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Find video protocols related to scientific articles indexed in Pubmed.
Three-dimensional distribution of plastic pellets in sandy beaches: shifting paradigms.
Sci Rep
PUBLISHED: 02-26-2014
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Plastic pellets are worldwide contaminants that accumulate in the ocean, especially in sandy beaches, where their historic standing-stock quantification relies on surface sediment samples. We demonstrated these particles present a three-dimensional instead of a simple along-across shore distribution, being found as deep as 2.0?m, with surface layers accounting for <10% of the total abundance in the sediment column. This gradient seemed to be more related to oceanographic rather than anthropic processes, suggesting a general pattern whose applicability to microplastics and sedimentary environments as a whole should be investigated. This poses criticism in the exactness of standing-stock records and demands urgent discussion of sampling protocols.
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Concentration and composition of polycyclic aromatic hydrocarbons (PAHs) in plastic pellets: implications for small-scale diagnostic and environmental monitoring.
Mar. Pollut. Bull.
PUBLISHED: 05-08-2013
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Plastic pellets may serve as a carrier of toxic contaminants, including polycyclic aromatic hydrocarbons (PAHs). Considering that beach morphodynamics and pellet distribution varied along the shore, and that contaminant sources may vary on different scales, it is expected that this variability is reflected in the concentration and composition of contaminants. This hypothesis was tested through a sampling of plastic pellets at 30 sites along the shore in Santos Bay (Brazil). The total PAH concentrations and the priority PAHs showed high variability, with no clear pattern. Their composition differed among the sampling sites; some of the compounds represent a potential risk to organisms. The sources of contamination, as indicated by the isomer ratios, were also variable among sites. The high small-scale spatial variability found here has implications for estimating the plastic pellet contamination on beaches, since a sample from a single site is unlikely to be representative of an entire beach.
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Polycyclic aromatic hydrocarbons (PAHs) in plastic pellets: variability in the concentration and composition at different sediment depths in a sandy beach.
Mar. Pollut. Bull.
PUBLISHED: 03-12-2013
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Plastic pellets have the ability to adsorb organic pollutants such as PAHs. This study analyzed the variability in the concentration and composition of PAHs on plastic pellets sampled up to 1m deep in the sediment of a sandy beach. The toxic potential of PAHs was analyzed, and the possible sources of contamination are discussed. The total PAHs varied, with the highest concentrations in the surface layer; the priority PAHs showed a different pattern. PAHs at greater depths did not reach toxicity levels above the PEL. The composition of PAHs differed between pellets from the shallower and from deeper sediment layers, and was suggested a mixture of sources. These results provided the first information on the depth distribution of PAHs in sandy beaches, associated with plastic pellets; and evidenced the potential environmental risk. Similarly to the abundance of pellets, the toxic potential is underestimated in surface samples.
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Global environmental changes: setting priorities for Latin American coastal habitats.
Glob Chang Biol
PUBLISHED: 02-13-2013
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As the effects of the Global Climate Changes on the costal regions of Central and South Americas advance, there is proportionally little research being made to understand such impacts. This commentary puts forward a series of propositions of strategies to improve performance of Central and South American science and policy making in order to cope with the future impacts of the Global Climate Changes in their coastal habitats.
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Seasonality, dietary overlap and the role of taxonomic resolution in the study of the diet of three congeneric fishes from a tropical bay.
PLoS ONE
PUBLISHED: 01-08-2013
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Not only seasonality but also taxonomic resolution of prey categories has been shown to affect diet studies. We analyzed the stomach contents of three sympatric species, Stellifer rastrifer, S. brasiliensis and S. stellifer, sampled monthly from August 2003 to October 2004 in Caraguatatuba Bay, southeastern Brazil. General characteristics and similarities among their diets were evaluated by considering high taxonomic ranks of all prey groups, and also the lower taxonomic ranks of the main prey groups. Dietary similarity was relatively high among species and low between seasons, and both evaluation criteria gave the equivalent results. The rare items, however, provided information about resource partition, and the species compositions of the most important groups were apparently good indicators of food availability.
