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Observation of vortex domain structures in multiferroic hexagonal manganites RMnO3 by transmission electron microscopy.
Microscopy (Oxf)
PUBLISHED: 11-01-2014
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Multiferroic hexagonal manganite RMnO3 (R = rare-earth elements) shows improper ferroelectricity accompanied by tilting of MnO5 hexahedra as the primary order parameter. The ferroelectricity is originated from displacements of rare-earth ions along c-axis triggered by the MnO5 hexahedra tilting. Although coupling between ferroelectric and antiferromagnetic domains below the magnetic transition temperature of ?90 K has been reported from previous work[1], the relationship between the ferroelectric domains and structural domains due to the MnO5 hexahedra tilting has not been well-studied. In this talk, we will report our studies on unique patterns of ferroelectric antiphase domains with a vorticity in hexagonal RMnO3, obtained from the results of transmission electron microscopy [2].The electron diffraction patterns obtained at room temperature exhibit superlattice reflection spots due to the MnO5 hexahedra tilting and displacements of rare-earth ions along c-axis, in addition to the fundamental reflections associated with the high symmetry structure with the space group of P63/mmc. Unique antiphase/ferroelectric "cloverleaf-like" domain patterns are clearly observed in dark-field images taken using superlattice spots. The fundamental and superlattice dark-field imaging combined with high-resolution imaging clearly demonstrates that in the cloverleaf-like domain patterns the antiphase and ferroelectric domains arrange periodically with certain rotation direction. In addition, there exist two types of cloverleaf-like domain patterns with the opposite rotations next to each other in the superlattice dark-field images. These results indicate that the cloverleaf-like domain patterns can be considered as the aggregation of vortices and antivortices consisting of ferroelectric and antiphase domains.
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RNA families in Epstein-Barr virus.
RNA Biol
PUBLISHED: 01-21-2014
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Epstein-Barr virus (EBV) is a tumorigenic human ?-herpesvirus, which produces several known structured RNAs with functional importance: two are implicated in latency maintenance and tumorigenic phenotypes, EBER1 and EBER2; a viral small nucleolar RNA (v-snoRNA1) that may generate a small regulatory RNA; and an internal ribosomal entry site in the EBNA1 mRNA. A recent bioinformatics and RNA-Seq study of EBV identified two novel EBV non-coding (nc)RNAs with evolutionary conservation in lymphocryptoviruses and likely functional importance. Both RNAs are transcribed from a repetitive region of the EBV genome (the W repeats) during a highly oncogenic type of viral latency. One novel ncRNA can form a massive (586 nt) hairpin, while the other RNA is generated from a short (81 nt) intron and is found in high abundance in EBV-infected cells.
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Mammalian 5-Capped MicroRNA Precursors that Generate a Single MicroRNA.
Cell
PUBLISHED: 07-03-2013
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MicroRNAs (miRNAs) are short RNA gene regulators typically produced from primary transcripts that are cleaved by the nuclear microprocessor complex, with the resulting precursor miRNA hairpins exported by exportin 5 and processed by cytoplasmic Dicer to yield two (5p and 3p) miRNAs. Here, we document microprocessor-independent 7-methylguanosine (m(7)G)-capped pre-miRNAs, whose 5 ends coincide with transcription start sites and 3 ends are most likely generated by transcription termination. By establishing a small RNA Cap-seq method that employs the cap-binding protein eIF4E, we identified a group of murine m(7)G-capped pre-miRNAs genome wide. The m(7)G-capped pre-miRNAs are exported via the PHAX-exportin 1 pathway. After Dicer cleavage, only the 3p-miRNA is efficiently loaded onto Argonaute to form a functional microRNP. This unusual miRNA biogenesis pathway, which differs in pre-miRNA synthesis, nuclear-cytoplasmic transport, and guide strand selection, enables the development of shRNA expression constructs that produce a single 3p-siRNA.
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The H3K4 demethylase lid associates with and inhibits histone deacetylase Rpd3.
Mol. Cell. Biol.
PUBLISHED: 04-21-2009
