Retrotransposon

Retrotransposons are mobile genetic elements that replicate through an RNA intermediate, allowing their sequences to spread within a genome and influence genome structure and function. During transposition, the element is transcribed into RNA, reverse-transcribed into DNA by a retrotransposon-encoded reverse transcriptase, and inserted at a new genomic location, while the original copy usually remains in place. Major classes include long terminal repeat and non-long terminal repeat retrotransposons, such as LINEs and SINEs. Their activity can generate mutations, alter gene regulation, and promote genome evolution, making them important in studies of genetic diversity, development, disease, and host mechanisms that suppress genomic instability.

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JoVE Core - Molecular Biology
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LTR Retrotransposons

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2020

LTR retrotransposons are class I transposable elements with long terminal repeats flanking an internal coding region. These elements are less abundant in mammals compared to other class I transposable elements. About 8 percent of human genomic DNA comprises LTR retrotransposons. Some of the common examples of LTR retrotransposons are Ty elements in yeast and Copia elements in Drosophila. The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...

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JoVE Core - Molecular Biology
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Non-LTR Retrotransposons

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2020

As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...

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Overview of Transposition and Recombination

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2020

Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...

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DNA-only Transposons

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2020

DNA-only transposons are called autonomous transposons since they code for the enzyme transposase that is required for the transposition mechanism. Insertion of transposons can alter gene functions in multiple ways. They can mutate the gene, alter gene expression by introducing a novel promoter or insulator sequence, introduce new splice sites, and change the mRNA transcripts produced, or remodel chromatin structure. The donor site from where the transposon is excised is either degraded or...

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