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Find video protocols related to scientific articles indexed in Pubmed.
Effects of a carotid covered stent with a novel membrane design on the blood flow regime and hemodynamic parameters distribution at the carotid artery bifurcation.
Med Biol Eng Comput
PUBLISHED: 10-21-2014
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We have recently developed a novel membrane design for carotid covered stents that prevents emboli while preserving the external carotid artery (ECA) branch flow. Our earlier in vitro studies have shown that this novel design can maintain more than 83 % of the original ECA flow and has the potential to considerably reduce the chance of emboli release as compared to bare metal stents. In the present study, utilizing computational fluid dynamics simulations and fluid-structure interaction analyses, we further investigated the influence of this novel covered stent on the blood flow regime and distribution of hemodynamic parameters at the carotid artery bifurcation and within the branches. Simulation results of the effect of the covered stent on the flow division at the carotid bifurcation were comparable with the earlier experimental results and further verified that this covered stent can considerably preserve the ECA flow. The results also showed that this covered stent may affect the flow regime and the distribution of hemodynamic parameters at the opening of the ECA branch and at the apex of the divider wall. These altered local hemodynamic characteristics may promote the post-stenting patency of the ECA branch. Evaluation of shear-induced platelet activation suggested that activation of platelets due to the blood flow through this membrane is unlikely. However, some slow-flow regions near the stent membrane around the ECA opening may induce platelet aggregation and thrombus formation. This study further demonstrated the potential of this novel covered-stent design for the treatment of carotid atherosclerotic stenosis. Future in vivo investigations of the biological effects and mechanical performance of this covered-stent design (e.g., its thrombogenicity potential and biocompatibility) are warranted.
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Diapause induction and termination in the small brown planthopper, Laodelphax striatellus (Hemiptera: Delphacidae).
PLoS ONE
PUBLISHED: 09-04-2014
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The small brown planthopper, Laodelphax striatellus (Fallén) enters the photoperiodic induction of diapause as 3rd or 4th instar nymphs. The photoperiodic response curves in this planthopper showed a typical long-day response type with a critical daylength of approximately 11 h at 25 °C, 12 h at 22 and 20 °C and 12.5 h at 18 °C, and diapause induction was almost abrogated at 28 °C. The third stage was the most sensitive stage to photoperiod. The photoperiodic response curve at 20 °C showed a gradual decline in diapause incidence in ultra-long nights, and continuous darkness resulted in 100% development. The required number of days for a 50% response was distinctly different between the short- and long-night cycles, showing that the effect of one short night was equivalent to the effect of three long nights at 18 °C. The rearing day length of 12 h evoked a weaker intensity of diapause than did 10 and 11 h. The duration of diapause was significantly longer under the short daylength of 11 h than it was under the long daylength of 15 h. The optimal temperature for diapause termination was 26 and 28 °C. Chilling at 5 °C for different times did not shorten the duration of diapause but significantly lengthened it when chilling period was included. In autumn, 50% of the nymphs that hatched from late September to mid-October entered diapause in response to temperatures below 20 °C. The critical daylength in the field was between 12 h 10 min and 12 h 32 min (including twilight), which was nearly identical to the critical daylength of 12.5 h at 18 °C. In spring, overwintering nymphs began to emerge in early March-late March when the mean daily temperature rose to 10 °C or higher.
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High temperature superconducting FeSe films on SrTiO3 substrates.
Sci Rep
PUBLISHED: 08-12-2014
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Interface enhanced superconductivity at two dimensional limit has become one of most intriguing research directions in condensed matter physics. Here, we report the superconducting properties of ultra-thin FeSe films with the thickness of one unit cell (1-UC) grown on conductive and insulating SrTiO3 (STO) substrates. For the 1-UC FeSe on conductive STO substrate (Nb-STO), the magnetization versus temperature (M-T) measurement shows a drop crossover around 85 K. For the FeSe films on insulating STO substrate, systematic transport measurements were carried out and the sheet resistance of FeSe films exhibits Arrhenius TAFF behavior with a crossover from a single-vortex pinning region to a collective creep region. More intriguing, sign reversal of Hall resistance with temperature is observed, demonstrating a crossover from hole conduction to electron conduction above TC in 1-UC FeSe films.
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Identification and characterization of improved nitrogen efficiency in interspecific hybridized new-type Brassica napus.
Ann. Bot.
PUBLISHED: 07-02-2014
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Oilseed rape (Brassica napus) is an important oil crop worldwide. The aim of this study was to identify the variation in nitrogen (N) efficiency of new-type B. napus (genome A(r)A(r)C(c)C(c)) genotypes, and to characterize some critical physiological and molecular mechanisms in response to N limitation.
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Self-assembled alkanethiol monolayers on gold surfaces: resolving the complex structure at the interface by STM.
Phys Chem Chem Phys
PUBLISHED: 04-30-2014
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The surface properties of metals and metal oxides can be modified by adding a single layer of organic molecules. A most popular route for depositing such a molecular layer is via the formation of self-assembled monolayers (SAMs). The molecules that form SAMs have a functionality which binds to the surface and the adsorption is self-regulated to terminate at exactly one single molecular layer. The very first example, which has become the most widely studied system, of SAMs on metal surfaces consists of chemisorbed alkylthiolate on gold. Despite the simplicity in the preparation of alkanethiol SAMs and the seemingly straightforward structure of such SAMs, the detailed bonding between the sulfur head group and gold is still subject to debate. Experimental and theoretical effort in the last six years has led to a much improved understanding of this classical system of SAMs. In this review, we will highlight the most recent progress in the study of the interfacial structure of alkanethiol SAMs on gold. We focus on the important phenomenon of phase transition that occurs from n-propanethiol to n-butanethiol, and propose a unified structural model to explain how the (3 × 4) phase for short chain alkanethiol monolayers (methyl-, ethyl- and propylthiolate monolayers) changes into the (3 × 2?3)-rect./c(4 × 2) phase for long chain molecular monolayers.
