Dmitry M. Kolpashchikov University of Central Florida Biography Publications Institution JoVE Articles Dmitry M. Kolpashchikov has not added a biography. If you are Dmitry M. Kolpashchikov and would like to personalize this page please email our Author Liaison for assistance. Publications DNA Nanostructures As Catalysts: Double Crossover Tile-Assisted 5' to 5' and 3' to 3' Chemical Ligation of Oligonucleotides Bioconjugate Chemistry. Jan, 2024 | Pubmed ID: 38135674 Cleaving Folded RNA with DNAzyme Agents Chembiochem : a European Journal of Chemical Biology. Jan, 2024 | Pubmed ID: 37870555 DNAzyme Nanomachine with Fluorogenic Substrate Delivery Function: Advancing Sensitivity in Nucleic Acid Detection Analytical Chemistry. Dec, 2023 | Pubmed ID: 38079240 Detection of Multiplex NASBA RNA Products Using Colorimetric Split G Quadruplex Probes Methods in Molecular Biology (Clifton, N.J.). 2023 | Pubmed ID: 37572289 Visual Detection of Stem-Loop Primer Amplification (SPA) Products Without Denaturation Using Peroxidase-like DNA Machines (PxDM) International Journal of Molecular Sciences. Apr, 2023 | Pubmed ID: 37175522 DNA Nanomachine (DNM) Biplex Assay for Differentiating Species International Journal of Molecular Sciences. Feb, 2023 | Pubmed ID: 36901903 OWL2: a Molecular Beacon-based Nanostructure for Highly Selective Detection of Single-nucleotide Variations in Folded Nucleic Acids Nanoscale. Mar, 2023 | Pubmed ID: 36880268 A Self-assembling Split Aptamer Multiplex Assay for SARS-COVID19 and Miniaturization of a Malachite Green DNA-based Aptamer Sensors and Actuators Reports. Nov, 2022 | Pubmed ID: 36373144 Specificity of Oligonucleotide Gene Therapy (OGT) Agents Theranostics. 2022 | Pubmed ID: 36276652 Toward a Home Test for COVID-19 Diagnosis: DNA Machine for Amplification-Free SARS-CoV-2 Detection in Clinical Samples ChemMedChem. Oct, 2022 | Pubmed ID: 36031581 Binary Antisense Oligonucleotide Agent for Cancer Marker-Dependent Degradation of Targeted RNA Nucleic Acid Therapeutics. Oct, 2022 | Pubmed ID: 35852843 DNA Nanomachine for Visual Detection of Structured RNA and Double Stranded DNA Chemical Communications (Cambridge, England). Apr, 2022 | Pubmed ID: 35415727 Split Light Up Aptamers As a Probing Tool for Nucleic Acids Methods (San Diego, Calif.). Jan, 2022 | Pubmed ID: 33992774 RNA-Cleaving DNA Thresholder Controlled by Concentrations of MiRNA Cancer Marker Chembiochem : a European Journal of Chemical Biology. May, 2021 | Pubmed ID: 33433948 Manufacturing Reusable NAND Logic Gates and Their Initial Circuits for DNA Nanoprocessors Chemistry (Weinheim an Der Bergstrasse, Germany). Feb, 2021 | Pubmed ID: 33002244 Binary (Split) Light-up Aptameric Sensors Angewandte Chemie (International Ed. in English). Mar, 2021 | Pubmed ID: 32208549 Cut and Paste for Cancer Treatment: A DNA Nanodevice That Cuts Out an RNA Marker Sequence to Activate a Therapeutic Function Angewandte Chemie (International Ed. in English). Nov, 2020 | Pubmed ID: 32687686 Click Chemistry-Based Two-Component System for Efficient Inhibition of Human Immunodeficiency Virus (HIV) Reverse Transcriptase (RT) ACS Omega. Mar, 2020 | Pubmed ID: 32149246 Bifunctional RNA-Targeting Deoxyribozyme Nanodevice As a Potential Theranostic Agent Chemistry (Weinheim an Der Bergstrasse, Germany). Mar, 2020 | Pubmed ID: 31943434 Deoxyribozyme-Based DNA Machines for Cancer Therapy Chembiochem : a European Journal of Chemical Biology. Mar, 2020 | Pubmed ID: 31553102 Evolution of Hybridization Probes to DNA Machines and Robots Accounts of Chemical Research. Jul, 2019 | Pubmed ID: 31243970 Towards DNA Nanomachines for Cancer Treatment: Achieving Selective and Efficient Cleavage of Folded RNA Angewandte Chemie (International Ed. in English). Mar, 2019 | Pubmed ID: 30693619 Split Dapoxyl Aptamer for Sequence-Selective Analysis of