Jean-Baptiste Cazier Centre for Computational Biology University of Birmingham Biography Publications Institution JoVE Articles Jean-Baptiste Cazier has not added a biography. If you are Jean-Baptiste Cazier and would like to personalize this page please email our Author Liaison for assistance. Publications TKTL1 Knockdown Impairs Hypoxia-Induced Glucose-6-phosphate Dehydrogenase and Glyceraldehyde-3-phosphate Dehydrogenase Overexpression International Journal of Molecular Sciences. Mar, 2022 | Pubmed ID: 35408935 Mortality Among Adults With Cancer Undergoing Chemotherapy or Immunotherapy and Infected With COVID-19 JAMA Network Open. 02, 2022 | Pubmed ID: 35188551 Recurrence of Papillary Thyroid Cancer: A Systematic Appraisal of Risk Factors The Journal of Clinical Endocrinology and Metabolism. Apr, 2022 | Pubmed ID: 34791326 Key Findings from the UKCCMP Cohort of 877 Patients with Haematological Malignancy and COVID-19: Disease Control As an Important Factor Relative to Recent Chemotherapy or Anti-CD20 Therapy British Journal of Haematology. 02, 2022 | Pubmed ID: 34761389 COVID-19 in Children with Haematological Malignancies Archives of Disease in Childhood. 02, 2022 | Pubmed ID: 34301621 Targeting Asparagine and Serine Metabolism in Germinal Centre-Derived B Cells Non-Hodgkin Lymphomas (B-NHL) Cells. 09, 2021 | Pubmed ID: 34685569 Transposable Element Sequence Fragments Incorporated into Coding and Noncoding Transcripts Modulate the Transcriptome of Human Pluripotent Stem Cells Nucleic Acids Research. 09, 2021 | Pubmed ID: 34390351 Identification of Maternal Continuous Glucose Monitoring Metrics Related to Newborn Birth Weight in Pregnant Women with Gestational Diabetes Endocrine. 11, 2021 | Pubmed ID: 34125410 Role of DNA Repair Variants and Diagnostic Radiology Exams in Differentiated Thyroid Cancer Risk: A Pooled Analysis of Two Case-Control Studies Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association for Cancer Research, Cosponsored by the American Society of Preventive Oncology. 06, 2021 | Pubmed ID: 33827984 Severity of COVID-19 in Children with Cancer: Report from the United Kingdom Paediatric Coronavirus Cancer Monitoring Project British Journal of Cancer. 02, 2021 | Pubmed ID: 33299130 Health Disparities Research is Enabled by Data Diversity but Requires Much Tighter Integration of Collaborative Efforts Journal of Global Health. Dec, 2020 | Pubmed ID: 33214885 COVID-19 Prevalence and Mortality in Patients with Cancer and the Effect of Primary Tumour Subtype and Patient Demographics: a Prospective Cohort Study The Lancet. Oncology. 10, 2020 | Pubmed ID: 32853557 Gene-environment Interaction with Smoking for Increased Non-muscle-invasive Bladder Cancer Tumor Size Translational Andrology and Urology. Jun, 2020 | Pubmed ID: 32676417 The Genetic Population Structure of Robinson Crusoe Island, Chile Frontiers in Genetics. 2020 | Pubmed ID: 32676101 COVID-19 Mortality in Patients with Cancer on Chemotherapy or Other Anticancer Treatments: a Prospective Cohort Study Lancet (London, England). 06, 2020 | Pubmed ID: 32473682 Integrative Analysis of Spontaneous CLL Regression Highlights Genetic and Microenvironmental Interdependency in CLL Blood. 02, 2020 | Pubmed ID: 31794600 Systematic Review: Genetic Associations for Prognostic Factors of Urinary Bladder Cancer Biomarkers in Cancer. 2019 | Pubmed ID: 31908559 External Replication of Urinary Bladder Cancer Prognostic Polymorphisms in the UK Biobank Frontiers in Oncology. 2019 | Pubmed ID: 31681611 Genetic Susceptibility to Radiation-related Differentiated Thyroid Cancers: a Systematic Review of Literature Endocrine-related Cancer. 10, 2019 | Pubmed ID: 31476737 Genome-wide Association Study for Tumour Stage, Grade, Size, and Age at Diagnosis of Non-muscle-invasive Bladder Cancer European Urology Oncology. 07, 2019 | Pubmed ID: 31277774 Conserved Properties of Genetic Architecture of Renal and Fat Transcriptomes in Rat Models of Insulin Resistance Disease Models & Mechanisms. 07, 2019 | Pubmed ID: 31213483 Development and Validation of a Combined Hypoxia and Immune Prognostic Classifier for Head and Neck Cancer Clinical Cancer Research : an Official Journal of the American Association for Cancer Research. 09, 2019 | Pubmed ID: 31182433 Robust Hematopoietic Specification Requires the Ubiquitous Sp1 and Sp3 Transcription Factors Epigenetics & Chromatin. 06, 2019 | Pubmed ID: 31164147 Candidate Gene Variant Effects on Language Disorders in Robinson Crusoe Island Annals of Human Biology. Mar, 2019 | Pubmed ID: 31132892 Systems Genetics of Hepatic Metabolome Reveals Octopamine As a Target for Non-Alcoholic Fatty Liver Disease Treatment Scientific Reports. 