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Design considerations and quantitative assessment for the development of percutaneous mitral valve stent.
Med Eng Phys
PUBLISHED: 03-05-2014
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Percutaneous heart valve replacement is gaining popularity, as more positive reports of satisfactory early clinical experiences are published. However this technique is mostly used for the replacement of pulmonary and aortic valves and less often for the repair and replacement of atrioventricular valves mainly due to their anatomical complexity. While the challenges posed by the complexity of the mitral annulus anatomy cannot be mitigated, it is possible to design mitral stents that could offer good anchorage and support to the valve prosthesis. This paper describes four new Nitinol based mitral valve designs with specific features intended to address migration and paravalvular leaks associated with mitral valve designs. The paper also describes maximum possible crimpability assessment of these mitral stent designs using a crimpability index formulation based on the various stent design parameters. The actual crimpability of the designs was further evaluated using finite element analysis (FEA). Furthermore, fatigue modeling and analysis was also done on these designs. One of the models was then coated with polytetrafluoroethylene (PTFE) with leaflets sutured and put to: (i) leaflet functional tests to check for proper coaptation of the leaflet and regurgitation leakages on a phantom model and (ii) anchorage test where the stented valve was deployed in an explanted pig heart. Simulations results showed that all the stents designs could be crimped to 18F without mechanical failure. Leaflet functional test results showed that the valve leaflets in the fabricated stented valve coapted properly and the regurgitation leakage being within acceptable limits. Deployment of the stented valve in the explanted heart showed that it anchors well in the mitral annulus. Based on these promising results of the one design tested, the other stent models proposed here were also considered to be promising for percutaneous replacement of mitral valves for the treatment of mitral regurgitation, by virtue of their key features as well as effective crimping. These models will be fabricated and put to all the aforementioned tests before being taken for animal trials.
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Dichotomy of the electronic structure and superconductivity between single-layer and double-layer FeSe/SrTiO3 films.
Nat Commun
PUBLISHED: 02-14-2014
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The latest discovery of possible high-temperature superconductivity in the single-layer FeSe film grown on a SrTiO3 substrate has generated much attention. Initial work found that, while the single-layer FeSe/SrTiO3 film exhibits a clear signature of superconductivity, the double-layer film shows an insulating behaviour. Such a marked layer-dependent difference is surprising and the underlying origin remains unclear. Here we report a comparative angle-resolved photoemission study between the single-layer and double-layer FeSe/SrTiO3 films annealed in vacuum. We find that, different from the single-layer FeSe/SrTiO3 film, the double-layer FeSe/SrTiO3 film is hard to get doped and remains in the semiconducting/insulating state under an extensive annealing condition. Such a behaviour originates from the much reduced doping efficiency in the bottom FeSe layer of the double-layer FeSe/SrTiO3 film from the FeSe-SrTiO3 interface. These observations provide key insights in understanding the doping mechanism and the origin of superconductivity in the FeSe/SrTiO3 films.
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A High-Density Genetic Map Identifies a Novel Major QTL for Boron Efficiency in Oilseed Rape (Brassica napus L.).
PLoS ONE
PUBLISHED: 01-01-2014
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Low boron (B) seriously limits the growth of oilseed rape (Brassica napus L.), a high B demand species that is sensitive to low B conditions. Significant genotypic variations in response to B deficiency have been observed among B. napus cultivars. To reveal the genetic basis for B efficiency in B. napus, quantitative trait loci (QTLs) for the plant growth traits, B uptake traits and the B efficiency coefficient (BEC) were analyzed using a doubled haploid (DH) population derived from a cross between a B-efficient parent, Qingyou 10, and a B-inefficient parent, Westar 10. A high-density genetic map was constructed based on single nucleotide polymorphisms (SNPs) assayed using Brassica 60 K Infinium BeadChip Array, simple sequence repeats (SSRs) and amplified fragment length polymorphisms (AFLPs). The linkage map covered a total length of 2139.5 cM, with 19 linkage groups (LGs) and an average distance of 1.6 cM between adjacent markers. Based on hydroponic evaluation of six B efficiency traits measured in three separate repeated trials, a total of 52 QTLs were identified, accounting for 6.14-46.27% of the phenotypic variation. A major QTL for BEC, qBEC-A3a, was co-located on A3 with other QTLs for plant growth and B uptake traits under low B stress. Using a subset of substitution lines, qBEC-A3a was validated and narrowed down to the interval between CNU384 and BnGMS436. The results of this study provide a novel major locus located on A3 for B efficiency in B. napus that will be suitable for fine mapping and marker-assisted selection breeding for B efficiency in B. napus.
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Diapause induction and termination in Hyphantria cunea (Drury) (Lepidoptera: Arctiinae).