Nucleic Acid Sequence Based Amplification Amplicons Analytical Chemistry. Feb, 2019 | Pubmed ID: 30680988 A DNA Minimachine for Selective and Sensitive Detection of DNA The Analyst. Jan, 2019 | Pubmed ID: 30600819 Towards Sustainable Diagnostics: Replacing Unstable HO by Photoactive TiO in Testing Systems for Visible and Tangible Diagnostics for Use by Blind People RSC Advances. Nov, 2018 | Pubmed ID: 35558580 The Owl Sensor: a 'fragile' DNA Nanostructure for the Analysis of Single Nucleotide Variations Nanoscale. May, 2018 | Pubmed ID: 29781024 FaptaSyme: A Strategy for Converting a Monomer/Oligomer-Nonselective Aptameric Sensor into an Oligomer-Selective One Chembiochem : a European Journal of Chemical Biology. Apr, 2018 | Pubmed ID: 29700982 A Universal and Label-free Impedimetric Biosensing Platform for Discrimination of Single Nucleotide Substitutions in Long Nucleic Acid Strands Biosensors & Bioelectronics. Jun, 2018 | Pubmed ID: 29524915 Nanoreactors Based on DNAzyme-functionalized Magnetic Nanoparticles Activated by Magnetic Field Nanoscale. Jan, 2018 | Pubmed ID: 29297526 DNA Computing Systems Activated by Electrochemically-triggered DNA Release from a Polymer-brush-modified Electrode Array Electroanalysis. Feb, 2017 | Pubmed ID: 29379265 Divide and Control: Comparison of Split and Switch Hybridization Sensors ChemistrySelect. Jul, 2017 | Pubmed ID: 29372178 A Single Electrochemical Probe Used for Analysis of Multiple Nucleic Acid Sequences Electroanalysis. Mar, 2017 | Pubmed ID: 29371782 Liquid-to-gel Transition for Visual and Tactile Detection of Biological Analytes Chemical Communications (Cambridge, England). Nov, 2017 | Pubmed ID: 29082399 A Mutation-resistant Deoxyribozyme OR Gate for Highly Selective Detection of Viral Nucleic Acids Chemical Communications (Cambridge, England). Sep, 2017 | Pubmed ID: 28900642 Magnetic Field-Activated Sensing of MRNA in Living Cells Journal of the American Chemical Society. Sep, 2017 | Pubmed ID: 28817270 A Universal Split Spinach Aptamer (USSA) for Nucleic Acid Analysis and DNA Computation Chemical Communications (Cambridge, England). May, 2017 | Pubmed ID: 28425510 Multiplex Detection of Extensively Drug Resistant Tuberculosis Using Binary Deoxyribozyme Sensors Biosensors & Bioelectronics. Aug, 2017 | Pubmed ID: 28284077 Self-Assembling Molecular Logic Gates Based on DNA Crossover Tiles Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. Jul, 2017 | Pubmed ID: 28234410 DNA Nanotechnology for Nucleic Acid Analysis: Multifunctional Molecular DNA Machine for RNA Detection Chemical Communications (Cambridge, England). Dec, 2016 | Pubmed ID: 27886299 Nonequilibrium Hybridization Enables Discrimination of a Point Mutation Within 5-40 °C Journal of the American Chemical Society. Oct, 2016 | Pubmed ID: 27681667 DNA Antenna Tile-Associated Deoxyribozyme Sensor with Improved Sensitivity Chembiochem : a European Journal of Chemical Biology. Nov, 2016 | Pubmed ID: 27620365 Towards a DNA Nanoprocessor: Reusable Tile-Integrated DNA Circuits Angewandte Chemie (International Ed. in English). Aug, 2016 | Pubmed ID: 27430161 Split Spinach Aptamer for Highly Selective Recognition of DNA and RNA at Ambient Temperatures Chembiochem : a European Journal of Chemical Biology. Sep, 2016 | Pubmed ID: 27305425 Bioelectronic Interface Connecting Reversible Logic Gates Based on Enzyme and DNA Reactions Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. Jul, 2016 | Pubmed ID: 27145731 Expedited Quantification of Mutant Ribosomal RNA by Binary Deoxyribozyme (BiDz) Sensors RNA (New York, N.Y.). Oct, 2015 | Pubmed ID: 26289345 Bridging the Two Worlds: A Universal Interface Between Enzymatic and DNA Computing Systems Angewandte Chemie (International Ed. in English). May, 2015 | Pubmed ID: 25864379 Divide and Control: Split Design of Multi-input DNA Logic