Ruifu Zhang State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Institute of Agricultural Resources and Regional Planning Chinese Academy of Agricultural Sciences Biography Publications Institution JoVE Articles Ruifu Zhang has not added a biography. If you are Ruifu Zhang and would like to personalize this page please email our Author Liaison for assistance. Publications Root Colonization by Beneficial Rhizobacteria FEMS Microbiology Reviews. Jan, 2024 | Pubmed ID: 38093453 Signal Communication During Microbial Modulation of Root System Architecture Journal of Experimental Botany. Jan, 2024 | Pubmed ID: 37419655 Biocontrol Mechanisms of Bacillus: Improving the Efficiency of Green Agriculture Microbial Biotechnology. Dec, 2023 | Pubmed ID: 37837627 Investigating the Effect of Substrate Binding on the Catalytic Activity of Xylanase Applied Microbiology and Biotechnology. Nov, 2023 | Pubmed ID: 37715802 Novel Fatty Acids-governed Cannibalism in Beneficial Rhizosphere Bacillus Enhances Biofilm Formation Via a Two-component System OmpS/R and Toxin Transporter Science Bulletin. Jul, 2023 | Pubmed ID: 37402603 Listening to Plant's Esperanto Via Root Exudates: Reprogramming the Functional Expression of Plant Growth-promoting Rhizobacteria The New Phytologist. Sep, 2023 | Pubmed ID: 37357338 Plant Commensal Type VII Secretion System Causes Iron Leakage from Roots to Promote Colonization Nature Microbiology. Aug, 2023 | Pubmed ID: 37248429 Chemical Communication in Plant-microbe Beneficial Interactions: a Toolbox for Precise Management of Beneficial Microbes Current Opinion in Microbiology. Apr, 2023 | Pubmed ID: 36682279 Sustained Inhibition of Maize Seed-Borne Fusarium Using a Bacillus-Dominated Rhizospheric Stable Core Microbiota with Unique Cooperative Patterns Advanced Science (Weinheim, Baden-Wurttemberg, Germany). Feb, 2023 | Pubmed ID: 36529951 Rhizosphere Microbes Enhance Plant Salt Tolerance: Toward Crop Production in Saline Soil Computational and Structural Biotechnology Journal. 2022 | Pubmed ID: 36467579 Identification of the Core C-di-GMP Turnover Proteins Responsible for Root Colonization of IScience. Nov, 2022 | Pubmed ID: 36300004 Signal Binding at Both Modules of Its DCache Domain Enables the McpA Chemoreceptor of to Sense Different Ligands Proceedings of the National Academy of Sciences of the United States of America. Jul, 2022 | Pubmed ID: 35858353 Exploring the Multi-level Regulation of Lignocellulases in the Filamentous Fungus Trichoderma Guizhouense NJAU4742 from an Omics Perspective Microbial Cell Factories. Jul, 2022 | Pubmed ID: 35842666 Biosynthetic Gene Cluster Profiling Predicts the Positive Association Between Antagonism and Phylogeny in Bacillus Nature Communications. Feb, 2022 | Pubmed ID: 35197480 Nitrogen Fertilization Modulates Beneficial Rhizosphere Interactions Through Signaling Effect of Nitric Oxide Plant Physiology. Feb, 2022 | Pubmed ID: 34865137 The Volatile Cedrene from Trichoderma Guizhouense Modulates Arabidopsis Root Development Through Auxin Transport and Signalling Plant, Cell & Environment. Mar, 2022 | Pubmed ID: 34800291 Identification of Adhesins in Plant Beneficial Rhizobacteria SQR9 and Their Effect on Root Colonization Molecular Plant-microbe Interactions : MPMI. Jan, 2022 | Pubmed ID: 34698535 Bacillus Velezensis Stimulates Resident Rhizosphere Pseudomonas Stutzeri for Plant Health Through Metabolic Interactions The ISME Journal. Mar, 2022 | Pubmed ID: 34593997 Potassium Phosphite Enhances the Antagonistic Capability of to Manage Tomato Bacterial Wilt Plant Disease. Feb, 2022 | Pubmed ID: 34491099 Rhizosphere Microbiome: Functional Compensatory Assembly for Plant Fitness Computational and Structural Biotechnology Journal. 