594 Secondary Ab |
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| VEGFR3 (9D9F9) | Millipore | MAB3757 | Used at 1:100 dilution, Donkey anti Mouse Alexa 488 Secondary Ab |
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| α-SMA (1A4) | Sigma | C6198 | Used at 1:400 dilution, Cy3 conjugated |
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| Name | Company | Catalog Number | Comments |
|---|
| Secondary antibodies | | | |
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| Alexa Fluor488 Donkey Anti-Mouse IgG | Life Technologies | A-21202 | Used at 1:500 dilution |
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| Alexa Fluor594 Goat Anti-Rabbit IgG | Invitrogen | A-11012 | Used at 1:500 dilution |
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| Alexa Fluor568 Donkey anti-Goat IgG | Thermo Scientific | A-11057 | Used at 1:500 dilution |
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| Alexa Fluor568 Goat anti-Rabbit IgG | Thermo Scientific | A-11036 | Used at 1:500 dilution |
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| Alexa Fluor594 Chicken Anti-Goat IgG | Molecular Probes | A-21468 | Used at 1:500 dilution |
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| Name | Company | Catalog Number | Comments |
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| Microscopes | | | |
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| Axiovert 200 inverted epifluorescence microscope | Zeiss | | For imaging of the fresh and fibrin-embedded FT |
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| SZX9 upright dissection stereomicroscope | Olympus | | For FT dissection |
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| LSM 780 confocal microscope | Zeiss | | For imaging of whole-mount immunostained FT |
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| AxioImager.Z1 upright epifluorescence microscope with Apotome | Zeiss | | For imaging of whole-mount immunostained FT |
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