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Electrophoresis separates charged species based on their differential migration rates in an applied electric field. The greater the charge-to-size ratio, the faster a molecule migrates through the medium. This principle enables separation of high-molecular-weight species like proteins, nucleotides, and amino acids in complex mixtures with excellent resolution.

Slab electrophoresis uses a thin, flat porous gel matrix containing aqueous buffer solution. Samples are placed as spots or bands in sample wells, and an electric field is applied across the gel. The gel acts as a sieve, allowing molecules to move through pores at different rates. Post-separation, distinct components are visualized using UV light or staining techniques.

Electrophoretic mobility is the solute's direct response to the applied electric field, with cations moving toward the cathode and anions toward the anode. Electroosmotic flow occurs when the buffer solution itself moves through the capillary in response to the electric field, typically toward the cathode. Both forces influence the migration of sample components in capillary electrophoresis.

Capillary electrophoresis employs a narrow capillary tube filled with conducting buffer, providing high-resolution separation with rapid analysis time and minimal sample requirements. All separated species elute from the same end of the capillary, allowing detection using quantitative detectors. The resulting electropherogram resembles a chromatogram but features narrower peaks, enabling precise quantitative measurements.

Under normal conditions, capillary electrophoresis separates cations first, followed by neutral species, and finally anions. This order is based on their respective electrophoretic mobilities and electroosmotic flow velocities. The migration rate of each analyte depends on its charge and size, with smaller, more highly charged ions migrating faster than larger, less charged ones.

In slab electrophoresis, distinct components are visualized using UV light or staining techniques after separation. In capillary electrophoresis, migrating components are detected as they elute from the capillary at different times using quantitative detectors. The detector signals produce an electropherogram that records the separated species, providing both qualitative and quantitative information about the mixture.

Electrophoresis is widely employed for DNA sequencing and analysis of mixtures containing high-molecular-weight species. It effectively separates compounds like amino acids, nucleotides, carbohydrates, and proteins. The technique's strength lies in its ability to handle complex biochemical mixtures with excellent resolution, making it invaluable in biochemistry, molecular biology, and analytical chemistry applications.