2021 | Pubmed ID: 34712394 Chemotaxis of Beneficial Rhizobacteria to Root Exudates: The First Step Towards Root-Microbe Rhizosphere Interactions International Journal of Molecular Sciences. Jun, 2021 | Pubmed ID: 34206311 Significantly Improving the Thermostability of a Hyperthermophilic GH10 Family Xylanase XynAF1 by Semi-rational Design Applied Microbiology and Biotechnology. Jun, 2021 | Pubmed ID: 34014347 Bacillus Velezensis Tolerance to the Induced Oxidative Stress in Root Colonization Contributed by the Two-component Regulatory System Sensor ResE Plant, Cell & Environment. Sep, 2021 | Pubmed ID: 33864643 Overcoming Diverse Homologous Recombinations and Single Chimeric Guide RNA Competitive Inhibition Enhances Cas9-based Cyclical Multiple Genes Coediting in Filamentous Fungi Environmental Microbiology. Jun, 2021 | Pubmed ID: 33754479 Volatile Compounds from Beneficial Rhizobacteria Bacillus Spp. Promote Periodic Lateral Root Development in Arabidopsis Plant, Cell & Environment. May, 2021 | Pubmed ID: 33548150 Specialized Metabolic Functions of Keystone Taxa Sustain Soil Microbiome Stability Microbiome. Jan, 2021 | Pubmed ID: 33517892 Quorum Sensing Signal Autoinducer-2 Promotes Root Colonization of Bacillus Velezensis SQR9 by Affecting Biofilm Formation and Motility Applied Microbiology and Biotechnology. Aug, 2020 | Pubmed ID: 32621125 A Predatory Myxobacterium Controls Cucumber Fusarium Wilt by Regulating the Soil Microbial Community Microbiome. Apr, 2020 | Pubmed ID: 32252828 Induced Root-secreted D-galactose Functions As a Chemoattractant and Enhances the Biofilm Formation of Bacillus Velezensis SQR9 in an McpA-dependent Manner Applied Microbiology and Biotechnology. Jan, 2020 | Pubmed ID: 31813049 Root-Secreted Spermine Binds to SQR9 Histidine Kinase KinD and Modulates Biofilm Formation Molecular Plant-microbe Interactions : MPMI. Mar, 2020 | Pubmed ID: 31741422 Antibiotic Bacillomycin D Affects Iron Acquisition and Biofilm Formation in Bacillus Velezensis Through a Btr-Mediated FeuABC-Dependent Pathway Cell Reports. Oct, 2019 | Pubmed ID: 31665633 Diversity-triggered Deterministic Bacterial Assembly Constrains Community Functions Nature Communications. Aug, 2019 | Pubmed ID: 31444343 Improvement of GH10 Family Xylanase Thermostability by Introducing of an Extra α-helix at the C-terminal Biochemical and Biophysical Research Communications. Jul, 2019 | Pubmed ID: 31160089 A Genomic Island in a Plant Beneficial Rhizobacterium Encodes Novel Antimicrobial Fatty Acids and a Self-protection Shield to Enhance Its Competition Environmental Microbiology. Sep, 2019 | Pubmed ID: 31106958 Cloning and Expression of a β-mannanase Gene from Bacillus Sp. MK-2 and Its Directed Evolution by Random Mutagenesis Enzyme and Microbial Technology. May, 2019 | Pubmed ID: 30797481 Microbulbifer Flavimaris Sp. Nov., a Halophilic Gammaproteobacteria Isolated from Marine Sediment of the Yellow Sea, China International Journal of Systematic and Evolutionary Microbiology. Apr, 2019 | Pubmed ID: 30777816 Wall Teichoic Acids Are Required for Biofilm Formation and Root Colonization Applied and Environmental Microbiology. Mar, 2019 | Pubmed ID: 30552189 Recognition of Dominant Attractants by Key Chemoreceptors Mediates Recruitment of Plant Growth-promoting Rhizobacteria Environmental Microbiology. Jan, 2019 | Pubmed ID: 30421582 Paracoccus Salipaludis Sp. Nov., Isolated from Saline-alkaline Soil International Journal of Systematic and Evolutionary Microbiology. Dec, 2018 | Pubmed ID: 30325298 