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In Silico Identification and Characterization of circRNAs During Host-Pathogen Interactions
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In Silico Identification and Characterization of circRNAs During Host-Pathogen Interactions

Article DOI: 10.3791/64565-v • 10:27 min • October 21st, 2022
October 21st, 2022 •
*1, *1, 2, 1
1Institute of Biological Sciences, Faculty of Science, Universiti Malaya, 2Centre for Research in Biotechnology for Agriculture (CEBAR), Universiti Malaya
* These authors contributed equally

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Summary
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The protocol submitted here explains the complete in silico pipeline needed to predict and functionally characterize circRNAs from RNA-sequencing transcriptome data studying host-pathogen interactions.

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In Silico Identification Characterization CircRNAs Host-Pathogen Interactions Circular RNA Analysis Tools Protocol Secure RNA Prediction Quantification Functional Enrichment Micro-RNA Interaction Prediction CCE RNA Network Constructions Clinical Samples Candidates Diagnostic Values Prognostic Values Programming Knowledge Basics Of Programming Languages Linux Terminal Bwa Index Hisat2-build Yml Configuration File Reference Files Index Files Library Type RNA Sequence Data Ciriquant Tool
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