Name: knockout mice and gene replacement
Uploaded: 2026-08-26T08:20:04.844Z
Duration: 2 min 29 s
Channel: JoVE

- [Anlat&#x131;c&#x131;] Bilim insanlar&#x131; hayvanlarda, genellikle farelerde bir geni inaktif h&#xE2;le getirerek ya da &#xE7;&#x131;kararak genin i&#x15F;levi hakk&#x131;nda bilgi edinebilirler, genellikle tasarlanm&#x131;&#x15F; bir DNA par&#xE7;as&#x131; olan bir hedefleme vekt&#xF6;r&#xFC;yle de&#x11F;i&#x15F;tirirler.
 Hedefleme vekt&#xF6;r&#xFC;n&#xFC;n, gen &#xF6;nce ve sonras&#x131;ndaki dizilerle homolog, ayn&#x131; olan dizileri vard&#x131;r.
 Genelde ortada neomisin direnci geni NeoR gibi bir pozitif i&#x15F;aretleyicisi bulunur, bir ucunda da timidin kinaz geni TK gibi bir negatif i&#x15F;aretleyicisi bulunur.
Embriyonik k&#xF6;k h&#xFC;crelere sokuldu&#x11F;unda homolog rekombinasyon yoluyla genin yerini al&#x131;r, bu s&#xFC;re&#xE7; benzer dizili DNA par&#xE7;alar&#x131; aras&#x131;nda do&#x11F;al ger&#xE7;ekle&#x15F;ir.
 Genin do&#x11F;ru de&#x11F;i&#x15F;tirildi&#x11F;i yerlerde pozitif i&#x15F;aretleyici varken negatif i&#x15F;aretleyici olmaz, bu da k&#xFC;lt&#xFC;rde tan&#x131;nmalar&#x131;n&#x131; sa&#x11F;lar.
 Daha sonra bu h&#xFC;creler fare embriyosuna enjekte edilir ve di&#x15F;i rahmine yerle&#x15F;tirilir.
Sonu&#xE7;ta ortaya &#xE7;&#x131;kan farede normal h&#xFC;crelerle bir kromozomda at&#x131;lm&#x131;&#x15F; genleri olan h&#xFC;creler bir arada bulunur.
 Daha sonra bu fareler &#xE7;iftle&#x15F;tirilerek t&#xFC;m h&#xFC;crelerinde homozigot olarak at&#x131;lm&#x131;&#x15F; gen ta&#x15F;&#x131;yan nakavt fareler elde edilir.

Hall, Bradford, Advait Limaye ve Ashok B Kulkarni. "Genel Bakış: Gen Nakavt Farelerinin Üretimi." Hücre Biyolojisinde Güncel Protokoller / Yayın Kurulu, Juan S. Bonifacino ... [ve ark.] BÖLÜM (Eylül 2009): Ünite-19.1217. [<a href="https://doi.org/10.1002/0471143030.cb1912s44" target="__blank">Kaynak</a>]

in-vitro mutajenez

In-vitro Mutagenesis (Gene Knockouts)

&#x22;Bir genin i&#x15F;levi hakk&#x131;nda daha fazla bilgi edinmek i&#xE7;in, ara&#x15F;t&#x131;rmac&#x131;lar geneti&#x11F;i de&#x11F;i&#x15F;tirilmi&#x15F; nakavt hayvanlar olu&#x15F;turarak gen inaktive veya &#x22;nakavt&#x22; durumlar&#x131; g&#xF6;zlemleyebilirler. Nakavt fareler, kanser, Parkinson hastal&#x131;&#x11F;&#x131; ve diyabet gibi insan hastal&#x131;klar&#x131; i&#xE7;in &#xF6;zellikle faydal&#x131; modeller olmu&#x15F;tur.

<h4>S&#xFC;re&#xE7;</h4>

Genler rastgele nakavt edilebilir veya belirli genler hedeflenebilir. Belirli bir geni yok etmek i&#xE7;in, hedef vekt&#xF6;r ad&#x131; verilen tasarlanm&#x131;&#x15F; bir DNA par&#xE7;as&#x131; normal genin yerini al&#x131;r ve bu da geni etkisiz hale getirmek i&#xE7;in kullan&#x131;l&#x131;r.