Grazing-induced Microbiome Alterations Drive Soil Organic Carbon Turnover and Productivity in Meadow Steppe Microbiome. Sep, 2018 | Pubmed ID: 30236158 Synthesis and Detoxification of Nitric Oxide in the Plant Beneficial Rhizobacterium Bacillus Amyloliquefaciens SQR9 and Its Effect on Biofilm Formation Biochemical and Biophysical Research Communications. Sep, 2018 | Pubmed ID: 29913149 Identification of Chemotaxis Compounds in Root Exudates and Their Sensing Chemoreceptors in Plant-Growth-Promoting Rhizobacteria Bacillus Amyloliquefaciens SQR9 Molecular Plant-microbe Interactions : MPMI. Oct, 2018 | Pubmed ID: 29714096 Effect of CBM1 and Linker Region on Enzymatic Properties of a Novel Thermostable Dimeric GH10 Xylanase (Xyn10A) from Filamentous Fungus Aspergillus Fumigatus Z5 AMB Express. Mar, 2018 | Pubmed ID: 29564574 FtsEX-CwlO Regulates Biofilm Formation by a Plant-beneficial Rhizobacterium Bacillus Velezensis SQR9 Research in Microbiology. Apr, 2018 | Pubmed ID: 29427638 ResDE Two-Component Regulatory System Mediates Oxygen Limitation-Induced Biofilm Formation by Bacillus Amyloliquefaciens SQR9 Applied and Environmental Microbiology. Apr, 2018 | Pubmed ID: 29427424 Exploring Elicitors of the Beneficial Rhizobacterium Bacillus Amyloliquefaciens SQR9 to Induce Plant Systemic Resistance and Their Interactions With Plant Signaling Pathways Molecular Plant-microbe Interactions : MPMI. May, 2018 | Pubmed ID: 29309236 Ruegeria Profundi Sp. Nov. and Ruegeria Marisrubri Sp. Nov., Isolated from the Brine-seawater Interface at Erba Deep in the Red Sea International Journal of Systematic and Evolutionary Microbiology. Nov, 2017 | Pubmed ID: 29022541 Ponticoccus Marisrubri Sp. Nov., a Moderately Halophilic Marine Bacterium of the Family Rhodobacteraceae International Journal of Systematic and Evolutionary Microbiology. Nov, 2017 | Pubmed ID: 28984559 The Unseen Rhizosphere Root-soil-microbe Interactions for Crop Production Current Opinion in Microbiology. Jun, 2017 | Pubmed ID: 28433932 Beneficial Rhizobacterium Bacillus Amyloliquefaciens SQR9 Induces Plant Salt Tolerance Through Spermidine Production Molecular Plant-microbe Interactions : MPMI. May, 2017 | Pubmed ID: 28291380 Influence of Straw Incorporation with and Without Straw Decomposer on Soil Bacterial Community Structure and Function in a Rice-wheat Cropping System Applied Microbiology and Biotechnology. Jun, 2017 | Pubmed ID: 28197689 Identification of Root-Secreted Compounds Involved in the Communication Between Cucumber, the Beneficial Bacillus Amyloliquefaciens, and the Soil-Borne Pathogen Fusarium Oxysporum Molecular Plant-microbe Interactions : MPMI. Jan, 2017 | Pubmed ID: 27937752 Haloprofundus Marisrubri Gen. Nov., Sp. Nov., an Extremely Halophilic Archaeon Isolated from a Brine-seawater Interface International Journal of Systematic and Evolutionary Microbiology. Jan, 2017 | Pubmed ID: 27902200 Two Degradation Strategies for Overcoming the Recalcitrance of Natural Lignocellulosic Xylan by Polysaccharides-binding GH10 and GH11 Xylanases of Filamentous Fungi Environmental Microbiology. Mar, 2017 | Pubmed ID: 27878934 Characterization of Uncultured Genome Fragment from Soil Metagenomic Library Exposed Rare Mismatch of Internal Tetranucleotide Frequency Frontiers in Microbiology. 2016 | Pubmed ID: 28066395 Amino Acids Hydrolyzed from Animal Carcasses Are a Good Additive for the Production of Bio-organic Fertilizer Frontiers in Microbiology. 