03, 2019 | Pubmed ID: 30842494 Association Between Loss of Y Chromosome and Poor Prognosis in Male Head and Neck Squamous Cell Carcinoma Head & Neck. 04, 2019 | Pubmed ID: 30582241 Novel Putative Drugs and Key Initiating Genes for Neurodegenerative Disease Determined Using Network-based Genetic Integrative Analysis Journal of Cellular Biochemistry. 04, 2019 | Pubmed ID: 30302804 Harnessing Genomics to Improve Outcomes for Women with Cancer in India: Key Priorities for Research The Lancet. Oncology. 02, 2018 | Pubmed ID: 29413464 Molecular Genetics of the Transcription Factor GLIS3 Identifies Its Dual Function in Beta Cells and Neurons Genomics. 03, 2018 | Pubmed ID: 28911974 Topological Analysis of Metabolic Networks Integrating Co-segregating Transcriptomes and Metabolomes in Type 2 Diabetic Rat Congenic Series Genome Medicine. 09, 2016 | Pubmed ID: 27716393 Transcriptome Profiling in Rat Inbred Strains and Experimental Cross Reveals Discrepant Genetic Architecture of Genome-Wide Gene Expression G3 (Bethesda, Md.). Nov, 2016 | Pubmed ID: 27646706 Premalignant SOX2 Overexpression in the Fallopian Tubes of Ovarian Cancer Patients: Discovery and Validation Studies EBioMedicine. Aug, 2016 | Pubmed ID: 27492892 Differential Clonal Evolution in Oesophageal Cancers in Response to Neo-adjuvant Chemotherapy Nature Communications. Apr, 2016 | Pubmed ID: 27045317 Application of Whole Genome and RNA Sequencing to Investigate the Genomic Landscape of Common Variable Immunodeficiency Disorders Clinical Immunology (Orlando, Fla.). Oct, 2015 | Pubmed ID: 26122175 MQTL.NMR: an Integrated Suite for Genetic Mapping of Quantitative Variations of (1)H NMR-based Metabolic Profiles Analytical Chemistry. Apr, 2015 | Pubmed ID: 25803548 Exome Sequencing in an Admixed Isolated Population Indicates NFXL1 Variants Confer a Risk for Specific Language Impairment PLoS Genetics. Mar, 2015 | Pubmed ID: 25781923 Meta-analysis of Three Genome-wide Association Studies Identifies Susceptibility Loci for Colorectal Cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33 Nature Genetics. Nov, 2010 | Pubmed ID: 20972440 Sample Preparation to Bioinformatics Analysis of DNA Methylation: Association Strategy for Obesity and Related Trait Studies Natália Yumi Noronha*1, Guilherme da Silva Rodrigues*1, Marcela Augusta de Souza Pinhel1, Jean-Baptiste Cazier2,3, Lígia Moriguchi Watanabe1, Albert Nobre Menezes4, Carlos Roberto Bueno5, Carolina Ferreira Nicoletti1, Bruno Affonso Parenti de Oliveira1, Isabelle Mello Schineider6, Isabella Harumi Yonehara Noma7, Igor Caetano Dias Alcarás8, Fernando Barbosa9, Carla Barbosa Nonino6 1Department of Internal Medicine, Ribeirão Preto Medical School, University of São Paulo, 2Centre for Computational Biology, University of Birmingham, 3Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, 4Cancer Genetics and Evolution Laboratory, Cancer Research UK, Institute of Genetics & Molecular Medicine, The University of Edinburgh, 5Ribeirão Preto School of Physical Education and Sport, University of São Paulo, 6Health Sciences Department, Ribeirao Preto Medical School, University of Sao Paulo, 7Faculty of Pharmaceutical Sciences, University of São Paulo, 8Department of Genetics, Ribeirão Preto Medical School, University of São Paulo, 9Department of Clinical, Bromatological and Toxicological Analysis, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of São Paulo JoVE 62598 Genetics
Sample Preparation to Bioinformatics Analysis of DNA Methylation: Association Strategy for Obesity and Related Trait Studies Natália Yumi Noronha*1, Guilherme da Silva Rodrigues*1, Marcela Augusta de Souza Pinhel1, Jean-Baptiste Cazier2,3, Lígia Moriguchi Watanabe1, Albert Nobre Menezes4, Carlos Roberto Bueno5, Carolina Ferreira Nicoletti1, Bruno Affonso Parenti de Oliveira1, Isabelle Mello Schineider6, Isabella Harumi Yonehara Noma7, Igor Caetano Dias Alcarás8, Fernando Barbosa9, Carla Barbosa Nonino6 1Department of Internal Medicine, Ribeirão Preto Medical School, University of São Paulo, 2Centre for Computational Biology, University of Birmingham, 3Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, 4Cancer Genetics and Evolution Laboratory, Cancer Research UK, Institute of Genetics & Molecular Medicine, The University of Edinburgh, 5Ribeirão Preto School of Physical Education and Sport, University of São Paulo, 6Health Sciences Department, Ribeirao Preto Medical School, University of Sao Paulo, 7Faculty of Pharmaceutical Sciences, University of São Paulo, 8Department of Genetics, Ribeirão Preto Medical School, University of São Paulo, 9Department of Clinical, Bromatological and Toxicological Analysis, Faculty of Pharmaceutical Sciences of Ribeirao Preto, University of São Paulo JoVE 62598 Genetics