Hedefleme vekt&#xF6;rlerinin her iki ucunda, ilgi geninin her iki taraf&#x131;n&#x131; &#xE7;evreleyen dizilerle &#xF6;zde&#x15F; veya homolog diziler vard&#x131;r. Bu homolog diziler, hedefleme vekt&#xF6;r&#xFC;ne, miyoz s&#x131;ras&#x131;nda benzer dizilerle DNA aras&#x131;nda do&#x11F;al olarak olu&#x15F;an homolog rekombinasyon yoluyla genin yerini almas&#x131;na olanak sa&#x11F;lar.

 Hedefleme vekt&#xF6;r&#xFC;, elektroporasyon (h&#xFC;cre zar&#x131;nda ge&#xE7;ici olarak g&#xF6;zenekler olu&#x15F;turmak i&#xE7;in elektrik darbelerinin kullan&#x131;lmas&#x131;) gibi y&#xF6;ntemler kullan&#x131;larak k&#xFC;lt&#xFC;rdeki fare embriyonik k&#xF6;k h&#xFC;crelerine sokulur. Tipik olarak, vekt&#xF6;r&#xFC;n geni d&#xFC;zg&#xFC;n bir &#x15F;ekilde de&#x11F;i&#x15F;tirdi&#x11F;i h&#xFC;creleri tan&#x131;mlamak i&#xE7;in, homolog b&#xF6;lgeler aras&#x131;nda neomisin direnci (NeoR)&#x2014; geni gibi pozitif bir se&#xE7;im belirteci ve homolog b&#xF6;lgelerden sonra viral timidin kizaz (TK) geni gibi negatif bir se&#xE7;im belirteci i&#xE7;erecek &#x15F;ekilde tasarlan&#x131;rlar.

H&#xFC;creler neomisine maruz b&#x131;rak&#x131;l&#x131;rlar ve sadece vekt&#xF6;r&#xFC; DNA&#x27;lar&#x131;na dahil olanlar hayatta kal&#x131;rlar &#xE7;&#xFC;nk&#xFC; bu h&#xFC;creler NeoR genine sahiptirler. Ayr&#x131;ca, vekt&#xF6;r&#xFC;n homolog rekombinasyon yoluyla hedeflenen genin yerini ald&#x131;&#x11F;&#x131; h&#xFC;creler, TK genine sahip olmad&#x131;klar&#x131;ndan gansiklovir ilac&#x131; varl&#x131;&#x11F;&#x131;nda hayatta kalabilirler. Bu nedenle vekt&#xF6;r&#xFC; rastgele &#x15F;ekilde genomlar&#x131;na ekleyen h&#xFC;creler, TK genine sahip olduklar&#x131;ndan gansiklovir maruziyeti ile yok edilebilirler.

Geni d&#xFC;zg&#xFC;n bir &#x15F;ekilde nakavt edilen h&#xFC;creler daha sonra bir fare embriyosuna yerle&#x15F;tirilir, ve ard&#x131;ndan bu embriyo bir di&#x15F;inin rahmine yerle&#x15F;tirilir ve do&#x11F;uma kadar geli&#x15F;ir. Ortaya &#xE7;&#x131;kan fare bir kimerad&#x131;r, yani baz&#x131; h&#xFC;creleri embriyodan gelen normal DNA&#x2019;lar&#x131; i&#xE7;erirken, baz&#x131; h&#xFC;creleri ise gen vakavt kromozom par&#xE7;alar&#x131; i&#xE7;erir. Bu fareler yeti&#x15F;tirilir ve ilgili geni i&#xE7;eren yavrular, her h&#xFC;crenin nakavt i&#xE7;in homozigot oldu&#x11F;u bir fare hatt&#x131; olu&#x15F;turmak i&#xE7;in birbiriyle &#xE7;aprazlan&#x131;rlar. Bu nakavt fareler daha sonra gen fonksiyonu &#xE7;al&#x131;&#x15F;mak i&#xE7;in kullan&#x131;labilir.&#x22;

In-vitro Mutajenez

To learn more about the function of a gene, researchers can observe what happens when the gene is inactivated or &#x201C;knocked out,&#x201D; by creating ...

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knockout mice and gene replacement

Knockout mice help researchers study gene function by showing what happens when a gene is turned off. These engineered animals are also useful for modeling human diseases such as cancer, Parkinson’s disease, and diabetes.

A specific gene can be targeted by using a targeting vector, which is a piece of engineered DNA that replaces the normal gene and inactivates it. The vector has matching DNA sequences on both ends. These homologous sequences let the vector swap in for the target gene through homologous recombination, a natural process that happens between similar DNA sequences during meiosis.