PLoS ONE
PUBLISHED: 01-01-2014
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The fall webworm, Hyphantria cunea (Drury), enters facultative diapause as a pupa in response to short-day conditions during autumn. Photoperiodic response curves showed that the critical day length for diapause induction was 14 h 30 min, 14 h 25 min and 13 h 30 min at 22, 25 and 28°C, respectively. The photoperiodic responses under non-24 h light-dark cycles demonstrated that night length played an essential role in the determination of diapause. Experiments using a short day length interrupted by a 1-h light pulse exhibited two troughs of diapause inhibition and the effect of diapause inhibition was greater in the early scotophase than in the late scotophase. The diapause-inducing short day lengths of 8, 10 and 12 h evoked greater intensities of diapause than did 13 and 14 h. Diapause can be terminated without exposure to chilling, but chilling at 5°C for 90 and 120 d significantly accelerated diapause development, reduced mortality, and synchronized adult emergence. Additionally, the potential for H. cunea from the temperate region (Qingdao) to emerge and overwinter under field conditions in subtropical regions (Nanchang) of China was evaluated. Pupae that were transferred to Nanchang in early July showed a 60% survival rate and extremely dispersed pupal period (from 12 to 82 days), suggesting that some pupae may undergo summer diapause. Diapausing temperate region pupae that were moved out-of-doors in Nanchang during October showed approximately 20% overwintering survival; moreover, those pupae that overwintered successfully emerged the next spring during a period when their host plants would be available. The results indicate that this moth has the potential to expand its range into subtropical regions of China.
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Accumulated expression level of cytosolic glutamine synthetase 1 gene (OsGS1;1 or OsGS1;2) alter plant development and the carbon-nitrogen metabolic status in rice.
PLoS ONE
PUBLISHED: 01-01-2014
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Maintaining an appropriate balance of carbon to nitrogen metabolism is essential for rice growth and yield. Glutamine synthetase is a key enzyme for ammonium assimilation. In this study, we systematically analyzed the growth phenotype, carbon-nitrogen metabolic status and gene expression profiles in GS1;1-, GS1;2-overexpressing rice and wildtype plants. Our results revealed that the GS1;1-, GS1;2-overexpressing plants exhibited a poor plant growth phenotype and yield and decreased carbon/nitrogen ratio in the stem caused by the accumulation of nitrogen in the stem. In addition, the leaf SPAD value and photosynthetic parameters, soluble proteins and carbohydrates varied greatly in the GS1;1-, GS1;2-overexpressing plants. Furthermore, metabolite profile and gene expression analysis demonstrated significant changes in individual sugars, organic acids and free amino acids, and gene expression patterns in GS1;1-, GS1;2-overexpressing plants, which also indicated the distinct roles that these two GS1 genes played in rice nitrogen metabolism, particularly when sufficient nitrogen was applied in the environment. Thus, the unbalanced carbon-nitrogen metabolic status and poor ability of nitrogen transportation from stem to leaf in GS1;1-, GS1;2-overexpressing plants may explain the poor growth and yield.
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Evidence for inbreeding depression and pre-copulatory, but not post copulatory inbreeding avoidance in the cabbage beetle Colaphellus bowringi.
PLoS ONE
PUBLISHED: 01-01-2014
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Inbreeding is known to have adverse effects on fitness-related traits in a range of insect species. A series of theoretical and experimental studies have suggested that polyandrous insects could avoid the cost of inbreeding via pre-copulatory mate choice and/or post-copulatory mechanisms. We looked for evidence of pre-copulatory inbreeding avoidance using female mate preference trials, in which females were given the choice of mating with either of two males, a sibling and a non-sibling. We also tested for evidence of post-copulatory inbreeding avoidance by conducting double mating experiments, in which four sibling females were mated with two males sequentially, either two siblings, two non-siblings or a sibling and a non-sibling in either order. We identified substantial inbreeding depression: offspring of females mated to full siblings had lower hatching success, slower development time from egg to adult, lower survival of larval and pupal stages, and lower adult body mass than the offspring of females mated to non-sibling males. We also found evidence of pre-copulatory inbreeding avoidance, as females preferred to mate with non-sibling males. However, we did not find any evidence of post-copulatory inbreeding avoidance: egg hatching success of females mating to both sibling and non-sibling males were consistent with sperm being used without bias in relation to mate relatedness. Our results suggest that this cabbage beetle has evolved a pre-copulatory mechanism to avoid matings between close relative, but that polyandry is apparently not an inbreeding avoidance mechanism in C. bowringi.
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Mixed methyl- and propyl-thiolate monolayers on a Au(111) surface.
Langmuir
PUBLISHED: 08-22-2013
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Mixed methyl- and propyl-thiolate self-assembled monolayers (SAMs) are prepared on a Au(111) surface by exposing the gold substrate to methyl-propyl-disulfide vapor at room temperature. Scanning tunneling microscopy imaging of such SAMs reveals a (3 × 4) phase consisting of CH3-S-Au-S-CH3, CH3-S-Au-S-(CH2)2CH3, and CH3-(CH2)2-S-Au-S-(CH2)2CH3. Partial desorption of methyl-thiolate occurs when samples are thermally annealed to 373 K, leading to the formation of a striped phase consisting of primarily CH3-(CH2)2-S-Au-S-(CH2)2CH3.
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Inhibition of cadmium ion uptake in rice (Oryza sativa) cells by a wall-bound form of silicon.
New Phytol.
