Bacterial Isolation

Bacterial isolation is the process of separating individual bacterial species from a mixed sample to obtain a pure culture for study and identification. It typically uses selective or differential media, aseptic technique, and dilution or streak plating to distribute cells across a solid surface until separate colonies form from individual cells or cell groups. Researchers then examine colony morphology and perform biochemical, microscopic, or molecular tests to characterize the isolate. In biology, bacterial isolation supports environmental surveys, clinical diagnosis, food safety testing, and investigations of microbial physiology, interactions, and antibiotic susceptibility.

Bacterial Isolation - Related Videos

Research

JoVE EoE - Bacterial Pathogenesis and Host Interactions

Isolation of Mouse Bladder Epithelial Cells Containing Intracellular Bacterial Communities

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2026

Source: Yang, E., et al. Isolation of Single Intracellular Bacterial Communities Generated from a Murine Model of Urinary Tract Infection for Downstream Single-cell Analysis. J. Vis. Exp. (2019)This video demonstrates the manual isolation of single epithelial cells containing intracellular bacterial communities from infected mouse bladder using mouth micropipetting, enabling downstream single-cell analysis of viable host-associated E. coli populations in urinary tract infection...

Isolation of Bacterial Extracellular Vesicles Using Size-Exclusion Chromatography

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2025

Source: Watson, D. C., et al. Scalable Isolation and Purification of Extracellular Vesicles from Escherichia coli and Other Bacteria. J. Vis. Exp. (2021)This video demonstrates the use of size exclusion chromatography with porous resin beads to isolate bacterial extracellular vesicles (EVs) from a bacterial culture filtrate. Larger EVs elute early by bypassing the resin pores, while smaller proteins enter the pores and elute later.

Education

JoVE Science Education - Advanced Biology

Pure Cultures and Streak Plating: Isolation of Single Bacterial Colonies from a Mixed Sample

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2023

Source: Tilde Andersson1, Rolf Lood1 1 Department of Clinical Sciences Lund, Division of Infection Medicine, Biomedical Center, Lund University, 221 00 Lund, Sweden Seemingly impossible to determine, microbial biodiversity is truly astounding with an estimated one trillion coexisting species (1,2). Although particularly harsh climates, like the acidic environment of the human stomach (3) or the subglacial lakes of Antarctica (4), may be dominated by a specific species, bacteria are typically...

Culturing and Isolating Capsule-Forming Pathogenic Bacterial Strains

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2025

Source: Feltwell, T., et.al. Separating Bacteria by Capsule Amount Using a Discontinuous Density Gradient. J. Vis. Exp. (2019)This video demonstrates the preparation and characterization of bacterial strains with varying capsule production. Pathogenic strains carrying different mutations in capsule-related genes are cultured, grown in liquid media, and subjected to centrifugation to distinguish capsule phenotypes based on pellet density. Buffer treatment is used to wash and stabilize the cells...

Photodegradable Hydrogel-Based Isolation of Bacterial Colonies in Microwell Arrays

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2025

Source: Fattahi, N., et al. Photodegradable Hydrogel Interfaces for Bacteria Screening, Selection, and Isolation. J. Vis. Exp. (2021)This video demonstrates the use of photodegradable hydrogels to isolate bacterial colonies within silicon microwell arrays. Bacterial cells are first loaded into microwells, encapsulated in a crosslinked hydrogel, and cultured into distinct colonies. Upon exposure to ultraviolet light, targeted degradation of the hydrogel enables selective extraction of individual...

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