Chris Bailey-Kellogg

Department of Computer Science, Dartmouth College

Research Area

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JoVE Journal Publications

ArticleTotal : 1	Year
Publication title Cited by 21	2014

Other Publications

Article	Year
A subgroup algorithm to identify cross-rotation peaks consistent with non-crystallographic symmetry. Acta crystallographica. Section D, Biological crystallography\| PubMed ID: 15159565	2004
Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure. Protein science : a publication of the Protein Society\| PubMed ID: 15557270	2004
Analysis of sequence-reactivity space for protein-protein interactions. Proteins\| PubMed ID: 15624216	2005
A random graph approach to NMR sequential assignment. Journal of computational biology : a journal of computational molecular cell biology\| PubMed ID: 16108704	2005
Reconsidering complete search algorithms for protein backbone NMR assignment. Bioinformatics (Oxford, England)\| PubMed ID: 16204110	2005
An efficient randomized algorithm for contact-based NMR backbone resonance assignment. Bioinformatics (Oxford, England)\| PubMed ID: 16287932	2006
Functional evolution within a protein superfamily. Proteins\| PubMed ID: 16463276	2006
Model-based assignment and inference of protein backbone Nuclear Magnetic Resonances. Statistical applications in genetics and molecular biology\| PubMed ID: 16646822	2004
Site-directed combinatorial construction of chimaeric genes: general method for optimizing assembly of gene fragments. Proteins\| PubMed ID: 16783818	2006
Inferential backbone assignment for sparse data. Journal of biomolecular NMR\| PubMed ID: 16855861	2006
Structure determination of symmetric homo-oligomers by a complete search of symmetry configuration space, using NMR restraints and van der Waals packing. Proteins\| PubMed ID: 16897780	2006
A complete algorithm to resolve ambiguity for intersubunit NOE assignment in structure determination of symmetric homo-oligomers. Protein science : a publication of the Protein Society\| PubMed ID: 17192589	2007
Hypergraph model of multi-residue interactions in proteins: sequentially-constrained partitioning algorithms for optimization of site-directed protein recombination. Journal of computational biology : a journal of computational molecular cell biology\| PubMed ID: 17691894	2007
Algorithms for selecting breakpoint locations to optimize diversity in protein engineering by site-directed protein recombination. Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference\| PubMed ID: 17951810	2007
Robotic hierarchical mixing for the production of combinatorial libraries of proteins and small molecules. Journal of combinatorial chemistry\| PubMed ID: 18072752	2008
Analysis of self-associating proteins by singular value decomposition of solution scattering data. Biophysical journal\| PubMed ID: 18212017	2008
Graphical models of residue coupling in protein families. IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM\| PubMed ID: 18451428	2008
Contact replacement for NMR resonance assignment. Bioinformatics (Oxford, England)\| PubMed ID: 18586716	2008
Graphical models of protein-protein interaction specificity from correlated mutations and interaction data. Proteins\| PubMed ID: 19306342	2009
Optimizing Bayes error for protein structure model selection by stability mutagenesis. Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference\| PubMed ID: 19642272	2008
Protein design by sampling an undirected graphical model of residue constraints. IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM\| PubMed ID: 19644177	2009
Algorithms for joint optimization of stability and diversity in planning combinatorial libraries of chimeric proteins. Journal of computational biology : a journal of computational molecular cell biology\| PubMed ID: 19645597	2009
Protein fragment swapping: a method for asymmetric, selective site-directed recombination. Journal of computational biology : a journal of computational molecular cell biology\| PubMed ID: 20377457	2010
Optimization algorithms for functional deimmunization of therapeutic proteins. BMC bioinformatics\| PubMed ID: 20380721	2010
Characterizing the space of interatomic distance distribution functions consistent with solution scattering data. Journal of bioinformatics and computational biology\| PubMed ID: 20401948	2010
Accounting for conformational entropy in predicting binding free energies of protein-protein interactions. Proteins\| PubMed ID: 21120864	2011
A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers. Protein science : a publication of the Protein Society\| PubMed ID: 21413097	2011
Optimization of therapeutic proteins to delete T-cell epitopes while maintaining beneficial residue interactions. Journal of bioinformatics and computational biology\| PubMed ID: 21523929	2011
NMR structural inference of symmetric homo-oligomers. Journal of computational biology : a journal of computational molecular cell biology\| PubMed ID: 21718128	2011
Optimization of combinatorial mutagenesis. Journal of computational biology : a journal of computational molecular cell biology\| PubMed ID: 21923411	2011
A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs. Journal of computational biology : a journal of computational molecular cell biology\| PubMed ID: 22035328	2011
Planning combinatorial disulfide cross-links for protein fold determination. BMC bioinformatics\| PubMed ID: 22168447	2011
A divide-and-conquer approach to determine the Pareto frontier for optimization of protein engineering experiments. Proteins\| PubMed ID: 22180081	2012
MMFPh: a maximal motif finder for phosphoproteomics datasets. Bioinformatics (Oxford, England)\| PubMed ID: 22531218	2012
Algorithms for optimizing cross-overs in DNA shuffling. BMC bioinformatics\| PubMed ID: 22536901	2012
Rapid determination of multiple linear kinase substrate motifs by mass spectrometry. Chemistry & biology\| PubMed ID: 22633412	2012
Design and analysis of immune-evading enzymes for ADEPT therapy. Protein engineering, design & selection : PEDS\| PubMed ID: 22898588	2012
High-throughput, multiplexed IgG subclassing of antigen-specific antibodies from clinical samples. Journal of immunological methods\| PubMed ID: 23023091	2012
Structure-based redesign of proteins for minimal T-cell epitope content. Journal of computational chemistry\| PubMed ID: 23299435	2013
Ballast: a ball-based algorithm for structural motifs. Journal of computational biology : a journal of computational molecular cell biology\| PubMed ID: 23383999	2013
Structure-guided deimmunization of therapeutic proteins. Journal of computational biology : a journal of computational molecular cell biology\| PubMed ID: 23384000	2013
Natural variation in Fc glycosylation of HIV-specific antibodies impacts antiviral activity. The Journal of clinical investigation\| PubMed ID: 23563315	2013
The two-faced T cell epitope: examining the host-microbe interface with JanusMatrix. Human vaccines & immunotherapeutics\| PubMed ID: 23584251	2013
Bayesian reconstruction of P(r) directly from two-dimensional detector images via a Markov chain Monte Carlo method. Journal of applied crystallography\| PubMed ID: 23596342	2013
Improved Multiple Sequence Alignments Using Coupled Pattern Mining. IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM\| PubMed ID: 23648590	2013
Divergent Antibody Subclass and Specificity Profiles but Not Protective HLA-B Alleles Are Associated with Variable Antibody Effector Function among HIV-1 Controllers. Journal of virology\| PubMed ID: 24352471	2014
Improved multiple sequence alignments using coupled pattern mining. IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM\| PubMed ID: 24384701	2013
Gene and protein sequence optimization for high level production of fully active and aglycosylated lysostaphin in Pichia pastoris. Applied and environmental microbiology\| PubMed ID: 24561590	2014
Polyfunctional Fc-Effector Profiles Mediated by IgG Subclass Selection Distinguish RV144 and VAX003 Vaccines. Science translational medicine\| PubMed ID: 24648341	2014