PUBLISHED: 06-30-2013
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The stresses acting on plants that are alleviated by silicon (Si) range from biotic to abiotic stresses, such as heavy metal toxicity. However, the mechanism of stress alleviation by Si at the single-cell level is poorly understood. We cultivated suspended rice (Oryza sativa) cells and protoplasts and investigated them using a combination of plant nutritional and physical techniques including inductively coupled plasma mass spectrometry (ICP-MS), the scanning ion-selective electrode technique (SIET) and X-ray photoelectron spectroscopy (XPS). We found that most Si accumulated in the cell walls in a wall-bound organosilicon compound. Total cadmium (Cd) concentrations in protoplasts from Si-accumulating (+Si) cells were significantly reduced at moderate concentrations of Cd in the culture medium compared with those from Si-limiting (-Si) cells. In situ measurement of cellular fluxes of the cadmium ion (Cd(2+) ) in suspension cells and root cells of rice exposed to Cd(2+) and/or Si treatments showed that +Si cells significantly inhibited the net Cd(2+) influx, compared with that in -Si cells. Furthermore, a net negative charge (charge density) within the +Si cell walls could be neutralized by an increase in the Cd(2+) concentration in the measuring solution. A mechanism of co-deposition of Si and Cd in the cell walls via a [Si-wall matrix]Cd co-complexation may explain the inhibition of Cd ion uptake, and may offer a plausible explanation for the in vivo detoxification of Cd in rice.
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The striped phases of ethylthiolate monolayers on the Au(111) surface: a scanning tunneling microscopy study.
J Chem Phys
PUBLISHED: 05-24-2013
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Striped phases of ethylthiolate monolayers, corresponding to surface coverage in between 0.2 ML and 0.27 ML, were studied using high-resolution scanning tunneling microscopy. Striped phases consist of rows of Au-adatom-diethythiolate (AAD) aligned along the [112] direction. In the perpendicular [110] direction, the AAD rows adjust their spacing according to the surface coverage. A (5?3 × ?3)-R30° striped phase with 0.27 ML thiolate and a (6?3 × ?3)-R30° striped phase with 0.23 ML thiolate, both with long-range order, are found. A localized (5 × ?3)-rect. phase is also found as a minority phase embedded in the 5?3 × ?3)-R30° phase. This (5 × ?3)-rect. phase can be constructed using di-Au-adatom-tri-thiolate species.
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Evidence for silicon within the cell walls of suspension-cultured rice cells.
New Phytol.
PUBLISHED: 05-15-2013
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Despite the ubiquity and beneficial role of silicon (Si) in plant biology, structural and chemical mechanisms operating at the single-cell level have not been extensively studied. To obtain insights regarding the effect of Si on individual cells, we cultivated suspended rice (Oryza sativa) cells in the absence and presence of Si and analyzed single cells using a combination of physical techniques including atomic force microscopy (AFM). Si is naturally present as a constituent of the cell walls, where it is firmly bound to the cell wall matrix rather than occurring within intra- or extracellular silica deposition, as determined by using inductively coupled plasma mass spectrometry (ICP-MS) and X-ray photoelectron spectroscopy (XPS). This species of Si, linked with the cell wall matrix, improves the structural stability of cell walls during their expansion and subsequent cell division. Maintaining cell shape is thereby enhanced, which may be crucial for the function and survival of cells. This study provides further evidence that organosilicon is present in plant cell walls, which broadens our understanding of the chemical nature of anomalous Si in plant biology.
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A novel carotid covered stent design: in vitro evaluation of performance and influence on the blood flow regime at the carotid artery bifurcation.
Ann Biomed Eng
PUBLISHED: 04-22-2013
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In the present study, a novel carotid covered stent design has been developed. Prototypes of different geometrical design parameters have been fabricated and their performance has been evaluated in vitro under physiological pulsatile flow condition, utilizing flow visualization (dye injection), and particle image velocimetry techniques. These evaluations include the assessment of emboli prevention capability, side-branch flow preservation, and influence on the branch flow pattern and velocity field. The novel covered stents demonstrated significantly higher emboli prevention capability than the corresponding bare metal stent, while preserving more than 83% of the original flow of the external carotid artery (ECA). Flow in the ECA through these covered stents was uniform without evidence of undesirable flow recirculation and reversed flow that might predispose the vessel wall to post-stenting intimal thickening and atherosclerotic plaque formation. This study demonstrated the potential of these novel covered stent designs for the treatment of carotid atherosclerotic stenosis. However, further computational and in vivo investigations of hemodynamics, biological effects, and mechanical performance of this covered stent design is warranted.
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Overexpression of phyA and appA genes improves soil organic phosphorus utilisation and seed phytase activity in Brassica napus.
PLoS ONE
PUBLISHED: 03-03-2013
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Phytate is the major storage form of organic phosphorus in soils and plant seeds, and phosphorus (P) in this form is unavailable to plants or monogastric animals. In the present study, the phytase genes phyA and appA were introduced into Brassica napus cv Westar with a signal peptide sequence and CaMV 35S promoter, respectively. Three independent transgenic lines, P3 and P11 from phyA and a18 from appA, were selected. The three transgenic lines exhibited significantly higher exuded phytase activity when compared to wild-type (WT) controls. A quartz sand culture experiment demonstrated that transgenic Brassica napus had significantly improved P uptake and plant biomass. A soil culture experiment revealed that seed yields of transgenic lines P11 and a18 increased by 20.9% and 59.9%, respectively, when compared to WT. When phytate was used as the sole P source, P accumulation in seeds increased by 20.6% and 46.9% with respect to WT in P11 and a18, respectively. The P3 line accumulated markedly more P in seeds than WT, while no significant difference was observed in seed yields when phytate was used as the sole P source. Phytase activities in transgenic canola seeds ranged from 1,138 to 1,605 U kg(-1) seeds, while no phytase activity was detected in WT seeds. Moreover, phytic acid content in P11 and a18 seeds was significantly lower than in WT. These results introduce an opportunity for improvement of soil and seed phytate-P bioavailability through genetic manipulation of oilseed rape, thereby increasing plant production and P nutrition for monogastric animals.