Scientists introduce the targeting vector into mouse embryonic stem cells in culture, often by electroporation. Electroporation uses electric pulses to make temporary pores in the cell membrane. The vector is usually built with a positive selection marker, such as the neomycin resistance gene (NeoR), between the homologous regions. It also includes a negative selection marker, such as viral thymidine kinase (TK), after one homologous region.

The cells are treated with neomycin, and only cells that took up the vector survive because they carry NeoR. Cells in which the vector replaced the target gene by homologous recombination survive ganciclovir treatment because they do not have TK. Ganciclovir removes cells in which the vector inserted randomly into the genome, since those cells still carry TK.

The correctly targeted cells are then placed into a mouse embryo. The embryo is implanted into the uterus of a female and allowed to develop until birth. The mouse that results is a chimera, which means it contains a mixture of cells. Some cells come from the original embryo, and some come from the engineered stem cells with one knocked-out chromosome.

These mice are bred, and offspring with the knockout in their germline are crossbred again. This creates a mouse line in which every cell is homozygous for the knockout. Researchers can then use these knockout mice to study the function of the gene.

Knockout Mice and Gene Replacement

what is genetic engineering?

How Scientists Edit DNA for New Traits

Genetic engineering changes an organism’s DNA to add useful traits. Scientists use it in bacteria, plants, animals, and even viruses for research, medicine, agriculture, and industry. It can bring major benefits, but it also raises ethical concerns about humans and the food supply. This work is possible because DNA has the same basic structure and genetic code across life. That shared code lets scientists modify DNA in several ways. One method is CRISPR/Cas9, often called molecular scissors,...

dna isolation

Steps in DNA Extraction

DNA extraction is the process of removing and purifying DNA from cells. It is used in many biotechnology and research applications, including molecular cloning. The main goal is to free DNA from the cell and prepare it for later study or use. The first step is cell lysis, which means breaking cells open. Researchers may use a homogenizer, sonicator, or bead beater to physically lyse the cells. They also often add detergent to chemically disrupt the lipid-based cell membranes. This helps...

recombinant dna technology

Recombinant DNA in Cloning and GMOs

Recombinant DNA is made by joining DNA from different sources in the lab. Scientists often use it to clone genes and study them in cells that are easy to handle, such as bacteria. Organisms that carry recombinant DNA are called genetically modified organisms, or GMOs. This technology gives scientists new tools for research, medicine, and agriculture. To build recombinant DNA, researchers place a gene of interest into a vector, which is a DNA carrier that moves foreign DNA into a host cell. The...

PCR Cycle for DNA Amplification

PCR is a laboratory method for making many copies of a DNA segment. It can turn a small amount of DNA into millions or even billions of copies in just a few hours. The process uses a heat-resistant DNA polymerase inside a machine called a thermocycler. PCR was developed by Kary Mullis in 1983, and he received the 1993 Nobel Prize in Chemistry for it. The method is fast, relatively inexpensive, and precise. It has become useful for molecular cloning, gene mutagenesis, pathogen detection, gene...

complementary dna

From mRNA to cDNA for Gene Studies

Complementary DNA, or cDNA, is made from messenger RNA (mRNA) so scientists can study which genes are active in cells and tissues. Only genes that are transcribed into mRNA are expressed. By extracting mRNA from cells, researchers can compare gene expression across samples. cDNA is produced by reverse transcription. This process copies mRNA into DNA, which is useful because mRNA does not contain introns, or non-coding regions, and other regulatory sequences. As a result, cDNA can help...

antibiotic selection

Antibiotic Resistance in Cloning

Antibiotic resistance genes help scientists find bacteria that took up a plasmid with a gene of interest. In genetic engineering, this resistance is used as a marker, not just as a medical concern. The same process also connects to the growing problem of resistant bacteria in the real world. Antibiotics, such as penicillin, stop bacterial growth or kill bacteria. When bacteria naturally have, or are engineered to carry, an antibiotic resistance gene, the antibiotic no longer works on them.

transgenic organisms

Creating Transgenic Plants and Animals

Transgenic organisms are genetically engineered to carry a transgene, which is a gene from a different species, in their genome. The inserted gene may be a new gene for that organism or a different version of one it already has. Scientists usually make transgenes with recombinant DNA and DNA cloning methods. Researchers use transgenic bacteria, plants, and animals to answer biological questions and to build useful tools. To make a transgenic organism, they first choose a transgenesis method,...

