Emad Tajkhorshid

Emad Tajkhorshid

Department of Biochemistry, University of Illinois at Urbana-Champaign

Affiliated withUniversity of Illinois at Urbana-Champaign

Research Area

Biography

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JoVE Journal Publications

ArticleTotal : 1
Year
Use of Microscale Thermophoresis to Measure Protein-Lipid Interactions
Publication title

Cited by 8

2022

Other Publications

Article
Year
Control of the selectivity of the aquaporin water channel family by global orientational tuning.

Science (New York, N.Y.)| PubMed ID: 11964478

2002
Energetics of glycerol conduction through aquaglyceroporin GlpF.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 11997475

2002
2002
2002
2002
Developing an energy landscape for the novel function of a (beta/alpha)8 barrel: ammonia conduction through HisF.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 12799468

2003
2003
2003
2003
Theory and simulation of water permeation in aquaporin-1.

Biophysical journal| PubMed ID: 14695248

2004
Classical force field parameters for the heme prosthetic group of cytochrome c.

Journal of computational chemistry| PubMed ID: 15264255

2004
2004
Molecular dynamics simulations of proteins in lipid bilayers.

Current opinion in structural biology| PubMed ID: 16043343

2005
What makes an aquaporin a glycerol channel? A comparative study of AqpZ and GlpF.

Structure (London, England : 1993)| PubMed ID: 16084383

2005
Scalable molecular dynamics with NAMD.

Journal of computational chemistry| PubMed ID: 16222654

2005
Dynamics of K+ ion conduction through Kv1.2.

Biophysical journal| PubMed ID: 16844753

2006
2006
2006
2007
2007
2007
2007
2008
2008
2008
2008
2008
2008
2008
Electrostatic funneling of substrate in mitochondrial inner membrane carriers.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 18621725

2008
2008
Blood clotting reactions on nanoscale phospholipid bilayers.

Thrombosis research| PubMed ID: 18691494

2008
2008
2008
2009
Molecular dynamics simulations of membrane channels and transporters.

Current opinion in structural biology| PubMed ID: 19345092

2009
2009
2009
2010
Ion-releasing state of a secondary membrane transporter.

Biophysical journal| PubMed ID: 19948113

2009
2010
Protein-phospholipid interactions in blood clotting.

Thrombosis research| PubMed ID: 20129649

2010
2010
Dynamical view of membrane binding and complex formation of human factor VIIa and tissue factor.

Journal of thrombosis and haemostasis : JTH| PubMed ID: 20180816

2010
2010
Exploring transmembrane diffusion pathways with molecular dynamics.

Physiology (Bethesda, Md.)| PubMed ID: 20551228

2010
2010
Interplay of mechanical and binding properties of Fibronectin type I.

Theoretical chemistry accounts| PubMed ID: 20824113

2010
2010
2010
2010
2011
2011
2011
2012
2012
2012
2012
Structure and permeation mechanism of a mammalian urea transporter.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 22733730

2012
2012
Simulation studies of the mechanism of membrane transporters.

Methods in molecular biology (Clifton, N.J.)| PubMed ID: 23034756

2013
2013
Transient formation of water-conducting states in membrane transporters.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 23610412

2013
On the origin of large flexibility of P-glycoprotein in the inward-facing state.

The Journal of biological chemistry| PubMed ID: 23658020

2013
2013
Capturing Functional Motions of Membrane Channels and Transporters with Molecular Dynamics Simulation.

Journal of computational and theoretical nanoscience| PubMed ID: 23710155

2010
2013
2013
Rapid parameterization of small molecules using the Force Field Toolkit.

Journal of computational chemistry| PubMed ID: 24000174

2013
Mechanistic picture for conformational transition of a membrane transporter at atomic resolution.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 24191018

2013
A microscopic view of phospholipid insertion into biological membranes.

The journal of physical chemistry. B| PubMed ID: 24313792

2014
Water access points and hydration pathways in CLC H+/Cl- transporters.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 24379362

2014
Partitioning of amino acids into a model membrane: capturing the interface.

The journal of physical chemistry. B| PubMed ID: 24451004

2014
2014
2014
Conformational heterogeneity of α-synuclein in membrane.

Biochimica et biophysica acta| PubMed ID: 25135664

2014
Conformational coupling between the active site and residues within the K(C)-channel of the Vibrio cholerae cbb3-type (C-family) oxygen reductase.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 25288772

2014
Atomistic models of general anesthetics for use in in silico biological studies.

The journal of physical chemistry. B| PubMed ID: 25303275

2014
2014
2014
2015
2015
2015
2015
Efficient Exploration of Membrane-Associated Phenomena at Atomic Resolution.

The Journal of membrane biology| PubMed ID: 25998378

2015
Structural Determinants of the Mechanical Stability of α-Catenin.

The Journal of biological chemistry| PubMed ID: 26070562

2015
2015
2015
2015
2016
2016
2016
2016
2016
2016
2016
2016
2016
TopoGromacs: Automated Topology Conversion from CHARMM to GROMACS within VMD.

