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Find video protocols related to scientific articles indexed in Pubmed.
Phylogenomics resolves the timing and pattern of insect evolution.
Bernhard Misof, Shanlin Liu, Karen Meusemann, Ralph S Peters, Alexander Donath, Christoph Mayer, Paul B Frandsen, Jessica Ware, Tomáš Flouri, Rolf G Beutel, Oliver Niehuis, Malte Petersen, Fernando Izquierdo-Carrasco, Torsten Wappler, Jes Rust, Andre J Aberer, Ulrike Aspöck, Horst Aspöck, Daniela Bartel, Alexander Blanke, Simon Berger, Alexander Böhm, Thomas R Buckley, Brett Calcott, Junqing Chen, Frank Friedrich, Makiko Fukui, Mari Fujita, Carola Greve, Peter Grobe, Shengchang Gu, Ying Huang, Lars S Jermiin, Akito Y Kawahara, Lars Krogmann, Martin Kubiak, Robert Lanfear, Harald Letsch, Yiyuan Li, Zhenyu Li, Jiguang Li, Haorong Lu, Ryuichiro Machida, Yuta Mashimo, Pashalia Kapli, Duane D McKenna, Guanliang Meng, Yasutaka Nakagaki, José Luis Navarrete-Heredia, Michael Ott, Yanxiang Ou, Günther Pass, Lars Podsiadlowski, Hans Pohl, Björn M von Reumont, Kai Schütte, Kaoru Sekiya, Shota Shimizu, Adam Slipinski, Alexandros Stamatakis, Wenhui Song, Xu Su, Nikolaus U Szucsich, Meihua Tan, Xuemei Tan, Min Tang, Jingbo Tang, Gerald Timelthaler, Shigekazu Tomizuka, Michelle Trautwein, Xiaoli Tong, Toshiki Uchifune, Manfred G Walzl, Brian M Wiegmann, Jeanne Wilbrandt, Benjamin Wipfler, Thomas K F Wong, Qiong Wu, Gengxiong Wu, Yinlong Xie, Shenzhou Yang, Qing Yang, David K Yeates, Kazunori Yoshizawa, Qing Zhang, Rui Zhang, Wenwei Zhang, Yunhui Zhang, Jing Zhao, Chengran Zhou, Lili Zhou, Tanja Ziesmann, Shijie Zou, Yingrui Li, Xun Xu, Yong Zhang, Huanming Yang, Jian Wang, Jun Wang, Karl M Kjer, Xin Zhou.
Science
PUBLISHED: 11-06-2014
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Insects are the most speciose group of animals, but the phylogenetic relationships of many major lineages remain unresolved. We inferred the phylogeny of insects from 1478 protein-coding genes. Phylogenomic analyses of nucleotide and amino acid sequences, with site-specific nucleotide or domain-specific amino acid substitution models, produced statistically robust and congruent results resolving previously controversial phylogenetic relations hips. We dated the origin of insects to the Early Ordovician [~479 million years ago (Ma)], of insect flight to the Early Devonian (~406 Ma), of major extant lineages to the Mississippian (~345 Ma), and the major diversification of holometabolous insects to the Early Cretaceous. Our phylogenomic study provides a comprehensive reliable scaffold for future comparative analyses of evolutionary innovations among insects.
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The genus Labiobaetis (Ephemeroptera: Baetidae) in China, with description of a new species.
Zootaxa
PUBLISHED: 06-13-2014
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Five species of the genus Labiobaetis (Baetidae) are recognized from China based on mature nymphs, including a new species, Labiobaetis ancoralis n. sp. and a new combination, Labiobaetis mustus (Kang & Yang) n. comb. The new species differs from L. multus (Müller-Liebenau) and L. pulchellus (Müller-Liebenau & Hubbard) by the spatulate submarginal setae on labrum and the apical segment of maxillary palpus with a pronounced excavation near apex. Imago stage of L. mustus (Kang & Yang) n. comb. is described for the first time based on male and female imagoes reared from nymphs, which can be distinguished from other known imagoes of Labiobaetis by the color pattern of abdominal terga and hind wing having a tiny vestigial costal process. All Oriental species previously transferred to Pseudocloeon are reassigned to Labiobaetis in the present paper. An identification key is provided to the known mature nymphs of Oriental Labiobaetis species.
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The effect of latitudinal gradient on the species diversity of Chinese litter-dwelling thrips.
Zookeys
PUBLISHED: 01-01-2014