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Effect of temperature on the development of Laodelphax striatellus (Homoptera: Delphacidae).
J. Econ. Entomol.
PUBLISHED: 03-02-2013
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Temperature has a significant influence on the development of Laodelphax striatellus (Fallén), an important rice pest insect in east Asia. We set eight constant temperatures from 18 to 32 degrees C in 2 degrees C-increments to check the effect of temperature on the developmental rate of this insect species. The developmental durations of eggs and nymphs were observed daily. To ensure the accuracy of developmental durations, 500 initial samples were taken for the nymphal stage at each temperature. Performance-2 model was used to fit these data because this model can provide the lower and upper developmental thresholds simultaneously. The estimate of lower developmental thresholds of eggs (10.0 degrees C) was different from that of nymphs (7.5 degrees C). And the estimate of upper developmental thresholds of eggs (35.5 degrees C) was also different from that of nymphs (30.2 degrees C). However, for male and female nymphs, the difference in the lower developmental threshold is nonsignificant, and the difference in the upper developmental thresholds is very small (95% confidence interval of the difference: [0.007 degrees C, 0.043 degrees C]). The rate isomorphy hypothesis considers that the lower developmental thresholds of different stages for the same insect might be constant. However, the current study provides a counterexample of this hypothesis that the lower developmental threshold of eggs is different from that of nymphs. Thus, we demonstrate that the rate isomorphy hypothesis does not apply all insects. In addition, we used a popular nonlinear model, Lactin model, to fit the developmental rate data of our experiment. And we found that the estimates of lower and upper developmental thresholds by using Performance-2 model were very approximate to those by using Lactin model. The current study provides reliable estimates of thermal parameters for L. striatellus by using large experimental samples at different temperatures. It would be useful for exploring the relationship of climate change and the outbreak of this insect on rice.
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QTL for yield traits and their association with functional genes in response to phosphorus deficiency in Brassica napus.
PLoS ONE
PUBLISHED: 01-28-2013
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Oilseed rape (Brassica napus L.) is one of the most important oil crops. A primary limitation to the cultivation of this crop is the lack of available phosphorus (P) in soils. To elucidate the genetic control of P deficiency tolerance in Brassica napus, quantitative trait locus (QTL) for seed yield and yield related-traits in response to P deficiency were identified using a double haploid mapping population (TN DH) derived from a cross between a P-efficient cultivar, Ningyou 7 and a P-inefficient cultivar, Tapidor.
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Optimal low temperature and chilling period for both summer and winter diapause development in Pieris melete: based on a similar mechanism.
PLoS ONE
PUBLISHED: 01-09-2013
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The cabbage butterfly, Pieris melete hibernates and aestivates as a diapausing pupa. We present evidence that the optimum of low temperature and optimal chilling periods for both summer and winter diapause development are based on a similar mechanism. Summer or winter diapausing pupae were exposed to different low temperatures of 1, 5, 10 or 15°C for different chilling periods (ranging from 30 to 120 d) or chilling treatments started at different stages of diapause, and were then transferred to 20°C, LD12.5:11.5 to terminate diapause. Chilling temperature and duration had a significant effect on the development of aestivating and hibernating pupae. The durations of diapause for both aestivating and hibernating pupae were significantly shorter when they were exposed to low temperatures of 1, 5 or 10°C for 50 or 60 days, suggesting that the optimum chilling temperatures for diapause development were between 1 and 10°C and the required optimal chilling period was about 50-60 days. Eighty days of chilling was efficient for the completion of both summer and winter diapause. When chilling periods were ?90 days, the durations of summer and winter diapause were significantly lengthened; however, the adult emergence was more synchronous. The adaptive significance of a similar mechanism on summer and winter diapause development is discussed.
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Dual Michelson interferometers for distributed vibration detection.
Appl Opt
PUBLISHED: 08-12-2011
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A distributed fiber optic vibration sensor is described, in which two Michelson interferometers are used as phase detectors and two 3×3 couplers are deployed to demodulate the time-varying phase change caused by vibration. The two interferometers are separated by four wavelength division multiplexers. The position of the vibration is obtained by signal correlation, which can be used as a perimeter security sensor to locate the intruder. The experimental results with a 4012?m fiber sensor are discussed.
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Relationship between the c(4×2) and the (?3×?3)R30° phases in alkanethiol self-assembled monolayers on Au(111).
Phys Chem Chem Phys
PUBLISHED: 05-25-2011
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Transformation between the two well-known phases of alkanethiol monolayers on Au(111), c(4×2) and (?3×?3)R30°, has been studied using scanning tunneling microscopy in ultra-high vacuum. Among the many versions of the c(4×2) phases observed, one particular structure where a lateral shift of adsorbate by as much as 0.17 nm within the unit cell is found. This lateral shift along the [112[combining macron]] direction corresponds to the movement of one adsorbed unit, towards its nearest neighbour from one hollow site to another (fcc to hcp, or hcp to fcc).
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Cloning and characterization of boron transporters in Brassica napus.
Mol. Biol. Rep.