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Population Dynamics and Diet of the Madamango Sea Catfish Cathorops spixii (Agassiz, 1829) (Siluriformes: Ariidae) in a Tropical Bight in Southeastern Brazil.
PLoS ONE
PUBLISHED: 01-01-2013
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The madamango sea catfish, Cathorops spixii (Siluriformes: Ariidae), is often among the most abundant fishes on the South American Atlantic coast. In the present study, conducted in shallow, non-estuarine coastal areas of Caraguatatuba Bight in southeastern Brazil, collections of this species, the most abundant member of the ichthyofauna, included primarily medium-sized individuals, indicating that the area may play a specific role in their development. Although studies of the local ichthyofauna have been much neglected, the area is economically important and its ecological significance is undervalued. This study primarily treats habitat use by C. spixii, assessing certain population parameters and the dietary composition. Monthly samples were taken from August 2003 through October 2004, with three trawls in two areas, corresponding to depths of about 1 to 4 m. The catfish showed two main peaks of abundance in the area, in April/May and July 2004. A mode around 9 cm SL persisted through time, and the entrance of younger recruits peaked from January to April. The low estimate for body-growth parameters (K?=?0.16) corroborates some K-strategist characteristics of the species. The asymptotic length was 27.3 cm SL and total mortality (Z) was 1.01 yr(-1). Cathorops spixii showed an omnivorous feeding habit, preying mainly upon polychaetes, copepods and bivalves, with considerable seasonality in its diet.
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Issues to be considered in counting burrows as a measure of atlantic ghost crab populations, an important bioindicator of sandy beaches.
PLoS ONE
PUBLISHED: 01-01-2013
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The use of indirect estimates of ghost-crab populations to assess beach disturbance has several advantages, including non-destructiveness, ease and low cost, although this strategy may add some degree of noise to estimates of population parameters. Resolution of these shortcomings may allow wider use of these populations as an indicator of differences in quality among beaches. This study analyzed to what extent the number of crab burrows may diverge from the number of animals, considering beach morphology, burrow depth and signs of occupation as contributing factors or indicators of a higher or lower occupation rate. We estimated the occupation rate of crabs in burrows on nine low-use beaches, which were previously categorized as dissipative, intermediate or reflexive. Three random 2-m-wide transects were laid perpendicular to the shoreline, where burrows were counted and excavated to search for crabs. The depth and signs of recent activity around the burrows were also recorded. The occupation rate differed on the different beaches, but morphodynamics was not identified as a grouping factor. A considerable number of burrows that lacked signs of recent activity proved to be occupied, and the proportions of these burrows also differed among beaches. Virtually all burrows less than 10 cm deep were unoccupied; the occupation rate tended to increase gradually to a burrow depth of 20-35 cm. Other methods (water, smoke, and traps) were applied to measure the effectiveness of excavating as a method for burrow counts. Traps and excavation proved to be the best methods. These observations illustrate the possible degree of unreliability of comparisons of beaches based on indirect measures. Combining burrow depth assessment with surrounding signs of occupation proved to be a useful tool to minimize biases.
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What is Visualize?

JoVE Visualize is a tool created to match the last 5 years of PubMed publications to methods in JoVE's video library.

How does it work?

We use abstracts found on PubMed and match them to JoVE videos to create a list of 10 to 30 related methods videos.

Video X seems to be unrelated to Abstract Y...

In developing our video relationships, we compare around 5 million PubMed articles to our library of over 4,500 methods videos. In some cases the language used in the PubMed abstracts makes matching that content to a JoVE video difficult. In other cases, there happens not to be any content in our video library that is relevant to the topic of a given abstract. In these cases, our algorithms are trying their best to display videos with relevant content, which can sometimes result in matched videos with only a slight relation.