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To understand the global distribution patterns of litter-dwelling thrips, a total 150 leaf litter samples were collected from 6 natural reserves located in three climatic regions, temperate, subtropical and tropical. The results showed the relative abundance of Thysanoptera was over 3.0% in 4 natural reserves from subtropical and tropical zone, and reached 5.9% in one tropical reserve, only less than Acarina and Collembola. In contrast it was only 0.3% in the warm temperate natural reserves, and no thrips were collected in a mid temperate reserve. The order on the average species numbers per plot of litter thrips was tropic > subtropics > temperate (n=25, p<0.05). Mean density of litter thrips per plots in the tropics and subtropics was significantly higher than that in the temperate region (n=25, p<0.05), but the average density was not significantly different between tropical and subtropical zones (n=25, p>0.05). The diversity of litter thrips in the tropics and subtropics was much higher than that in the temperate area based on comparsions of Shannon-Wiener diversity index (H'), Pielou eveness index (J), and Simpson dominance index (D). All of these results indicated that litter-dwelling thrips lived mainly in tropical and subtropical regions; meanwhile, species number and relative abundance increased with decreasing latitude.
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Species diversity, seasonal dynamics, and vertical distribution of litter-dwelling thrips in an urban forest remnant of South China.
J. Insect Sci.
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Litter-dwelling thrips are an important component of soil macroinvertebrates in tropical and subtropical regions. However, little is known about assemblage composition, seasonal abundance and vertical distribution of litter-dwelling thrips. A survey of forest litter-dwelling thrips and other soil macroinvertebrates was conducted in an urban forest remnant at Guangzhou, China during 2004-2005 and 2008-2009. A total of 835 Tullgren samples were collected during the study. Thysanoptera constituted 6.5% of total litter-dwelling macroinvertebrate individuals extracted, representing three families, 19 genera, and 25 species. Psalidothrips ascitus Ananthakrishnan (Thysanoptera: Phlaeothripidae) and Hyidiothrips guangdongensis Wang, Tong and Zhang represented 78.5% of all individuals of litter-dwelling thrips during the survey. Numbers of species and density of leaf-litter thrips fluctuated between different months. Density of litter thrips increased from March until October, reaching a maximum of 41.1 individuals/m2 followed by a decrease. In January and February only a few larval thrips were present. Species diversity gradually increased from July (four species) to December (10 species), and then declined rapidly. The vertical distribution showed that the leaf-litter thrips species richness and abundance decreased significantly with soil depth; they were found only in the litter layer and upper soil layer (0-5 cm in depth) and were entirely absent in deeper soil layers. The results suggest that litter-dwelling thrips are a common group of litter invertebrates with high species diversity in subtropical regions. These urban forest remnants should be given special consideration in forest conservation planning, because of their significance as refugia for the litter invertebrate assemblages, especially for leaf-litter thrips.
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What is Visualize?

JoVE Visualize is a tool created to match the last 5 years of PubMed publications to methods in JoVE's video library.

How does it work?

We use abstracts found on PubMed and match them to JoVE videos to create a list of 10 to 30 related methods videos.

Video X seems to be unrelated to Abstract Y...

In developing our video relationships, we compare around 5 million PubMed articles to our library of over 4,500 methods videos. In some cases the language used in the PubMed abstracts makes matching that content to a JoVE video difficult. In other cases, there happens not to be any content in our video library that is relevant to the topic of a given abstract. In these cases, our algorithms are trying their best to display videos with relevant content, which can sometimes result in matched videos with only a slight relation.