Gates Chemical Communications (Cambridge, England). Jan, 2015 | Pubmed ID: 25513764 Nuclease-containing Media for Resettable Operation of DNA Logic Gates Chemical Communications (Cambridge, England). Jan, 2015 | Pubmed ID: 25493931 Enzyme-assisted Target Recycling (EATR) for Nucleic Acid Detection Chemical Society Reviews. Sep, 2014 | Pubmed ID: 24901032 A Differential Fluorescent Receptor for Nucleic Acid Analysis Chembiochem : a European Journal of Chemical Biology. Jan, 2014 | Pubmed ID: 24339354 Deoxyribozyme Cascade for Visual Detection of Bacterial RNA Chembiochem : a European Journal of Chemical Biology. Nov, 2013 | Pubmed ID: 24106198 Folding of 16S RRNA in a Signal-producing Structure for the Detection of Bacteria Angewandte Chemie (International Ed. in English). Sep, 2013 | Pubmed ID: 24038733 SNP Analysis Using a Molecular Beacon-based Operating Cooperatively (OC) Sensor Methods in Molecular Biology (Clifton, N.J.). 2013 | Pubmed ID: 24026687 Detection of SNP-containing Human DNA Sequences Using a Split Sensor with a Universal Molecular Beacon Reporter Methods in Molecular Biology (Clifton, N.J.). 2013 | Pubmed ID: 24026686 Operating Cooperatively (OC) Sensor for Highly Specific Recognition of Nucleic Acids PloS One. 2013 | Pubmed ID: 23441157 Two-component Covalent Inhibitor Bioorganic & Medicinal Chemistry. Apr, 2013 | Pubmed ID: 23411398 Detection of Bacterial 16S RRNA Using a Molecular Beacon-based X Sensor Biosensors & Bioelectronics. Mar, 2013 | Pubmed ID: 23021850 An Elegant Biosensor Molecular Beacon Probe: Challenges and Recent Solutions Scientifica. 2012 | Pubmed ID: 24278758 Molecular Logic Gates for DNA Analysis: Detection of Rifampin Resistance in M. Tuberculosis DNA Angewandte Chemie (International Ed. in English). Sep, 2012 | Pubmed ID: 22888076 Connectable DNA Logic Gates: OR and XOR Logics Chemistry, an Asian Journal. Mar, 2012 | Pubmed ID: 22213731 DNA Nanotechnology for Nucleic Acid Analysis: DX Motif-based Sensor Chembiochem : a European Journal of Chemical Biology. Nov, 2011 | Pubmed ID: 22006680 Molecular-beacon-based Tricomponent Probe for SNP Analysis in Folded Nucleic Acids Chemistry (Weinheim an Der Bergstrasse, Germany). Nov, 2011 | Pubmed ID: 21956816 Enzyme-assisted Binary Probe for Sensitive Detection of RNA and DNA Chemical Communications (Cambridge, England). Dec, 2010 | Pubmed ID: 20967321 Real-time SNP Analysis in Secondary-structure-folded Nucleic Acids Angewandte Chemie (International Ed. in English). Nov, 2010 | Pubmed ID: 20963740 A Single Molecular Beacon Probe is Sufficient for the Analysis of Multiple Nucleic Acid Sequences Chembiochem : a European Journal of Chemical Biology. Aug, 2010 | Pubmed ID: 20665615 Binary Probes for Nucleic Acid Analysis Chemical Reviews. Aug, 2010 | Pubmed ID: 20583806 Molecular Logic Gates Connected Through DNA Four-way Junctions Angewandte Chemie (International Ed. in English). Jun, 2010 | Pubmed ID: 20458718 RNA-cleaving Deoxyribozyme Sensor for Nucleic Acid Analysis: the Limit of Detection Chembiochem : a European Journal of Chemical Biology. Apr, 2010 | Pubmed ID: 20301161 Nucleic Acid Detection Using MNAzymes Chemistry & Biology. Feb, 2010 | Pubmed ID: 20189100 Triple-stem DNA Probe: a New Conformationally Constrained Probe for SNP Typing Chembiochem : a European Journal of Chemical Biology. Jun, 2009 | Pubmed ID: 19444831 DNAzyme 10-23 - Based Nanomachines for Nucleic Acid Recognition Pavel V. Filatov1, Muhannad Ateiah1, Maria Y. Berezovskaya1, Maria S. Rubel1, Dmitry M. Kolpashchikov2 1ITMO University, 2University of Central Florida JoVE 66461 Bioquímica
DNAzyme 10-23 - Based Nanomachines for Nucleic Acid Recognition Pavel V. Filatov1, Muhannad Ateiah1, Maria Y. Berezovskaya1, Maria S. Rubel1, Dmitry M. Kolpashchikov2 1ITMO University, 2University of Central Florida JoVE 66461 Bioquímica