PUBLISHED: 05-24-2011
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Six full-length cDNA encoding boron transporters (BOR) were isolated from Brassica napus (AACC) by rapid amplification of cDNA ends (RACE). The phylogenic analysis revealed that the six BORs were the orthologues of AtBOR1, which formed companying with the triplication and allotetra-ploidization process of B. napus, and were divided into three groups in B. napus. Each group was comprised of two members, one of which was originated from Brassica rapa (AA) and the other from Brassica oleracea (CC). Based on the phylogenetic relationships, the six genes were named as BnBOR1;1a, BnBOR1;1c, BnBOR1;2a, BnBOR1;2c, BnBOR1;3a and BnBOR1;3c, respectively. The deduced BnBOR1 s had extensive similarity with other plant BORs, with the identity of 74-96.8% in amino acid sequence. The BnBOR1;3a and BnBOR1;3c resembled AtBOR1 in number and positions of the 11 introns, but the others only have 9 introns. After the gene duplication, there was evidence of purifying selection under a divergent selective pressure. The expression patterns of the six BnBOR1 s were detected by semi-quantitative RT-PCR. The BnBOR1;3a and BnBOR1;3c showed a ubiquitous expression in all of the investigated tissues, whereas the other four genes showed similar tissue-specific expression profile. Unlike the non-transcriptional regulation of AtBOR1, the expression of BnBOR1;1c and BnBOR1;2a were obviously induced by boron deficiency. This study suggested that the BOR1 s had undergone a divergent expression pattern in the genome of B. napus after that the B. napus diverged from Arabidopsis thaliana.
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Genotypic variation in phosphorus acquisition from sparingly soluble P sources is related to root morphology and root exudates in Brassica napus.
Sci China Life Sci
PUBLISHED: 02-08-2011
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Genotypic variations in the adaptive response to low-phosphorus (P) stress and P-uptake efficiency have been widely reported in many crops. We conducted a pot experiment to evaluate the P-acquisition ability of two rapeseed (Brassica napus) genotypes supplied with two sparingly soluble sources of P, Al-P and Fe-P. Then, the root morphology, proton concentrations, and carboxylate content were investigated in a solution experiment to examine the genotypic difference in P-acquisition efficiency. Both genotypes produced greater biomass and accumulated more P when supplied with Al-P than when supplied with Fe-P. The P-efficient genotype 102 showed a significantly greater ability to deplete sparingly soluble P from the rhizosphere soil because of its greater biomass and higher P uptake compared with those of the P-inefficient genotype 105. In the solution experiment, the P-efficient genotype under low-P conditions developed dominant root morphological traits, and it showed more intensive rhizosphere acidification because of greater H(+) efflux, higher H(+)-ATPase activity, and greater exudation of carboxylates than the P-inefficient genotype. Thus, a combination of morphological and physiological mechanisms contributed to the genotypic variation in the utilization of different sparingly soluble P sources in B. napus.
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Resolving the Au-adatom-alkanethiolate bonding site on Au(111) with domain boundary imaging using high-resolution scanning tunneling microscopy.
J. Am. Chem. Soc.
PUBLISHED: 09-01-2010
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The bonding sites for Au-adatom-octanethiolate within the (?3×?3)R30° structure on Au(111) have been investigated with high-resolution scanning tunneling microscopy (STM) imaging. By establishing the relationship between the lateral positions of adsorbates on the top layer of gold and those inside an etch pit, we are able to determine the adsorption configuration with a high degree of accuracy for the elusive (?3×?3)R30° molecular layer. The boundary between adjacent SAM domains is also imaged with molecular resolution that allows the assignment of adsorption site in each domain without ambiguity. The standard (?3×?3)R30° alkanethiol SAM on Au(111) is found to consist of domains with Au-adatom-octanethiolate occupying the fcc hollows site, alongside domains where the hcp hollow site is occupied.
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Analysis of the contribution of acid phosphatase to P efficiency in Brassica napus under low phosphorus conditions.
Sci China Life Sci
PUBLISHED: 07-03-2010
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To understand whether genotypic variation in acid phosphatase (APase) activity in rapeseed (Brassica napus L.) induced by phosphorus (P) deficiency has impact on P efficiency, soil APase activity in the rhizosphere for rapeseed P-efficient genotype 102 and P-inefficient genotype 105 was measured against organic and inorganic P sources in the pot experiment, and the activities of root-secreted APase and leaf intracellular APase were investigated in different P-starvation periods in the nutrient solution. Higher activity of root-secreted APase in B. napus was induced under low P conditions. However, P nutrition and P uptake efficiency of the plants supplied with organic P were not directly related to the activity of root-secreted APase due to several confounding factors affecting APase availability. The higher activity of leaf APase improved P remobilization in plants and played important roles in enhancing P use efficiency, shown by the significant correlation between leaf APase activity and P use efficiency in a rapeseed recombinant inbred population of 135 lines.
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Comparative proteome analysis of metabolic changes by low phosphorus stress in two Brassica napus genotypes.
Planta
PUBLISHED: 05-05-2010
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In an attempt to determine the adaptation strategy to phosphorous (Pi) deficiency in oilseed rape, comparative proteome analyses were conducted to investigate the differences of metabolic changes in two oilseed rape genotypes with different tolerance to low phosphorus (LP). Generally in either roots or leaves, there existed few low phosphorus (LP)-induced proteins shared in the two lines. The LP-tolerant genotype 102 maintained higher Pi concentrations than LP-sensitive genotype 105 when growing hydroponically under the 5-?M phosphorus condition. In 102 we observed the downregulation of the proteins related to gene transcription, protein translation, carbon metabolism, and energy transfer in leaves and roots, and the downregulation of proteins related to leaf growth and root cellular organization. But the proteins related to the formation of lateral root were upregulated, such as the auxin-responsive family proteins in roots and the sucrose-phosphate synthase-like protein in roots and leaves. On the other hand, the LP-sensitive genotype 105 maintained the low level of Pi concentrations and suffered high oxidative pressure under the LP condition, and stress-shocking proteins were pronouncedly upregulated such as the proteins for signal transduction, gene transcription, secondary metabolism, universal stress family proteins, as well as the proteins involved in lipid oxygenation and the disease resistance in both leaves and roots. Although the leaf proteins for growth in 105 were downregulated, the protein expressions in roots related to glycolysis and tricarboxylic acid (TCA) cycle were enhanced to satisfy the requirement of organic acid secretion.