2016 | Pubmed ID: 27574521 Long-term Organic-inorganic Fertilization Ensures Great Soil Productivity and Bacterial Diversity After Natural-to-agricultural Ecosystem Conversion Journal of Microbiology (Seoul, Korea). Sep, 2016 | Pubmed ID: 27572510 Characterization of Extracellular Polymeric Substances of Bacillus Amyloliquefaciens SQR9 Induced by Root Exudates of Cucumber Journal of Basic Microbiology. Nov, 2016 | Pubmed ID: 27254757 Draft Genome Sequences of Two Thiomicrospira Strains Isolated from the Brine-Seawater Interface of Kebrit Deep in the Red Sea Genome Announcements. Mar, 2016 | Pubmed ID: 26966216 Draft Genome Sequence of Pseudoalteromonas Sp. Strain XI10 Isolated from the Brine-Seawater Interface of Erba Deep in the Red Sea Genome Announcements. Mar, 2016 | Pubmed ID: 26966209 Induced Maize Salt Tolerance by Rhizosphere Inoculation of Bacillus Amyloliquefaciens SQR9 Physiologia Plantarum. Sep, 2016 | Pubmed ID: 26932244 Plant-Microbe Communication Enhances Auxin Biosynthesis by a Root-Associated Bacterium, Bacillus Amyloliquefaciens SQR9 Molecular Plant-microbe Interactions : MPMI. Apr, 2016 | Pubmed ID: 26808445 Significant Alteration of Soil Bacterial Communities and Organic Carbon Decomposition by Different Long-term Fertilization Management Conditions of Extremely Low-productivity Arable Soil in South China Environmental Microbiology. Jun, 2016 | Pubmed ID: 26486414 Whole Transcriptomic Analysis of the Plant-beneficial Rhizobacterium Bacillus Amyloliquefaciens SQR9 During Enhanced Biofilm Formation Regulated by Maize Root Exudates BMC Genomics. Sep, 2015 | Pubmed ID: 26346121 Analysis and Cloning of the Synthetic Pathway of the Phytohormone Indole-3-acetic Acid in the Plant-beneficial Bacillus Amyloliquefaciens SQR9 Microbial Cell Factories. Sep, 2015 | Pubmed ID: 26337367 The Effect of Long-Term Continuous Cropping of Black Pepper on Soil Bacterial Communities As Determined by 454 Pyrosequencing PloS One. 2015 | Pubmed ID: 26317364 Characterization and Identification of the Xylanolytic Enzymes from Aspergillus Fumigatus Z5 BMC Microbiology. Jun, 2015 | Pubmed ID: 26100973 Genome-wide Transcriptomic Analysis of a Superior Biomass-degrading Strain of A. Fumigatus Revealed Active Lignocellulose-degrading Genes BMC Genomics. Jun, 2015 | Pubmed ID: 26076650 Parental Material and Cultivation Determine Soil Bacterial Community Structure and Fertility FEMS Microbiology Ecology. Jan, 2015 | Pubmed ID: 25764534 Responses of Beneficial Bacillus Amyloliquefaciens SQR9 to Different Soilborne Fungal Pathogens Through the Alteration of Antifungal Compounds Production Frontiers in Microbiology. 2014 | Pubmed ID: 25484880 Author Spotlight: Enhancing Rhizobacteria Colonization on Plant Roots for Improved Microbial Fertilizer Efficiency Xia Shu1,2, Huatai Li1, Jing Wang3, Shan Wang4, Yunpeng Liu1, Ruifu Zhang1,3 1State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, 2State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, 3Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, 4Jiangsu Engineering and Technology Center for Modern Horticulture, Jiangsu Vocational College of Agriculture and Forestry JoVE 66241 Environment
Author Spotlight: Enhancing Rhizobacteria Colonization on Plant Roots for Improved Microbial Fertilizer Efficiency Xia Shu1,2, Huatai Li1, Jing Wang3, Shan Wang4, Yunpeng Liu1, Ruifu Zhang1,3 1State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, 2State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, 3Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, National Engineering Research Center for Organic-based Fertilizers, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, 4Jiangsu Engineering and Technology Center for Modern Horticulture, Jiangsu Vocational College of Agriculture and Forestry JoVE 66241 Environment
