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JoVE Journal Engineering
Analyse af multifaktorielle RNA-Seq eksperimenter med DiCoExpress
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Analyse af multifaktorielle RNA-Seq eksperimenter med DiCoExpress

Article DOI: 10.3791/62566-v • 05:22 min • July 29th, 2022
July 29th, 2022 •
1,2,3, 1,2, 4, 1,2, 1,2,5
1Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), Orsay, France, 2Université de Paris, CNRS, INRAE, Institute of Plant Sciences Paris Saclay (IPS2), Orsay, France, 3Université Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE - Le Moulon, Gif-sur-Yvette, France, 4LSTM, Univ Montpellier, INRAE, IRD, CIRAD, Institut Agro, Montpellier, France, 5Universitté Paris-Saclay, AgroParisTech, INRAE, UMR MIA-Paris, Paris, France

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DiCoExpress er et scriptbaseret værktøj implementeret i R til at udføre en RNA-Seq-analyse fra kvalitetskontrol til co-ekspression. DiCoExpress håndterer komplet og ubalanceret design op til 2 biologiske faktorer. Denne video tutorial guider brugeren gennem de forskellige funktioner i DiCoExpress.

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Ingeniørarbejde udgave 185
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