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Proteomic alterations of Brassica napus root in response to boron deficiency.
Plant Mol. Biol.
PUBLISHED: 04-01-2010
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Boron (B) deficiency is a worldwide problem, and Brassica napus is one of the most sensitive crops to B deficiency. To better understand the B starvation response of Brassica napus, we conducted a comparative proteomic analysis of seedling stage Brassica napus root between B-sufficient and B-limited conditions: 45 differentially expressed proteins were successfully identified by 2-DE coupled with MALDI-TOF/TOF-MS and LTQ-ESI-MS/MS analysis. Among these proteins, 10 were down-regulated and 35 were up-regulated under B-limited condition. Combining GO and KEGG analyses with data from previous reports, proteins were categorized into several functional groups, including antioxidant and detoxification, defense-related proteins, signaling and regulation, carbohydrate and energy metabolism, amino acid and fatty acid metabolism, protein translation and degradation, cell wall structure, and transporter. The genes of selected proteins were analyzed by quantitative RT-PCR. Our results provide novel information for better understanding the physiological and biochemical responses to B deficiency in plants.
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Quantitative trait loci affecting seed mineral concentrations in Brassica napus grown with contrasting phosphorus supplies.
Ann. Bot.
PUBLISHED: 03-17-2010
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Phosphorus (P) deficiency is one of the major limitations for crop production. A significant relationship exists between plant P uptake from soils and the accumulation of P and other mineral elements in seeds. The aims of this study were to identify and characterize genetic loci (QTLs) controlling the accumulation of mineral elements in seeds of Brassica napus grown with contrasting P availabilities.
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Adsorption site determination for Au-octanethiolate on Au(111).
Langmuir
PUBLISHED: 03-12-2010
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Self-assembled monolayers (SAMs) of Au-octanethiolate on Au(111) have been studied using scanning tunneling microscopy (STM). Thermal annealing of the dense (square root(3) x square root(3))R30 degrees layer at 353 K for 1 h leads to the formation of a (5 square root(3) x square root(3))R30 degrees striped phase coexisting with the (square root(3) x square root(3))R30 degrees phase. High-resolution STM imaging shows that the unit cell of the (5 square root(3) x square root(3))R30 degrees phase consists of four adsorbed Au-thiolate species giving rise to an adsorbate coverage of 0.27 ML. The four Au-thiolate species take the standing-up orientation and occupy inequivalent adsorption sites: one on a bridge site and three on the hollow sites. By drawing connections between the (5 square root(3) x square root(3))R30 degrees and the (square root(3) x square root(3))R30 degrees phases, it is found that the adsorption site for Au-thiolate inside the (square root(3)3 x square root(3))R30 degrees phase must be either the fcc hollow or the hcp hollow site.
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Quantitative trait loci for root morphology in response to low phosphorus stress in Brassica napus.
Theor. Appl. Genet.
PUBLISHED: 02-11-2010
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Phosphorus (P) deficiency in soils is a major limiting factor for crop growth worldwide. Changes in root morphology and architecture represent as an important mechanism of adaptation of plants to low P (LP) stress. To elucidate the genetic control of tolerance to P deficiency in Brassica napus, quantitative trait loci (QTL) for root morphology in response to LP were identified in three independent paper culture experiments, and dissected through QTL meta-analysis. In total, 62 significant QTL for total root length, root surface area, root volume, total dry weight, and plant P uptake under high and low P conditions were detected in the three experiments. Forty-five of these QTL were clustered within four linkage groups and were integrated into eight unique QTL by two rounds of QTL meta-analysis. Three of the unique QTL, uq.A1, uq.C3a and uq.C3b, were specific for LP condition. uq.C3a and uq.C3b were identified specifically for root traits and P uptake under LP stress, and may contribute to the adaptability of B. napus to P deficiency. Two functional markers, BnIPS2-C3 and BnGPT1-C3, which were developed from the genes AtIPS2 and AtGPT1 in Arabidopsis, were located in the confidence intervals of uq.C3a and uq.C3b, respectively. And AtGPT1 that corresponded to the interval of uq.C3b by in silico mapping was a possible candidate gene of uq.C3b. These results confirmed the importance of root traits for the adaptability of B. napus to LP and partially revealed the genetic basis of tolerance to P deficiency. These findings should be valuable for further study of the mechanism of P efficiency and the breeding of P-efficient cultivars by marker-assisted selection.
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The complete nucleotide sequence of the mitochondrial genome of the cabbage butterfly, Artogeia melete (Lepidoptera: Pieridae).