Journal of chemical information and modeling| PubMed ID: 27196035

2016
2016
2016
2016
2016
2016
2017
2017
Mass spectrometry-based cross-linking study shows that the Psb28 protein binds to cytochrome in Photosystem II.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 28193857

2017
2017
2017
2017
Tribute to Klaus Schulten.

The journal of physical chemistry. B| PubMed ID: 28423902

2017
2017
Lipid specificity of the membrane binding domain of coagulation factor X.

Journal of thrombosis and haemostasis : JTH| PubMed ID: 28782177

2017
2017
2017
2017
Chasing the open-state structure of pentameric ligand-gated ion channels.

The Journal of general physiology| PubMed ID: 29089419

2017
2018
2018
Molecular insight into drug exporters within the cellular membrane.

Pharmacological research| PubMed ID: 29535020

2018
2018
2018
A "cross-stitched" peptide with improved helicity and proteolytic stability.

Organic & biomolecular chemistry| PubMed ID: 29725689

2018
2018
2018
Electrostatic lock in the transport cycle of the multidrug resistance transporter EmrE.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 30026196

2018
2018
Microscopic view of lipids and their diverse biological functions.

Current opinion in structural biology| PubMed ID: 30048836

2018
2018
Selective Permeability of Carboxysome Shell Pores to Anionic Molecules.

The journal of physical chemistry. B| PubMed ID: 30193460

2018
2018
2018
2018
2018
2018
2019
2018
2019
2019
2019
Structural Insights into the Lipid A Transport Pathway in MsbA.

Structure (London, England : 1993)| PubMed ID: 31130486

2019
2019
A network of phosphatidylinositol 4,5-bisphosphate binding sites regulates gating of the Ca-activated Cl channel ANO1 (TMEM16A).

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 31515451

2019
A Chalcogen-Bonding Cascade Switch for Planarizable Push-Pull Probes.

Angewandte Chemie (International ed. in English)| PubMed ID: 31539191

2019
2019
Probing cholesterol binding and translocation in P-glycoprotein.

Biochimica et biophysica acta. Biomembranes| PubMed ID: 31676371

2020
2019
Microscopic Characterization of GRP1 PH Domain Interaction with Anionic Membranes.

Journal of computational chemistry| PubMed ID: 31762060

2020
2019
Computational Dissection of Membrane Transport at a Microscopic Level.

Trends in biochemical sciences| PubMed ID: 31813734

2020
An Activity-Based Sensing Approach for the Detection of Cyclooxygenase-2 in Live Cells.

Angewandte Chemie (International ed. in English)| PubMed ID: 31854058

2020
2019
Cryo-EM structures of a lipid-sensitive pentameric ligand-gated ion channel embedded in a phosphatidylcholine-only bilayer.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 31911476

2020
2020
2019
2020
2020
2020
2020
2020
Scalable molecular dynamics on CPU and GPU architectures with NAMD.

The Journal of chemical physics| PubMed ID: 32752662

2020
Boosting Free-Energy Perturbation Calculations with GPU-Accelerated NAMD.

Journal of chemical information and modeling| PubMed ID: 32805108

2020
2020
2020
Knockout of VDAC1 in H9c2 Cells Promotes Oxidative Stress-Induced Cell Apoptosis through Decreased Mitochondrial Hexokinase II Binding and Enhanced Glycolytic Stress.

Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology| PubMed ID: 32901466

2020
2020
2020
2020
2020
2020
2021
2020
2020
2020
Mechanical properties of ester- and ether-DPhPC bilayers: A molecular dynamics study.

Journal of the mechanical behavior of biomedical materials| PubMed ID: 33588213

2021
2021
Carbon dioxide transport across membranes.

Interface focus| PubMed ID: 33633837

2021
2021
Classical molecular dynamics.

The Journal of chemical physics| PubMed ID: 33722022

2021
Structural insights into photosystem II assembly.

Nature plants| PubMed ID: 33846594

2021
Cation-π Interactions and their Functional Roles in Membrane Proteins.

Journal of molecular biology| PubMed ID: 33957146

2021
2021
2019
2021
2021
2021
Calmodulin complexes with brain and muscle creatine kinase peptides.

Current research in structural biology| PubMed ID: 34235492

2021
2021
Cryo-EM structures of cytochrome reveal bound phospholipids and ubiquinone-8 in a dynamic substrate binding site.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 34417297

2021
Molecular mechanism of capsid disassembly in hepatitis B virus.

Proceedings of the National Academy of Sciences of the United States of America| PubMed ID: 34465620

2021
2021
2021
2021
Assembly and Analysis of Cell-Scale Membrane Envelopes.

Journal of chemical information and modeling| PubMed ID: 34910495

2021
2022
2022
2022
2022