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JmjC domain-containing proteins have been shown to possess histone demethylase activity. One of these proteins is the Drosophila histone H3 lysine 4 demethylase Little imaginal discs (Lid), which has been genetically classified as a Trithorax group protein. However, contrary to the supposed function of Lid in gene activation, the biochemical activity of this protein entails the removal of a histone mark that is correlated with active transcription. To understand the molecular mechanism behind the function of Lid, we have purified a Lid-containing protein complex from Drosophila embryo nuclear extracts. In addition to Lid, the complex contains Rpd3, CG3815/Drosophila Pf1, CG13367, and Mrg15. Rpd3 is a histone deacetylase, and along with Polycomb group proteins, which antagonize the function of Trithorax group proteins, it negatively regulates transcription. By reconstituting the Lid complex, we demonstrated that the demethylase activity of Lid is not affected by its association with other proteins. However, the deacetylase activity of Rpd3 is greatly diminished upon incorporation into the Lid complex. Thus, our finding that Lid antagonizes Rpd3 function provides an explanation for the genetic classification of Lid as a positive transcription regulator.
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AUF1/hnRNP D is a novel protein partner of the EBER1 noncoding RNA of Epstein-Barr virus.
RNA
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Epstein-Barr virus (EBV)-infected cells express two noncoding RNAs called EBV-encoded RNA (EBER) 1 and EBER2. Despite their high abundance in the nucleus (about 10(6) copies), the molecular function of these noncoding RNAs has remained elusive. Here, we report that the insertion into EBER1 of an RNA aptamer that binds the bacteriophage MS2 coat protein allows the isolation of EBER1 and associated protein partners. By combining MS2-mediated selection with stable isotope labeling of amino acids in cell culture (SILAC) and analysis by mass spectrometry, we identified AUF1 (AU-rich element binding factor 1)/hnRNP D (heterogeneous nuclear ribonucleoprotein D) as an interacting protein of EBER1. AUF1 exists as four isoforms generated by alternative splicing and is best known for its role in destabilizing mRNAs upon binding to AU-rich elements (AREs) in their 3 untranslated region (UTR). Using UV crosslinking, we demonstrate that predominantly the p40 isoform of AUF1 interacts with EBER1 in vivo. Electrophoretic mobility shift assays show that EBER1 can compete for the binding of the AUF1 p40 isoform to ARE-containing RNA. Given the high abundance of EBER1 in EBV-positive cells, EBER1 may disturb the normal homeostasis between AUF1 and ARE-containing mRNAs or compete with other AUF1-interacting targets in cells latently infected by EBV.
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Proximity-induced high-temperature superconductivity in the topological insulators Bi?Se? and Bi?Te?.
Nat Commun
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Interest in the superconducting proximity effect has been reinvigorated recently by novel optoelectronic applications as well as by the possible emergence of the elusive Majorana fermion at the interface between topological insulators and superconductors. Here we produce high-temperature superconductivity in Bi(2)Se(3) and Bi(2)Te(3) via proximity to Bi(2)Sr(2)CaCu(2)O(8+?), to access higher temperature and energy scales for this phenomenon. This was achieved by a new mechanical bonding technique that we developed, enabling the fabrication of high-quality junctions between materials, unobtainable by conventional approaches. We observe proximity-induced superconductivity in Bi(2)Se(3) and Bi(2)Te(3) persisting up to at least 80 K-a temperature an order of magnitude higher than any previous observations. Moreover, the induced superconducting gap in our devices reaches values of 10 mV, significantly enhancing the relevant energy scales. Our results open new directions for fundamental studies in condensed matter physics and enable a wide range of applications in spintronics and quantum computing.
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What is Visualize?

JoVE Visualize is a tool created to match the last 5 years of PubMed publications to methods in JoVE's video library.

How does it work?

We use abstracts found on PubMed and match them to JoVE videos to create a list of 10 to 30 related methods videos.

Video X seems to be unrelated to Abstract Y...

In developing our video relationships, we compare around 5 million PubMed articles to our library of over 4,500 methods videos. In some cases the language used in the PubMed abstracts makes matching that content to a JoVE video difficult. In other cases, there happens not to be any content in our video library that is relevant to the topic of a given abstract. In these cases, our algorithms are trying their best to display videos with relevant content, which can sometimes result in matched videos with only a slight relation.