Acta Biochim. Biophys. Sin. (Shanghai)
PUBLISHED: 06-06-2009
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The complete mitochondrial genome (mitogenome) of Artogeia melete was determined as being composed of 15,140 bp, including 13 protein-coding genes (PCGs), 2 rRNA genes, 22 tRNA genes, and one control region. The gene order of A. melete mitogenome is typical of Lepidoptera and differs from the insect ancestral type in the location of trnM. The A. melete mitogenome has a total of 119 bp of intergenic spacer sequences spread over 10 regions, ranging in sizes between 1 and 48 bp. The nucleotide composition of the A. melete mitogenome is also biased toward A 1 T nucleotides (79.77%), which is higher than that of Ochrogaster lunifer (77.84%), but lower than nine other lepidopterans sequenced. The PCGs have typical mitochondrial start codons, except for cox1, which contains the unusual CGA. The cox1, cox2, nad2, and nad5 genes of the A. melete mitogenome have incomplete stop codons (T). The A. melete A 1 T-rich region contains some conserved structures that are similar to those found in other lepidopteran mitogenomes, including a structure combining the motif ATAGA, a 19-bp poly(T) stretch, a microsatellite (AT)n element, and a 9-bp poly(A) upstream trnM. The A. melete mitogenome contains a duplicated 36-bp repeat element, which consists of a 26- bp core sequence flanked by 10-bp perfectly inverted repeats.
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Transcriptional profiling reveals adaptive responses to boron deficiency stress in Arabidopsis.
Z. Naturforsch., C, J. Biosci.
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Boron (B) is a micronutrient for vascular plants, and B deficiency has been recognized as a limiting factor for crop production in many areas worldwide. To gain a better insight into the adaptability mechanism of plant responses to B starvation, an Arabidopsis whole genome Affymetrix GeneChip was used to evaluate global gene expression alterations in response to short- and long-term B deficiency stress. A large number of B deficiency-responsive genes were identified and grouped by their functions. Genes linked to jasmonic acid (JA) showed the most prominent response under B deficiency. The transcripts for biosynthesis and regulation of JA were constantly induced during short- and long-term B deficiency stress. A set of well-known JA-dependent process and responsive genes showed the same expression profile. This suggested that JA could be a pivotal player in the integration of adaptive responses to B deficiency stress. Moreover, other functional groups of B deficiency-responsive genes (including various encoding the biosynthesis of antioxidants, the basic components of Ca2+ signalling, protein kinases, cell wall-modifying enzymes and proteins, H+-ATPase, K transporters, and a set of enzymes involved in central metabolism and cellular growth) were also observed, and their physiological roles under B deficiency stress are discussed. These results provide some information for a better understanding of plant-adaptive responses to B deficiency stress and potential strategies to improve B efficiency in crops.
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High-throughput root phenotyping screens identify genetic loci associated with root architectural traits in Brassica napus under contrasting phosphate availabilities.
Ann. Bot.
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Phosphate (Pi) de?ciency in soils is a major limiting factor for crop growth worldwide. Plant growth under low Pi conditions correlates with root architectural traits and it may therefore be possible to select these traits for crop improvement. The aim of this study was to characterize root architectural traits, and to test quantitative trait loci (QTL) associated with these traits, under low Pi (LP) and high Pi (HP) availability in Brassica napus.
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Dissecting quantitative trait loci for boron efficiency across multiple environments in Brassica napus.
PLoS ONE
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High yield is the most important goal in crop breeding, and boron (B) is an essential micronutrient for plants. However, B deficiency, leading to yield decreases, is an agricultural problem worldwide. Brassica napus is one of the most sensitive crops to B deficiency, and considerable genotypic variation exists among different cultivars in response to B deficiency. To dissect the genetic basis of tolerance to B deficiency in B. napus, we carried out QTL analysis for seed yield and yield-related traits under low and normal B conditions using the double haploid population (TNDH) by two-year and the BQDH population by three-year field trials. In total, 80 putative QTLs and 42 epistatic interactions for seed yield, plant height, branch number, pod number, seed number, seed weight and B efficiency coefficient (BEC) were identified under low and normal B conditions, singly explaining 4.15-23.16% and 0.53-14.38% of the phenotypic variation. An additive effect of putative QTLs was a more important controlling factor than the additive-additive effect of epistatic interactions. Four QTL-by-environment interactions and 7 interactions between epistatic interactions and the environment contributed to 1.27-4.95% and 1.17-3.68% of the phenotypic variation, respectively. The chromosome region on A2 of SYLB-A2 for seed yield under low B condition and BEC-A2 for BEC in the two populations was equivalent to the region of a reported major QTL, BE1. The B. napus homologous genes of Bra020592 and Bra020595 mapped to the A2 region and were speculated to be candidate genes for B efficiency. These findings reveal the complex genetic basis of B efficiency in B. napus. They provide a basis for the fine mapping and cloning of the B efficiency genes and for breeding B-efficient cultivars by marker-assisted selection (MAS).
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Adsorption and electron-induced dissociation of ethanethiol on Au(111).
Langmuir
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Dissociation of ethanethiol and the formation of Au-adatom-diethylthiolate rows on the Au(111) surface were investigated using scanning tunneling microscopy (STM) at low temperature. Ethanethiol molecules physisorb on Au(111) at 120 K by sequentially occupation of the elbow site, the fcc domain before covering the whole surface with a semiliquid layer without long-range order. Scanning the physisorbed layer with a sample bias higher than +1.2 V leads to dissociation via cleaving the H-S bond. One of the dissociation products, ethylthiolate, forms a double-row structure with the rows aligned in one of the [112(-)] directions. These double rows arise from the Au-adatom-dithiolate species: CH(3)CH(2)S-Au-SCH(2)CH(3).
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Quantitative trait loci for seed yield and yield-related traits, and their responses to reduced phosphorus supply in Brassica napus.
Ann. Bot.
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One of the key targets of breeding programmes in rapeseed (Brassica napus) is to develop high-yield varieties. However, the lack of available phosphorus (P) in soils seriously limits rapeseed production. The aim of this study was to dissect the genetic control of seed yield and yield-related traits in B. napus grown with contrasting P supplies.
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