in-vitro mutagenesis (gene knockouts)

Knockout mice help researchers study gene function by showing what happens when a gene is turned off. These engineered animals are also useful for modeling human diseases such as cancer, Parkinson’s disease, and diabetes. A specific gene can be targeted by using a targeting vector, which is a piece of engineered DNA that replaces the normal gene and inactivates it. The vector has matching DNA sequences on both ends. These homologous sequences let the vector swap in for the target gene through...

crispr

CRISPR-Cas9 Gene Editing in Action

CRISPR-Cas9 is a genome editing tool that lets scientists change DNA at a specific location. It can add, remove, or rearrange genetic material. Researchers study it because it may help treat genetic disorders such as hemophilia and sickle cell anemia. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats, and Cas9 is a CRISPR-associated protein 9. The basic system includes a Cas9 endonuclease, which is an enzyme that cuts DNA, and a small RNA that guides Cas9 to the...

gene therapy

Gene Delivery for Serious Diseases

Gene therapy is a technique used to treat serious disease by adding a gene to a person’s cells. The added gene may be a healthy copy of a mutated gene. It may also be a different gene that inactivates or compensates for the disease-causing gene. One example is severe combined immunodeficiency, or SCID, caused by a mutation in the gene for adenosine deaminase. In that case, a working copy of the gene can be inserted so the patient’s cells make the enzyme again. This can cure the disease in some...

embryonic stem cells

How Embryonic Stem Cells Become Specialized

Embryonic stem cells are pluripotent cells that have not yet specialized. Pluripotent means they can give rise to many different cell types in the body. Because of this, they are useful in science and medicine for making cells needed in research or for replacing cells lost to damage or disease. These cells come from the inner cell mass of a blastocyst, which is an early embryo about 3 to 5 days after fertilization in humans. At this stage, the embryo has not yet implanted in the uterus. Human...

adult stem cells

Adult Stem Cells in the Small Intestine

Adult stem cells help maintain tissues by replacing old or damaged cells. These undifferentiated cells divide to make more stem cells or progenitor cells, which then become mature, specialized cells. Small groups of adult stem cells are found in many tissues, including the bone marrow, brain, skin, and gut. The small intestine shows this process clearly. Its lining, called the epithelium, is renewed continuously by adult stem cells. It is also the fastest replaced tissue in the human body,...

induced pluripotent stem cells

Reprogramming Mature Cells into Stem Cells

Reprogramming mature cells into stem cells lets scientists turn specialized cells back into an unspecialized state. These cells are called induced pluripotent stem cells, or iPSCs. Like embryonic stem cells, iPSCs are pluripotent, which means they can form all cell types. To make iPSCs, researchers start with mature cells such as skin fibroblasts or blood cells. The cells are grown in culture, and genes for several transcription factors are delivered with a viral vector. The cells then make...

reproductive cloning

Cloning Animals with SCNT

Reproductive cloning can produce a genetically identical copy of an entire organism. In adult animals, this is usually done with somatic cell nuclear transfer, or SCNT. Another way clones can form is by splitting an early embryo, which is similar to how identical twins arise naturally. In SCNT, an egg cell is taken from an animal and its nucleus is removed. This creates an enucleated egg. A somatic cell, which is any body cell that is not a sex cell, is then taken from the animal to be cloned.

genomics

Genomics and DNA Sequencing

Genomics studies the full set of genetic material in an organism. In humans, that genome includes the DNA carried in 23 pairs of chromosomes in the nucleus, along with mitochondrial DNA. Genomics looks at both coding DNA and non-coding DNA, which helps scientists study how living things are built and how they differ. This field is useful in many areas of biology and medicine. Scientists use genomics to build phylogenetic trees, improve crop productivity and sustainability, help with criminal...

key terms and concepts

See how targeting vectors replace a gene in mouse stem cells, how selection markers work, and how knockout mice are bred for gene function studies.

Knockout Mice and Gene Replacement | JoVE K12

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JoVE Core serisi, biyolojinin ana konseptlerini açıklayan 300 adet kısa ve kolay anlaşılabilir olan video dersleriyle ve günümüz laboratuvarlarında yürütülen gerçek araştırmaları gösteren 150'den fazla \"bilim insanları iş başında\" videolarıyla biyolojiye hayat vermektedir.

Knockout Mice and Gene Replacement

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